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Volumn 3, Issue 4, 2018, Pages 514-522

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; SHORT CHAIN FATTY ACID; MUCIN; VOLATILE FATTY ACID;

EID: 85043340868     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/s41564-018-0123-9     Document Type: Article
Times cited : (193)

References (65)
  • 1
    • 84861980130 scopus 로고    scopus 로고
    • Interactions between the microbiota and the immune system
    • Hooper, L. V., Littman, D. R. & Macpherson, A. J. Interactions between the microbiota and the immune system. Science 336, 1268-1273 (2012).
    • (2012) Science , vol.336 , pp. 1268-1273
    • Hooper, L.V.1    Littman, D.R.2    Macpherson, A.J.3
  • 2
    • 84994792268 scopus 로고    scopus 로고
    • The central nervous system and the gut microbiome
    • Sharon, G., Sampson, T. R., Geschwind, D. H. & Mazmanian, S. K. The central nervous system and the gut microbiome. Cell 167, 915-932 (2016).
    • (2016) Cell , vol.167 , pp. 915-932
    • Sharon, G.1    Sampson, T.R.2    Geschwind, D.H.3    Mazmanian, S.K.4
  • 3
    • 84947812071 scopus 로고    scopus 로고
    • Personalized nutrition by prediction of glycemic responses
    • Zeevi, D. et al. Personalized nutrition by prediction of glycemic responses. Cell 163, 1079-1095 (2015).
    • (2015) Cell , vol.163 , pp. 1079-1095
    • Zeevi, D.1
  • 4
    • 84871454511 scopus 로고    scopus 로고
    • Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk
    • Holmes, E., Li, J. V., Marchesi, J. R. & Nicholson, J. K. Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab. 16, 559-564 (2012).
    • (2012) Cell Metab. , vol.16 , pp. 559-564
    • Holmes, E.1    Li, J.V.2    Marchesi, J.R.3    Nicholson, J.K.4
  • 5
    • 84977622019 scopus 로고    scopus 로고
    • Diet-microbiota interactions as moderators of human metabolism
    • Sonnenburg, J. L. & Bäckhed, F. Diet-microbiota interactions as moderators of human metabolism. Nature 535, 56-64 (2016).
    • (2016) Nature , vol.535 , pp. 56-64
    • Sonnenburg, J.L.1    Bäckhed, F.2
  • 6
    • 85038348922 scopus 로고    scopus 로고
    • Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides
    • Luis, A. S. et al. Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. Nat. Microbiol. 3, 210-219 (2017).
    • (2017) Nat. Microbiol. , vol.3 , pp. 210-219
    • Luis, A.S.1
  • 8
    • 84977620054 scopus 로고    scopus 로고
    • Interactions between the microbiota and pathogenic bacteria in the gut
    • Bäumler, A. J. & Sperandio, V. Interactions between the microbiota and pathogenic bacteria in the gut. Nature 535, 85-93 (2016).
    • (2016) Nature , vol.535 , pp. 85-93
    • Bäumler, A.J.1    Sperandio, V.2
  • 9
    • 84978081339 scopus 로고    scopus 로고
    • Human gut microbes impact host serum metabolome and insulin sensitivity
    • Pedersen, H. K. et al. Human gut microbes impact host serum metabolome and insulin sensitivity. Nature 535, 376-381 (2016).
    • (2016) Nature , vol.535 , pp. 376-381
    • Pedersen, H.K.1
  • 10
    • 84920613211 scopus 로고    scopus 로고
    • The gut commensal Bacteroides thetaiotaomicron exacerbates enteric infection through modification of the metabolic landscape
    • Curtis, M. M. et al. The gut commensal Bacteroides thetaiotaomicron exacerbates enteric infection through modification of the metabolic landscape. Cell Host Microbe 16, 759-769 (2014).
    • (2014) Cell Host Microbe , vol.16 , pp. 759-769
    • Curtis, M.M.1
  • 12
    • 69949123813 scopus 로고    scopus 로고
    • Identifying genetic determinants needed to establish a human gut symbiont in its habitat
    • Goodman, A. L. et al. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 6, 279-289 (2009).
    • (2009) Cell Host Microbe , vol.6 , pp. 279-289
    • Goodman, A.L.1
  • 13
    • 0016441787 scopus 로고
    • Minimal growth requirements for Clostridium perfringens and isolation of auxotrophic mutants
    • Sebald, M. & Costilow, R. N. Minimal growth requirements for Clostridium perfringens and isolation of auxotrophic mutants. Appl. Microbiol. 29, 1-6 (1975).
