-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0004270170
-
-
New York: Wiley
-
Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. M., Seidman, J. G., Smith, J. A. & Struhl, K. (1994). Current Protocols in Molecular Biology, vol. 1. New York: Wiley.
-
(1994)
Current Protocols in Molecular Biology
, vol.1
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.M.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
3
-
-
0034111016
-
Phylogenetic relationships of butyrate-producing bacteria from the human gut
-
Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S. & Flint, H. J. (2000). Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654-1661.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1654-1661
-
-
Barcenilla, A.1
Pryde, S.E.2
Martin, J.C.3
Duncan, S.H.4
Stewart, C.S.5
Flint, H.J.6
-
4
-
-
0015464618
-
Commentary on the Hungate technique for cultivation of anaerobic bacteria
-
Bryant, M. P. (1972). Commentary on the Hungate technique for cultivation of anaerobic bacteria. Am J Clin Nutr 25, 1324-1328.
-
(1972)
Am. J. Clin. Nutr.
, vol.25
, pp. 1324-1328
-
-
Bryant, M.P.1
-
5
-
-
0016254138
-
Fusobacterium prausnitzii (Hauduroy et al.) Moore and Holdeman: Emended description and designation of neotype strain
-
Cato, E. P., Salmon, C. W. & Moore, W. E. C. (1974). Fusobacterium prausnitzii (Hauduroy et al.) Moore and Holdeman: emended description and designation of neotype strain. Int J Syst Bacteriol 24, 225-229.
-
(1974)
Int. J. Syst. Bacteriol.
, vol.24
, pp. 225-229
-
-
Cato, E.P.1
Salmon, C.W.2
Moore, W.E.C.3
-
6
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal for five new genera and eleven new species combinations
-
Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E. (1994). The phylogeny of the genus Clostridium: proposal for five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.E.9
-
7
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
8
-
-
0032527787
-
Inhibitory activity of gut bacteria against E. coli O157 mediated by dietary plant metabolites
-
Duncan, S. H., Flint, H. J. & Stewart, C. S. (1998). Inhibitory activity of gut bacteria against E. coli O157 mediated by dietary plant metabolites. FEMS Microbiol Lett 164, 283-288.
-
(1998)
FEMS Microbiol. Lett.
, vol.164
, pp. 283-288
-
-
Duncan, S.H.1
Flint, H.J.2
Stewart, C.S.3
-
9
-
-
0031692488
-
Variations of bacterial populations in human feces quantified by fluorescent in situ hybridisation with group-specific 16S rRNA-targeted probes
-
Franks, A. H., Harmsen, H. J. M., Raangs, G. C., Jansen, G. J. & Welling, G. W. (1998). Variations of bacterial populations in human feces quantified by fluorescent in situ hybridisation with group-specific 16S rRNA-targeted probes. Appl Environ Microbiol 64, 3336-3345.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3336-3345
-
-
Franks, A.H.1
Harmsen, H.J.M.2
Raangs, G.C.3
Jansen, G.J.4
Welling, G.W.5
-
10
-
-
0000122573
-
PHYLIP-phylogeny inference package (version 3.2)
-
Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
11
-
-
33748795943
-
-
Paris: Masson
-
Hauduroy, P., Ehringer, A., Guillot, G. & Magrou, J. (1937). Dictionnaire des Bactéries Pathog̀enes. Paris: Masson.
-
(1937)
Dictionnaire Des Bactéries Pathog̀enes
-
-
Hauduroy, P.1
Ehringer, A.2
Guillot, G.3
Magrou, J.4
-
12
-
-
0034777330
-
Characterisation of bacterial communities associated with toxic and non-toxic dinoflagellates: Alexandrium spp. and Scrippsiella trochoidea
-
7 other authors
-
Hold, G. L., Smith, E. A., Rappé, M. & 7 other authors (2001). Characterisation of bacterial communities associated with toxic and non-toxic dinoflagellates: Alexandrium spp. and Scrippsiella trochoidea. FEMS Microbiol Ecol 37, 161-173.
-
(2001)
FEMS Microbiol. Ecol.
