SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent

PLoS Computational Biology

Volumn 12, Issue 9, 2016, Pages

  De Maio, Nicola ^a,b   Wu, Chieh Hsi ^b   Wilson, Daniel J ^a,b,c  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DISEASE CONTROL; OPEN SOURCE SOFTWARE; OPEN SYSTEMS; VIRUSES;

COMPUTATIONALLY EFFICIENT; EFFICIENT IMPLEMENTATION; EFFICIENT RECONSTRUCTION; INFECTIOUS DISEASE; NEW APPROACHES; OPEN SOURCE PACKAGE; PHYLOGENETICS; SIMPLIFYING ASSUMPTIONS; STATISTICAL FRAMEWORK; TRANSMISSION TREES;

POPULATION STATISTICS;

ACCURACY; ANIMAL DISEASE; ARTICLE; BACTERIAL GENETICS; BACTERIAL TRANSMISSION; BAYES THEOREM; CONCEPTUAL FRAMEWORK; ENGLAND; EPIDEMIC; EPIDEMIOLOGICAL DATA; FOOT AND MOUTH DISEASE VIRUS; HOST PATHOGEN INTERACTION; KLEBSIELLA PNEUMONIAE; MOLECULAR EVOLUTION; NEPAL; PHYLOGENY; SOFTWARE; STATISTICAL MODEL; VIRAL GENETICS; VIRUS TRANSMISSION;

EID: 84989361131     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1005130     Document Type: Article

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