    • (1975) Appl. Microbiol. , vol.29 , pp. 1-6
    • Sebald, M.1    Costilow, R.N.2
  • 14
    • 0017061179 scopus 로고
    • Chemically defined media for growing anaerobic bacteria of the genus Veillonella
    • Lopes, J. N. & Cruz, F. S. Chemically defined media for growing anaerobic bacteria of the genus Veillonella. Antonie Van. Leeuwenhoek 42, 411-420 (1976).
    • (1976) Antonie Van. Leeuwenhoek , vol.42 , pp. 411-420
    • Lopes, J.N.1    Cruz, F.S.2
  • 15
    • 85011094697 scopus 로고    scopus 로고
    • Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
    • Magnúsdóttir, S. et al. Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. Nat. Biotechnol. 35, 81-89 (2017).
    • (2017) Nat. Biotechnol. , vol.35 , pp. 81-89
    • Magnúsdóttir, S.1
  • 16
    • 84896734943 scopus 로고    scopus 로고
    • A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
    • Larsbrink, J. et al. A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes. Nature 506, 498-502 (2014).
    • (2014) Nature , vol.506 , pp. 498-502
    • Larsbrink, J.1
  • 17
    • 84939233322 scopus 로고    scopus 로고
    • Metabolic interactions in microbial communities: Untangling the Gordian knot
    • Ponomarova, O. & Patil, K. R. Metabolic interactions in microbial communities: untangling the Gordian knot. Curr. Opin. Microbiol. 27, 37-44 (2015).
    • (2015) Curr. Opin. Microbiol. , vol.27 , pp. 37-44
    • Ponomarova, O.1    Patil, K.R.2
  • 18
    • 75149129569 scopus 로고    scopus 로고
    • A protocol for generating a high-quality genome-scale metabolic reconstruction
    • Thiele, I. & Palsson, B. Ø. A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc. 5, 93-121 (2010).
    • (2010) Nat. Protoc. , vol.5 , pp. 93-121
    • Thiele, I.1    Palsson, B.O.2
  • 19
    • 84938586730 scopus 로고    scopus 로고
    • Quantifying diet-induced metabolic changes of the human gut microbiome
    • Shoaie, S. et al. Quantifying diet-induced metabolic changes of the human gut microbiome. Cell Metab. 22, 320-331 (2015).
    • (2015) Cell Metab. , vol.22 , pp. 320-331
    • Shoaie, S.1
  • 20
    • 84856534859 scopus 로고    scopus 로고
    • Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
    • Castellarin, M. et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res. 22, 299-306 (2012).
    • (2012) Genome Res. , vol.22 , pp. 299-306
    • Castellarin, M.1
  • 21
    • 79959474060 scopus 로고    scopus 로고
    • Invasive potential of gut mucosa-derived fusobacterium nucleatum positively correlates with IBD status of the host
    • Strauss, J. et al. Invasive potential of gut mucosa-derived fusobacterium nucleatum positively correlates with IBD status of the host. Inflamm. Bowel Dis. 17, 1971-1978 (2011).
    • (2011) Inflamm. Bowel Dis. , vol.17 , pp. 1971-1978
    • Strauss, J.1
  • 22
    • 84879095218 scopus 로고    scopus 로고
    • Epidemiology of foodborne disease outbreaks caused by Clostridium perfringens, United States, 1998-2010
    • Grass, J. E., Gould, L. H. & Mahon, B. E. Epidemiology of foodborne disease outbreaks caused by Clostridium perfringens, United States, 1998-2010. Foodborne Pathog. Dis. 10, 131-136 (2013).
    • (2013) Foodborne Pathog. Dis. , vol.10 , pp. 131-136
    • Grass, J.E.1    Gould, L.H.2    Mahon, B.E.3
  • 23
    • 84921748500 scopus 로고    scopus 로고
    • Clinical and microbiological characteristics of Eggerthella lenta bacteremia
    • Gardiner, B. J. et al. Clinical and microbiological characteristics of Eggerthella lenta bacteremia. J. Clin. Microbiol. 53, 626-635 (2015).
    • (2015) J. Clin. Microbiol. , vol.53 , pp. 626-635
    • Gardiner, B.J.1
  • 24
    • 84964308526 scopus 로고    scopus 로고
    • Actinomyces and related organisms in human infections
    • Könönen, E. & Wade, W. G. Actinomyces and related organisms in human infections. Clin. Microbiol. Rev. 28, 419-442 (2015).
