Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

Nature Methods

Volumn 11, Issue 2, 2014, Pages 167-170

  Distler, Ute ^a   Kuharev, Jörg ^a   Navarro, Pedro ^a   Levin, Yishai ^b   Schild, Hansjörg ^a   Tenzer, Stefan ^a  

^a UNIVERSITY MEDICAL CENTER MAINZ   (Germany)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATOGRAPHY, LIQUID; HELA CELLS; HUMANS; IONS; PEPTIDE FRAGMENTS; PROTEOME; PROTEOMICS; SOFTWARE; TANDEM MASS SPECTROMETRY;

PROTEOME;

ANALYTIC METHOD; ARTICLE; ENERGY TRANSFER; HELA CELL LINE; HUMAN; HUMAN CELL; ION MOBILITY SPECTROMETRY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEOMICS;

EID: 84895071750     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2767     Document Type: Article

References (18)

1. Aebersold, R. & Mann, M. Nature 422, 198-207 (.2003
2. Geromanos, S.J. et al. Proteomics 9, 1683-1695 (.2009
3. Michalski, A., Cox, J. & Mann, M. J. Proteome Res. 10, 1785-1793 (.2011
4. Kelstrup, C.D., Young, C., Lavallee, R., Nielsen, M.L. & Olsen, J.V. J. Proteome Res. 11, 3487-3497 (.2012
5. Venable, J.D., Dong, M., Wohlschlegel, J., Dillin, A. & Yates, J.R. Nat. Methods 1, 39-45 (.2004
6. Geiger, T., Cox, J. & Mann, M. Mol. Cell. Proteomics 9, 2252-2261 (.2010
7. Panchaud, A., Jung, S., Shaffer, S.A. Aitchison, J.D. & Goodlett, D.R. Anal. Chem. 83, 2250-2257 (.2011
8. Gillet, L.C. et al. Mol. Cell. Proteomics 11, O111.016717 (.2012
9. Silva, J.C. et al. Anal. Chem. 77, 2187-2200 (.2005
10. Lee, S. et al. Int. J. Mass Spectrom. 309, 154-160 (.2012
11. Valentine, S.J. et al. J. Proteome Res. 10, 2318-2329 (.2011
12. Baker, E.S. et al. J. Proteome Res. 9, 997-1006 (.2010
13. Geromanos, S.J., Hughes, C., Ciavarini, S., Vissers, J.P.C. & Langridge, J.I. Anal. Bioanal. Chem. 404, 1127-1139 (.2012
14. Maclean, B. et al. Anal. Chem. 82, 10116-10124 (.2010
15. Cox, J. & Mann, M. Nat. Biotechnol. 26, 1367-1372 (.2008
16. Serang, O. & Noble, W. Stat. Interface 5, 3-20 (.2012
17. Silva, J.C., Gorenstein, M.V., Li, G-Z., Vissers, J.P.C. & Geromanos, S.J. Mol. Cell. Proteomics 5, 144-156 (.2006
18. Vizcaíno, J.A. et al. Nucleic Acids Res. 41, D1063-D1069 (.2013