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Volumn 46, Issue 3, 2018, Pages 1375-1385

Refined sgRNA efficacy prediction improves largeand small-scale CRISPR-Cas9 applications

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; RNA; SGRNA; UNCLASSIFIED DRUG; CAS9 ENDONUCLEASE STREPTOCOCCUS PYOGENES; GUIDE RNA;

EID: 85044625711     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx1268     Document Type: Article
Times cited : (187)

References (48)
  • 1
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A. and Charpentier, E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 4
  • 6
    • 84884155038 scopus 로고    scopus 로고
    • High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity
    • Pattanayak, V., Lin, S., Guilinger, J. P., Ma, E., Doudna, J. A. and Liu, D. R. (2013) High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat. Biotechnol., 31, 839-843.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 839-843
    • Pattanayak, V.1    Lin, S.2    Guilinger, J.P.3    Ma, E.4    Doudna, J.A.5    Liu, D.R.6
  • 10
    • 84963941043 scopus 로고    scopus 로고
    • High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects
    • Kleinstiver, B. P., Pattanayak, V., Prew, M. S., Tsai, S. Q., Nguyen, N. T., Zheng, Z. and Joung, J. K. (2016) High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature, 529, 490-495.
    • (2016) Nature , vol.529 , pp. 490-495
    • Kleinstiver, B.P.1    Pattanayak, V.2    Prew, M.S.3    Tsai, S.Q.4    Nguyen, N.T.5    Zheng, Z.6    Joung, J.K.7
  • 13
    • 84949791988 scopus 로고    scopus 로고
    • Broadening the targeting range of staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition
    • Kleinstiver, B. P., Prew, M. S., Tsai, S. Q., Nguyen, N. T., Topkar, V. V., Zheng, Z. and Joung, J. K. (2015) Broadening the targeting range of staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition. Nat. Biotechnol., 33, 1293-1298.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 1293-1298
    • Kleinstiver, B.P.1    Prew, M.S.2    Tsai, S.Q.3    Nguyen, N.T.4    Topkar, V.V.5    Zheng, Z.6    Joung, J.K.7
  • 16
    • 84896929630 scopus 로고    scopus 로고
    • Improving CRISPR-cas nuclease specificity using truncated guide RNAs
    • Fu, Y., Sander, J. D., Reyon, D., Cascio, V. M. and Joung, J. K. (2014) Improving CRISPR-cas nuclease specificity using truncated guide RNAs. Nat. Biotechnol., 32, 279-284.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 279-284
    • Fu, Y.1    Sander, J.D.2    Reyon, D.3    Cascio, V.M.4    Joung, J.K.5
  • 17
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • Sternberg, S. H., Redding, S., Jinek, M., Greene, E. C. and Doudna, J. A. (2014) DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature, 507, 62-67.
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 18
    • 84946215320 scopus 로고    scopus 로고
    • Conformational control of DNA target cleavage by CRISPR-Cas9
    • Sternberg, S. H., LaFrance, B., Kaplan, M. and Doudna, J. A. (2015) Conformational control of DNA target cleavage by CRISPR-Cas9. Nature, 527, 110-113.
    • (2015) Nature , vol.527 , pp. 110-113
    • Sternberg, S.H.1    LaFrance, B.2    Kaplan, M.3    Doudna, J.A.4
  • 21
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang, T., Wei, J. J., Sabatini, D. M. and Lander, E. S. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 23
    • 84919762182 scopus 로고    scopus 로고
    • Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in drosophila
    • Ren, X., Yang, Z., Xu, J., Sun, J., Mao, D., Hu, Y., Yang, S. J., Qiao, H. H., Wang, X., Hu, Q. et al. (2014) Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in drosophila. Cell. Rep., 9, 1151-1162.
    • (2014) Cell. Rep. , vol.9 , pp. 1151-1162
    • Ren, X.1    Yang, Z.2    Xu, J.3    Sun, J.4    Mao, D.5    Hu, Y.6    Yang, S.J.7    Qiao, H.H.8    Wang, X.9    Hu, Q.10
  • 24
    • 84940501210 scopus 로고    scopus 로고
    • Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach
    • Chari, R., Mali, P., Moosburner, M. and Church, G. M. (2015) Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach. Nat. Methods, 12, 823-826.
    • (2015) Nat. Methods , vol.12 , pp. 823-826
    • Chari, R.1    Mali, P.2    Moosburner, M.3    Church, G.M.4
  • 28
    • 84945926658 scopus 로고    scopus 로고
    • WU-CRISPR: Characteristics of functional guide RNAs for the CRISPR/Cas9 system
    • Wong, N., Liu, W. and Wang, X. (2015) WU-CRISPR: characteristics of functional guide RNAs for the CRISPR/Cas9 system. Genome Biol., 16, 218.
    • (2015) Genome Biol. , vol.16 , pp. 218
    • Wong, N.1    Liu, W.2    Wang, X.3