    • (2015) Clin. Microbiol. Rev. , vol.28 , pp. 419-442
    • Könönen, E.1    Wade, W.G.2
  • 25
    • 79955025122 scopus 로고    scopus 로고
    • Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
    • Goodman, A. L. et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc. Natl Acad. Sci. USA 108, 6252-6257 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 6252-6257
    • Goodman, A.L.1
  • 26
    • 59949100786 scopus 로고    scopus 로고
    • Development of chemically defined media supporting high-cell-density growth of lactococci, enterococci, and streptococci
    • Zhang, G., Mills, D. A. & Block, D. E. Development of chemically defined media supporting high-cell-density growth of lactococci, enterococci, and streptococci. Appl. Environ. Microbiol. 75, 1080-1087 (2009).
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1080-1087
    • Zhang, G.1    Mills, D.A.2    Block, D.E.3
  • 27
    • 34247622409 scopus 로고    scopus 로고
    • Characterization of the role of para-aminobenzoic acid biosynthesis in folate production by Lactococcus lactis
    • Wegkamp, A., Van Oorschot, W., De Vos, W. M. & Smid, E. J. Characterization of the role of para-aminobenzoic acid biosynthesis in folate production by Lactococcus lactis. Appl. Environ. Microbiol. 73, 2673-2681 (2007).
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2673-2681
    • Wegkamp, A.1    Van Oorschot, W.2    De Vos, W.M.3    Smid, E.J.4
  • 28
    • 0023693299 scopus 로고
    • Measurement of gastrointestinal pH profiles in normal ambulant human subjects
    • Evans, D. F. et al. Measurement of gastrointestinal pH profiles in normal ambulant human subjects. Gut 29, 1035-1041 (1988).
    • (1988) Gut , vol.29 , pp. 1035-1041
    • Evans, D.F.1
  • 29
    • 84907323900 scopus 로고    scopus 로고
    • Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
    • Rettedal, E. A., Gumpert, H. & Sommer, M. O. A. Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria. Nat. Commun. 5, 4714 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4714
    • Rettedal, E.A.1    Gumpert, H.2    Sommer, M.O.A.3
  • 30
    • 78149283854 scopus 로고    scopus 로고
    • Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
    • Png, C. W. et al. Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am. J. Gastroenterol. 105, 2420-2428 (2010).
    • (2010) Am. J. Gastroenterol. , vol.105 , pp. 2420-2428
    • Png, C.W.1
  • 31
    • 72249097352 scopus 로고    scopus 로고
    • Growth rate-dependent global effects on gene expression in bacteria
    • Klumpp, S., Zhang, Z. & Hwa, T. Growth rate-dependent global effects on gene expression in bacteria. Cell 139, 1366-1375 (2009).
    • (2009) Cell , vol.139 , pp. 1366-1375
    • Klumpp, S.1    Zhang, Z.2    Hwa, T.3
  • 32
    • 84969704060 scopus 로고    scopus 로고
    • Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation
    • Browne, H. P. et al. Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. Nature 533, 543-546 (2016).
    • (2016) Nature , vol.533 , pp. 543-546
    • Browne, H.P.1
  • 33
    • 84962195820 scopus 로고    scopus 로고
    • Intestinal short chain fatty acids and their link with diet and human health
    • Ríos-Covián, D. et al. Intestinal short chain fatty acids and their link with diet and human health. Front. Microbiol. 7, 185 (2016).
    • (2016) Front. Microbiol. , vol.7 , pp. 185
    • Ríos-Covián, D.1
  • 34
    • 84908608590 scopus 로고    scopus 로고
    • The gut microbiota, bacterial metabolites and colorectal cancer
    • Louis, P., Hold, G. L. & Flint, H. J. The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 12, 661-672 (2014).
    • (2014) Nat. Rev. Microbiol. , vol.12 , pp. 661-672
    • Louis, P.1    Hold, G.L.2    Flint, H.J.3
  • 35
    • 0001486645 scopus 로고
    • Toxicity of intestinal volatile fatty acids for yeast and Esch. Coli
    • Bergeim, O. Toxicity of intestinal volatile fatty acids for yeast and Esch. coli. J. Infect. Dis. 66, 222-234 (1940).
    • (1940) J. Infect. Dis. , vol.66 , pp. 222-234
    • Bergeim, O.1
  • 36
    • 0014096960 scopus 로고
    • Influence of pH on the inhibitory activity of formic and acetic acids for Shigella
    • Hentges, D. J. Influence of pH on the inhibitory activity of formic and acetic acids for Shigella. J. Bacteriol. 93, 2029-2030 (1967).
