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Volumn 45, Issue D1, 2017, Pages D507-D516

IMG/M: Integrated genome and metagenome comparative data analysis system

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL GENOME; ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; DATA ANALYSIS; DNA SEQUENCE; EUKARYOTE; GENOME; INTEGRATED MICROBIAL GENOMES WITH MICROBIOME SAMPLES; KNOWLEDGE BASE; METAGENOME; MICROBIOME; RNA SEQUENCE; VIRUS GENOME; BIOLOGY; GENETICS; METAGENOMICS; MICROFLORA; PROCEDURES; SOFTWARE; WEB BROWSER;

EID: 85016101571     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw929     Document Type: Article
Times cited : (348)

References (40)
  • 2
    • 84976871272 scopus 로고    scopus 로고
    • Reference sequence (RefSeq) database at NCBI: Current status, taxonomic expansion, and functional annotation
    • O'Leary, N.A., Wright, M.W., Brister, J.R. et al. (2016) Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Res., 44, D733-D745.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D733-D745
    • O'Leary, N.A.1    Wright, M.W.2    Brister, J.R.3
  • 5
    • 34447644810 scopus 로고    scopus 로고
    • CRISPR Recognition Tool (CRT): A tool for automatic detection of clustered regularly interspaced palindromic repeats
    • Bland, C., Ramsey, T.L., Sabree, F., Lowe, M., Brown, K., Kyrpides, N.C. and Hugenholtz, P. (2007) CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics, 8, 209.
    • (2007) BMC Bioinformatics , vol.8 , pp. 209
    • Bland, C.1    Ramsey, T.L.2    Sabree, F.3    Lowe, M.4    Brown, K.5    Kyrpides, N.C.6    Hugenholtz, P.7
  • 6
    • 84890037468 scopus 로고    scopus 로고
    • Infernal 1.1: 100-fold faster RNA homology searches
    • Nawrocki, E.P. and Eddy, S.R. (2013) Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics, 29, 2933-2935.
    • (2013) Bioinformatics , vol.29 , pp. 2933-2935
    • Nawrocki, E.P.1    Eddy, S.R.2
  • 8
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki, E.P., Kolbe, D.L. and Eddy, S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 10
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP, and related tools
    • Emanuelsson, O., Brunak, S., von Heijne, G. and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP, and related tools. Nat. Protoc., 2, 953-971.
    • (2007) Nat. Protoc. , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 11
    • 0034899781 scopus 로고    scopus 로고
    • Evaluation of methods for the prediction of membrane spanning regions
    • Moller, S., Croning, M.D.R. and Apweiler, R. (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics, 17, 646-653.
    • (2001) Bioinformatics , vol.17 , pp. 646-653
    • Moller, S.1    Croning, M.D.R.2    Apweiler, R.3
  • 12
    • 84941067064 scopus 로고    scopus 로고
    • Expanded microbial genome coverage and improved protein family annotation in the COG database
    • Galperin, M.Y., Makarova, K.S., Wolf, Y.I. and Koonin, E.V. (2015) Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res., 43, D261-D269.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D261-D269
    • Galperin, M.Y.1    Makarova, K.S.2    Wolf, Y.I.3    Koonin, E.V.4
  • 13
    • 84976865403 scopus 로고    scopus 로고
    • The Pfam protein families database: Towards a more sustainable future
    • Finn, R.D., Coggill, P., Eberhardt, R.Y. et al. (2016) The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res., 44, D279-D285.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D279-D285
    • Finn, R.D.1    Coggill, P.2    Eberhardt, R.Y.3
  • 16
    • 84899518211 scopus 로고    scopus 로고
    • InterProScan 5: Genome-scale protein function classification
    • Jones, P., Binns, D., Chang, H-Y et al. (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics., 30, 1236-1240.
    • (2014) Bioinformatics. , vol.30 , pp. 1236-1240
    • Jones, P.1    Binns, D.2    Chang, H.-Y.3
  • 19
    • 84976877782 scopus 로고    scopus 로고
    • TheMetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
    • Caspi, R., Billington, R., Ferrer, L. et al. (2016) TheMetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res., 44, D471-D480.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D471-D480
    • Caspi, R.1    Billington, R.2    Ferrer, L.3
  • 23
    • 71049180352 scopus 로고    scopus 로고
    • Gene context analysis in the integrated microbial genomes (IMG) data management system, accepted for publication
    • Mavromatis, K., Chu, K., Ivanova, N., Hooper, S.D., Markowitz, V.M. and Kyrpides, N.C. (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system, accepted for publication, PLoS ONE, 4, e7979.
    • (2009) PLoS ONE , vol.4 , pp. e7979
    • Mavromatis, K.1    Chu, K.2    Ivanova, N.3    Hooper, S.D.4    Markowitz, V.M.5    Kyrpides, N.C.6
  • 24
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright, A.J., Iliopoulos, I., Kyrpides, N.C. and Ouzounis, C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 32
    • 84976668743 scopus 로고
    • Algorithm 457: Finding all cliques of an undirected graph
    • Bron, C. and Kerbosch, J. (1973) Algorithm 457: finding all cliques of an undirected graph. Commun. ACM, 16, 575-577.
    • (1973) Commun. ACM , vol.16 , pp. 575-577
    • Bron, C.1    Kerbosch, J.2
  • 35
    • 84970005900 scopus 로고    scopus 로고
    • Microbiome Data Science: Understanding our microbial planet
    • Kyrpides, N.C., Eloe-Fadrosh, E.A. and Ivanova, N.N. (2016) Microbiome Data Science: understanding our microbial planet. Trends Microbiol., 24, 425-427.
    • (2016) Trends Microbiol. , vol.24 , pp. 425-427
    • Kyrpides, N.C.1    Eloe-Fadrosh, E.A.2    Ivanova, N.N.3
  • 38
    • 84978941037 scopus 로고    scopus 로고
    • Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
    • Eloe-Fadrosh, E.A., Ivanova, N.N., Woyke, T. and Kyrpides, N.C. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nat. Microbiol., 1, 15032.
    • (2016) Nat. Microbiol. , vol.1 , pp. 15032
    • Eloe-Fadrosh, E.A.1    Ivanova, N.N.2    Woyke, T.3    Kyrpides, N.C.4
  • 40
    • 85016095464 scopus 로고    scopus 로고
    • Maintaining a microbial genome & metagenome data analysis system in an academic setting
    • 14, July 2014
    • Chen, I.A., Markowitz, V., Szeto, E., Palaniappan, K. and Chu, K (2014) Maintaining a microbial genome & metagenome data analysis system in an academic setting, SSDBM, 14, July 2014.
    • (2014) SSDBM
    • Chen, I.A.1    Markowitz, V.2    Szeto, E.3    Palaniappan, K.4    Chu, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.