, vol.37
, pp. 161-173
-
-
Hold, G.L.1
Smith, E.A.2
Rappé, M.3
-
13
-
-
0036185771
-
Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis
-
Hold, G. L., Pryde, S. E., Russell, V. J., Furrie, E. & Flint, H. J. (2002). Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol Ecol 39, 33-39.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 33-39
-
-
Hold, G.L.1
Pryde, S.E.2
Russell, V.J.3
Furrie, E.4
Flint, H.J.5
-
14
-
-
0017253248
-
Human fecal flora: Variation in the bacterial composition within individuals and a possible effect of emotional stress
-
Holdeman, L. V., Good, I. J. & Moore, W. E. C. (1976). Human fecal flora: variation in the bacterial composition within individuals and a possible effect of emotional stress. Appl Environ Microbiol 31, 359-375.
-
(1976)
Appl. Environ. Microbiol.
, vol.31
, pp. 359-375
-
-
Holdeman, L.V.1
Good, I.J.2
Moore, W.E.C.3
-
15
-
-
0003535096
-
-
4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
-
Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
-
(1977)
Anaerobe Laboratory Manual
-
-
Holdeman, L.V.1
Cato, E.P.2
Moore, W.E.C.3
-
17
-
-
0000686520
-
Genetic characterisation
-
Edited by P. Gerdhart & others. Washington, DC: American Society for Microbiology
-
Johnson, J. L. (1981). Genetic characterisation. In Manual of Methods for General Bacteriology, pp. 450-472. Edited by P. Gerdhart & others. Washington, DC: American Society for Microbiology.
-
(1981)
Manual of Methods for General Bacteriology
, pp. 450-472
-
-
Johnson, J.L.1
-
18
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Mol Evol 16, 111-120.
-
(1980)
Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
19
-
-
0034922767
-
Recurrent encephalopathy after small bowel resection. Implication of D-lactate
-
Lalive, P. H., Hadengue, A., Mensi, N. & Burkhard, P. R. (2001). Recurrent encephalopathy after small bowel resection. Implication of D-lactate. Rev Neurol 157, 679-681.
-
(2001)
Rev. Neurol.
, vol.157
, pp. 679-681
-
-
Lalive, P.H.1
Hadengue, A.2
Mensi, N.3
Burkhard, P.R.4
-
20
-
-
0014602306
-
Oxygen sensitivity of various anaerobic bacteria
-
Loesche, W. J. (1969). Oxygen sensitivity of various anaerobic bacteria. Appl Microbiol 18, 723-727.
-
(1969)
Appl. Microbiol.
, vol.18
, pp. 723-727
-
-
Loesche, W.J.1
-
21
-
-
0035175274
-
RDP-II (Ribosomal Database project)
-
7 other authors
-
Maidak, B. L., Cole, J. R., Lilburn, T. G. & 7 other authors (2001). RDP-II (Ribosomal Database project). Nucleic Acids Res 29, 173-174.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
-
23
-
-
0029084396
-
Intestinal floras of populations that have a high risk of colon cancer
-
Moore, W. E. C. & Moore, L. H. (1995). Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol 61, 3202-3207.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3202-3207
-
-
Moore, W.E.C.1
Moore, L.H.2
-
25
-
-
0024311277
-
Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography
-
Richardson, A. J., Calder, A. G., Stewart, C. S. & Smith, A. (1989). Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography. Lett Appl Microbiol 9, 5-8.
-
(1989)
Lett. Appl. Microbiol.
, vol.9
, pp. 5-8
-
-
Richardson, A.J.1
Calder, A.G.2
Stewart, C.S.3
Smith, A.4
-
26
-
-
0018855591
-
The colonic epithelium in ulcerative colitis: An energy deficient disease?
-
Roediger, W. E. W. (1980). The colonic epithelium in ulcerative colitis: an energy deficient disease? Lancet ii, 712-715.
-
(1980)
Lancet
, vol.2
, pp. 712-715
-
-
Roediger, W.E.W.1
-
27
-
-
0028962907
-
Isolation and characteristics of a wheatbran degrading Butyrivibrio from human faeces
-
Rumney, C., Duncan, S. H., Henderson, C. & Stewart, C. S. (1995). Isolation and characteristics of a wheatbran degrading Butyrivibrio from human faeces. Lett Appl Microbiol 20, 232-236.