    • (1967) J. Bacteriol. , vol.93 , pp. 2029-2030
    • Hentges, D.J.1
  • 37
    • 0018396918 scopus 로고
    • Growth inhibition as a consequence of antagonism between related amino acids: Effect of valine in Escherichia coli K-12
    • De Felice, M., Levinthal, M., Iaccarino, M. & Guardiola, J. Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12. Microbiol. Rev. 43, 42-58 (1979).
    • (1979) Microbiol. Rev. , vol.43 , pp. 42-58
    • De Felice, M.1    Levinthal, M.2    Iaccarino, M.3    Guardiola, J.4
  • 38
    • 84923570274 scopus 로고    scopus 로고
    • Mucin glycan foraging in the human gut microbiome
    • Tailford, L. E., Crost, E. H., Kavanaugh, D. & Juge, N. Mucin glycan foraging in the human gut microbiome. Front. Genet. https://doi.org/10.3389/fgene.2015.00081 (2015).
    • (2015) Front. Genet.
    • Tailford, L.E.1    Crost, E.H.2    Kavanaugh, D.3    Juge, N.4
  • 39
    • 84885573828 scopus 로고    scopus 로고
    • Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
    • Ng, K. M. et al. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502, 96-99 (2013).
    • (2013) Nature , vol.502 , pp. 96-99
    • Ng, K.M.1
  • 40
    • 85030158230 scopus 로고    scopus 로고
    • Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow
    • Ponomarova, O. et al. Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow. Cell Syst. 5, 345-357 (2017).
    • (2017) Cell Syst. , vol.5 , pp. 345-357
    • Ponomarova, O.1
  • 41
    • 84876134492 scopus 로고    scopus 로고
    • TIGRFAMs and genome properties in 2013
    • Haft, D. H. et al. TIGRFAMs and genome properties in 2013. Nucleic Acids Res. 41, D387-D395 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D387-D395
    • Haft, D.H.1
  • 42
    • 84976469315 scopus 로고    scopus 로고
    • Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
    • Lau, J. T. et al. Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling. Genome Med. 8, 72 (2016).
    • (2016) Genome Med. , vol.8 , pp. 72
    • Lau, J.T.1
  • 43
    • 85043332830 scopus 로고    scopus 로고
    • Extensive impact of non-antibiotic drugs on human gut bacteria
    • Maier, L. et al. Extensive impact of non-antibiotic drugs on human gut bacteria. Nature https://doi.org/10.1038/nature25979 (2018).
    • (2018) Nature
    • Maier, L.1
  • 44
    • 0036866628 scopus 로고    scopus 로고
    • Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. Nov., comb. Nov
    • Duncan, S. H., Hold, G. L., Harmsen, H. J. M., Stewart, C. S. & Flint, H. J. Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 52, 2141-2146 (2002).
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2141-2146
    • Duncan, S.H.1    Hold, G.L.2    Harmsen, H.J.M.3    Stewart, C.S.4    Flint, H.J.5
  • 45
    • 0024408033 scopus 로고
    • Replacement of potassium ions by ammonium ions in different micro-organisms grown in potassium-limited chemostat culture
    • Buurman, E. T., Pennock, J., Tempest, D. W., Teixeira de Mattos, M. J. & Neijssel, O. M. Replacement of potassium ions by ammonium ions in different micro-organisms grown in potassium-limited chemostat culture. Arch. Microbiol. 152, 58-63 (1989).
    • (1989) Arch. Microbiol. , vol.152 , pp. 58-63
    • Buurman, E.T.1    Pennock, J.2    Tempest, D.W.3    Teixeira De-Mattos, M.J.4    Neijssel, O.M.5
  • 46
    • 0036061941 scopus 로고    scopus 로고
    • Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity
    • Roe, A. J., O'Byrne, C., McLaggan, D. & Booth, I. R. Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity. Microbiology 148, 2215-2222 (2002).
    • (2002) Microbiology , vol.148 , pp. 2215-2222
    • Roe, A.J.1    O'Byrne, C.2    McLaggan, D.3    Booth, I.R.4
  • 47
    • 79953025268 scopus 로고    scopus 로고
    • Spatial organization of intestinal microbiota in the mouse ascending colon
    • Nava, G. M., Friedrichsen, H. J. & Stappenbeck, T. S. Spatial organization of intestinal microbiota in the mouse ascending colon. ISME J. 5, 627-638 (2011).
    • (2011) ISME J , vol.5 , pp. 627-638
    • Nava, G.M.1    Friedrichsen, H.J.2    Stappenbeck, T.S.3
  • 48
    • 15544376418 scopus 로고    scopus 로고
    • Glycan foraging in vivo by an intestine-adapted bacterial symbiont
    • Sonnenburg, J. L. et al. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307, 1955-1959 (2005).