  • 32
    • 85029574047 scopus 로고    scopus 로고
    • CRISPR-Cas9-induced t (11;19)/MLL-ENL translocations initiate leukemia in human hematopoietic progenitor cells in vivo
    • Reimer, J., Knoess, S., Labuhn, M., Charpentier, E. M., Gohring, G., Schlegelberger, B., Klusmann, J. H. and Heckl, D. (2017) CRISPR-Cas9-induced t (11;19)/MLL-ENL translocations initiate leukemia in human hematopoietic progenitor cells in vivo. Haematologica, 102, 1558-1566.
    • (2017) Haematologica , vol.102 , pp. 1558-1566
    • Reimer, J.1    Knoess, S.2    Labuhn, M.3    Charpentier, E.M.4    Gohring, G.5    Schlegelberger, B.6    Klusmann, J.H.7    Heckl, D.8
  • 33
    • 84929494345 scopus 로고    scopus 로고
    • CCTop: An intuitive, flexible and reliable CRISPR/Cas9 target prediction tool
    • Stemmer, M., Thumberger, T., Del Sol Keyer, M., Wittbrodt, J. and Mateo, J. L. (2015) CCTop: An intuitive, flexible and reliable CRISPR/Cas9 target prediction tool. PLoS One, 10, e0124633.
    • (2015) PLoS One , vol.10 , pp. e0124633
    • Stemmer, M.1    Thumberger, T.2    Del Sol Keyer, M.3    Wittbrodt, J.4    Mateo, J.L.5
  • 34
    • 85020259224 scopus 로고    scopus 로고
    • An optimized lentiviral vector system for conditional RNAi and efficient cloning of microRNA embedded short hairpin RNA libraries
    • Adams, F. F., Heckl, D., Hoffmann, T., Talbot, S. R., Kloos, A., Thol, F., Heuser, M., Zuber, J., Schambach, A. and Schwarzer, A. (2017) An optimized lentiviral vector system for conditional RNAi and efficient cloning of microRNA embedded short hairpin RNA libraries. Biomaterials, 139, 102-115.
    • (2017) Biomaterials , vol.139 , pp. 102-115
    • Adams, F.F.1    Heckl, D.2    Hoffmann, T.3    Talbot, S.R.4    Kloos, A.5    Thol, F.6    Heuser, M.7    Zuber, J.8    Schambach, A.9    Schwarzer, A.10
  • 35
    • 33845663097 scopus 로고    scopus 로고
    • An accurate and interpretable model for siRNA efficacy prediction
    • Vert, J. P., Foveau, N., Lajaunie, C. and Vandenbrouck, Y. (2006) An accurate and interpretable model for siRNA efficacy prediction. BMC Bioinformatics, 7, 520.
    • (2006) BMC Bioinformatics , vol.7 , pp. 520
    • Vert, J.P.1    Foveau, N.2    Lajaunie, C.3    Vandenbrouck, Y.4
  • 37
    • 84898665052 scopus 로고    scopus 로고
    • Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
    • Koike-Yusa, H., Li, Y., Tan, E. P., Velasco-Herrera Mdel, C. and Yusa, K. (2014) Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library. Nat. Biotechnol., 32, 267-273.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 267-273
    • Koike-Yusa, H.1    Li, Y.2    Tan, E.P.3    Velasco-Herrera Mdel, C.4    Yusa, K.5
  • 39
    • 85038255269 scopus 로고    scopus 로고
    • CRISPR/Cas9-mediated gene knockout is insensitive to target copy number but is dependent on guide RNA potency and Cas9/sgRNA threshold expression level
    • Yuen, G., Khan, F. J., Gao, S., Stommel, J. M., Batchelor, E., Wu, X. and Luo, J. (2017) CRISPR/Cas9-mediated gene knockout is insensitive to target copy number but is dependent on guide RNA potency and Cas9/sgRNA threshold expression level. Nucleic Acids Res., 45, 12039-12053.
    • (2017) Nucleic Acids Res. , vol.45 , pp. 12039-12053
    • Yuen, G.1    Khan, F.J.2    Gao, S.3    Stommel, J.M.4    Batchelor, E.5    Wu, X.6    Luo, J.7
  • 41
    • 34547635063 scopus 로고    scopus 로고
    • HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
    • Wang, G. P., Ciuffi, A., Leipzig, J., Berry, C. C. and Bushman, F. D. (2007) HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res., 17, 1186-1194.
    • (2007) Genome Res. , vol.17 , pp. 1186-1194
    • Wang, G.P.1    Ciuffi, A.2    Leipzig, J.3    Berry, C.C.4    Bushman, F.D.5
  • 45
    • 84938836171 scopus 로고    scopus 로고
    • A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture
    • O'Geen, H., Henry, I. M., Bhakta, M. S., Meckler, J. F. and Segal, D. J. (2015) A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture. Nucleic Acids Res., 43, 3389-3404.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 3389-3404
    • O'Geen, H.1    Henry, I.M.2    Bhakta, M.S.3    Meckler, J.F.4    Segal, D.J.5
  • 46
    • 84903545084 scopus 로고    scopus 로고
    • Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease
    • Kuscu, C., Arslan, S., Singh, R., Thorpe, J. and Adli, M. (2014) Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease. Nat. Biotechnol., 32, 677-683.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 677-683
    • Kuscu, C.1    Arslan, S.2    Singh, R.3    Thorpe, J.4    Adli, M.5


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