-
(1995)
Lett. Appl. Microbiol.
, vol.20
, pp. 232-236
-
-
Rumney, C.1
Duncan, S.H.2
Henderson, C.3
Stewart, C.S.4
-
28
-
-
0004136246
-
-
2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
29
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0029165984
-
Role of short-chain fatty acids in the prevention of colorectal cancer
-
Scheppach, W., Bartram, H. P. & Richter, F. (1998). Role of short-chain fatty acids in the prevention of colorectal cancer. Eur J Cancer 31A, 1077-1080.
-
(1998)
Eur. J. Cancer.
, vol.31 A
, pp. 1077-1080
-
-
Scheppach, W.1
Bartram, H.P.2
Richter, F.3
-
31
-
-
0025095895
-
The properties of forms of Ruminococcus flavefaciens which differ in their ability to degrade cotton cellulose
-
Stewart, C. S., Duncan, S. H. & Flint, H. J. (1990). The properties of forms of Ruminococcus flavefaciens which differ in their ability to degrade cotton cellulose. FEMS Microbiol Lett 72, 47-50.
-
(1990)
FEMS Microbiol. Lett.
, vol.72
, pp. 47-50
-
-
Stewart, C.S.1
Duncan, S.H.2
Flint, H.J.3
-
32
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Gordon, J. J., Gibson, G. R., Collins, M. D. & Dore, J. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65, 4799-4807.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Gordon, J.J.4
Gibson, G.R.5
Collins, M.D.6
Dore, J.7
-
33
-
-
0035031148
-
Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora
-
Suau, A., Rochet, V., Sghir, A., Gramet, G., Brewaeys, S., Sutren, M., Rigottier-Gois, L. & Dore, J. (2001). Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora. Syst Appl Microbiol 24, 139-145.
-
(2001)
Syst. Appl. Microbiol.
, vol.24
, pp. 139-145
-
-
Suau, A.1
Rochet, V.2
Sghir, A.3
Gramet, G.4
Brewaeys, S.5
Sutren, M.6
Rigottier-Gois, L.7
Dore, J.8
-
34
-
-
0031877758
-
Short-chain fatty acids inhibit intestinal trefoil factor gene expression in colon cancer cells
-
Tran, C. P., Familari, M., Parker, L. M., Whitehead, R. H. & Giraud, A. S. (1998). Short-chain fatty acids inhibit intestinal trefoil factor gene expression in colon cancer cells. Am J Physiol-Gastrointest Liver Physiol 38, G85-G93.
-
(1998)
Am. J. Physiol-Gastrointest. Liver Physiol.
, vol.38
-
-
Tran, C.P.1
Familari, M.2
Parker, L.M.3
Whitehead, R.H.4
Giraud, A.S.5
-
35
-
-
0030052655
-
Phylogenetic analysis of Fusobacterium prausnitzii based on the 16S rRNA gene sequence and PCR confirmation
-
Wang, R. F., Cao, W. & Cerniglia, C. E. (1996a). Phylogenetic analysis of Fusobacterium prausnitzii based on the 16S rRNA gene sequence and PCR confirmation. Int J Syst Bacteriol 46, 341-343.
-
(1996)
Int. J. Syst. Bacteriol.
, vol.46
, pp. 341-343
-
-
Wang, R.F.1
Cao, W.2
Cerniglia, C.E.3
-
36
-
-
0026067797
-
16S ribosomal DNA for phylogenetic study
-
Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA for phylogenetic study. J Bacteriol 173, 697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
37
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson, K. H. & Blitchington, R. B. (1996). Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 62, 2273-2278.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
38
-
-
0031691877
-
Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
-
Wood, J., Scott, K. P., Avgustin, G., Newbold, C. J. & Flint, H. J. (1998). Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl Environ Microbiol 64, 3683-3689.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3683-3689
-
-
Wood, J.1
Scott, K.P.2
Avgustin, G.3
Newbold, C.J.4
Flint, H.J.5
|