Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks

PLoS Computational Biology

Volumn 13, Issue 5, 2017, Pages

  Klinkenberg, Don ^a   Backer, Jantien A ^a   Didelot, Xavier ^b   Colijn, Caroline ^b   Wallinga, Jacco ^a,c  

^a NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

^c LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN NETWORKS; FORESTRY; INFERENCE ENGINES; TREES (MATHEMATICS);

IDENTIFICATION OF RISKS; INFECTIOUS DISEASE OUTBREAKS; PHYLOGENETIC TREES; POSTERIOR DISTRIBUTIONS; PROCESS NEEDS; RISK FACTORS; SEQUENCE DATA; TRANSMISSION TREES; UNCERTAINTY; WHOLE GENOME SEQUENCING;

PATHOGENS;

ARTICLE; BAYESIAN LEARNING; DISEASE TRANSMISSION; DNA SEQUENCE; EPIDEMIC; EQUINE INFLUENZA (H7N7); FOOT AND MOUTH DISEASE; GENE MUTATION; HOST PATHOGEN INTERACTION; MARKOV CHAIN; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENETIC TREE; TUBERCULOSIS; ALGORITHM; BACTERIAL GENOME; BACTERIAL INFECTION; BACTERIUM; BIOLOGY; CLASSIFICATION; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSMISSION; VIRUS; VIRUS GENOME; VIRUS INFECTION;

ALGORITHMS; BACTERIA; BACTERIAL INFECTIONS; COMPUTATIONAL BIOLOGY; DISEASE TRANSMISSION, INFECTIOUS; GENOME, BACTERIAL; GENOME, VIRAL; HUMANS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; VIRUS DISEASES; VIRUSES;

EID: 85020118133     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1005495     Document Type: Article

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