    • (2005) Science , vol.307 , pp. 1955-1959
    • Sonnenburg, J.L.1
  • 49
    • 84886440497 scopus 로고    scopus 로고
    • Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent
    • Crost, E. H. et al. Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent. PLoS ONE 8, e76341 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e76341
    • Crost, E.H.1
  • 50
    • 84883464181 scopus 로고    scopus 로고
    • Accurate and universal delineation of prokaryotic species
    • Mende, D. R., Sunagawa, S., Zeller, G. & Bork, P. Accurate and universal delineation of prokaryotic species. Nat. Methods 10, 881-884 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 881-884
    • Mende, D.R.1    Sunagawa, S.2    Zeller, G.3    Bork, P.4
  • 51
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower, C. et al. Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1
  • 52
    • 84905730761 scopus 로고    scopus 로고
    • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
    • Nielsen, H. B. et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat. Biotechnol. 32, 822-832 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 822-832
    • Nielsen, H.B.1
  • 53
    • 85044555332 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing: Commentary
    • Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing: commentary. Nature 11, 28 (2010).
    • (2010) Nature , vol.11 , pp. 28
    • Qin, J.1
  • 54
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60 (2012).
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1
  • 55
    • 85016101571 scopus 로고    scopus 로고
    • IMG/M: Integrated genome and metagenome comparative data analysis system
    • Chen, I. M. A. et al. IMG/M: Integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. 45, 507-516 (2017).
    • (2017) Nucleic Acids Res. , vol.45 , pp. 507-516
    • Chen, I.M.A.1
  • 56
    • 84891800783 scopus 로고    scopus 로고
    • IMG/M 4 version of the integrated metagenome comparative analysis system
    • Markowitz, V. M. et al. IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42, 568-573 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. 568-573
    • Markowitz, V.M.1
  • 57
    • 0034959553 scopus 로고    scopus 로고
    • Short-chain fatty acids and human colonic function: Roles of resistant starch and nonstarch polysaccharides
    • Topping, D. L. & Clifton, P. M. Short-chain fatty acids and human colonic function: roles of resistant starch and nonstarch polysaccharides. Physiol. Rev. 81, 1031-1064 (2001).
    • (2001) Physiol. Rev. , vol.81 , pp. 1031-1064
    • Topping, D.L.1    Clifton, P.M.2
  • 58
    • 0031840660 scopus 로고    scopus 로고
    • Review article: Short chain fatty acids in health and disease
    • Cook, S. I. & Sellin, J. H. Review article: short chain fatty acids in health and disease. Aliment. Pharmacol. Ther. 12, 499-507 (1998).
    • (1998) Aliment. Pharmacol. Ther. , vol.12 , pp. 499-507
    • Cook, S.I.1    Sellin, J.H.2
  • 59
    • 0017163169 scopus 로고
    • Branched-chain amino acid catabolism in bacteria
    • Massey, L. K., Sokatch, J. R. & Conrad, R. S. Branched-chain amino acid catabolism in bacteria. Bacteriol. Rev. 40, 42-54 (1976).
    • (1976) Bacteriol. Rev. , vol.40 , pp. 42-54
    • Massey, L.K.1    Sokatch, J.R.2    Conrad, R.S.3
  • 60
    • 0017883511 scopus 로고
    • Production of branched-chain volatile fatty acids by certain anaerobic bacteria
    • Allison, M. J. Production of branched-chain volatile fatty acids by certain anaerobic bacteria. Appl. Environ. Microbiol. 35, 872-877 (1978).
    • (1978) Appl. Environ. Microbiol. , vol.35 , pp. 872-877
    • Allison, M.J.1
  • 61
    • 84855173898 scopus 로고    scopus 로고
    • Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
    • Martens, E. C. et al. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol. 9, e1001221 (2011).
    • (2011) PLoS Biol. , vol.9 , pp. e1001221
    • Martens, E.C.1
  • 62
    • 84864442502 scopus 로고    scopus 로고
    • DbCAN: A web resource for automated carbohydrate-active enzyme annotation
    • Yin, Y. et al. DbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40, 445-451 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. 445-451
    • Yin, Y.1
  • 63
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMB net J. 17, 10-12 (2011).
    • (2011) EMB Net J , vol.17 , pp. 10-12
    • Martin, M.1
  • 64
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich, A. et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477 (2012).
    • (2012) J. Comput. Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1
  • 65
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: Rapid prokaryotic genome annotation
    • Seemann, T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1


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