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Volumn 42, Issue D1, 2014, Pages

IMG/M 4 version of the integrated metagenome comparative analysis system

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; DATA ANALYSIS; GENETIC DATABASE; IGM M 4 VERSION DATABASE; INFORMATION PROCESSING; METAGENOME; MICROBIAL COMMUNITY; PRIORITY JOURNAL; REVIEW; SEQUENCE HOMOLOGY; TRANSCRIPTOMICS; ARCHAEAL GENOME; BACTERIAL GENOME; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETICS; INTERNET; METAGENOMICS; PLASMID; SEQUENCE ANALYSIS; STANDARD; STANDARDS; SYSTEM ANALYSIS; VIRUS GENOME; ARTICLE; DATA BASE; DATA PROCESSING; GENE NUMBER; GENOME ANALYSIS; INFORMATION RETRIEVAL; RNA SEQUENCE;

EID: 84891800783     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt919     Document Type: Review
Times cited : (234)

References (22)
  • 3
    • 43449108562 scopus 로고    scopus 로고
    • Towards a richer description of our complete collection of genomes and metagenomes: The 'Minimum Information about a Genome Sequence' (MIGS) specification
    • Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P. et al. (2008) Towards a richer description of our complete collection of genomes and metagenomes: the 'Minimum Information about a Genome Sequence' (MIGS) specification. Nat. Biotechnol., 26, 541-547.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 541-547
    • Field, D.1    Garrity, G.2    Gray, T.3    Morrison, N.4    Selengut, J.5    Sterk, P.6
  • 4
    • 33745617710 scopus 로고    scopus 로고
    • A fast and symmetric DUST implementation to mask low-complexity DNA sequences
    • Morgulis, A., Gertz, E.M., Schaffer, A.A. and Agarwala, R. (2006) A fast and symmetric DUST implementation to mask low-complexity DNA sequences. J. Comput. Biol., 13, 1028-1040.
    • (2006) J. Comput. Biol. , vol.13 , pp. 1028-1040
    • Morgulis, A.1    Gertz, E.M.2    Schaffer, A.A.3    Agarwala, R.4
  • 5
    • 34447644810 scopus 로고    scopus 로고
    • CRISPR Recognition Tool (CRT): A tool for automatic detection of clustered regularly interspaced palindromic repeats
    • Bland, C., Ramsey, T.L., Sabree, F., Lowe, M., Brown, K., Kyrpides, N.C. and Hugenholtz, P. (2007) CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics, 8, 209.
    • (2007) BMC Bioinformatics , vol.8 , pp. 209
    • Bland, C.1    Ramsey, T.L.2    Sabree, F.3    Lowe, M.4    Brown, K.5    Kyrpides, N.C.6    Hugenholtz, P.7
  • 6
    • 33846975418 scopus 로고    scopus 로고
    • PILER-CR: Fast and accurate identification of CRISPR repeats
    • Edgar, R.C. (2007) PILER-CR: fast and accurate identification of CRISPR repeats. BMC Bioinformatics, 8, 18.
    • (2007) BMC Bioinformatics , vol.8 , pp. 18
    • Edgar, R.C.1
  • 7
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T.M. and Eddy, S.R. (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 8
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu, W., Lomsadze, A. and Borodovsky, M. (2010) Ab initio gene identification in metagenomic sequences. Nucleic Acids Res., 38, e132.
    • (2010) Nucleic Acids Res. , vol.38
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3
  • 9
    • 33750976398 scopus 로고    scopus 로고
    • MetaGene: Prokaryotic gene finding from environmental genome shotgun sequences
    • Noguchi, H., Park, J. and Takagi, T. (2006) MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res., 34, 5623-5630.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5623-5630
    • Noguchi, H.1    Park, J.2    Takagi, T.3
  • 11
    • 78651326786 scopus 로고    scopus 로고
    • FragGeneScan: Predicting genes in short and error-prone reads
    • Rho, M., Tang, H. and Ye, Y. (2010) FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res., 38, e191.
    • (2010) Nucleic Acids Res. , vol.38
    • Rho, M.1    Tang, H.2    Ye, Y.3
  • 14
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 15
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 20
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • The Human Microbiome Consortium.
    • The Human Microbiome Consortium. (2012) A framework for human microbiome research. Nature, 486, 215-221.
    • (2012) Nature , vol.486 , pp. 215-221
  • 22
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.I. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.