-
1
-
-
0033529565
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
-
Kornberg RD, Lorch Y (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98(3): 285-294.
-
(1999)
Cell
, vol.98
, Issue.3
, pp. 285-294
-
-
Kornberg, R.D.1
Lorch, Y.2
-
2
-
-
0030916336
-
What's up and down with histone deacetylation and transcription?
-
Pazin MJ, Kadonaga JT (1997) What's up and down with histone deacetylation and transcription? Cell 89(3): 325-328.
-
(1997)
Cell
, vol.89
, Issue.3
, pp. 325-328
-
-
Pazin, M.J.1
Kadonaga, J.T.2
-
3
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293(5532): 1074-1080.
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
4
-
-
84913584350
-
Diverse epigenetic mechanisms of human disease
-
Brookes E, Shi Y (2014) Diverse epigenetic mechanisms of human disease. Annu Rev Genet 48: 237-268.
-
(2014)
Annu Rev Genet
, vol.48
, pp. 237-268
-
-
Brookes, E.1
Shi, Y.2
-
5
-
-
84903771634
-
Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs
-
Alekseyenko AA, et al. (2014) Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs. Genes Dev 28(13): 1445-1460.
-
(2014)
Genes Dev
, vol.28
, Issue.13
, pp. 1445-1460
-
-
Alekseyenko, A.A.1
-
6
-
-
84894302147
-
Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL crosslinking and affinity purification
-
Alekseyenko AA, Gorchakov AA, Kharchenko PV, Kuroda MI (2014) Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL crosslinking and affinity purification. Proc Natl Acad Sci USA 111(7): 2488-2493.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.7
, pp. 2488-2493
-
-
Alekseyenko, A.A.1
Gorchakov, A.A.2
Kharchenko, P.V.3
Kuroda, M.I.4
-
7
-
-
84932185290
-
Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila
-
Kang H, et al. (2015) Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila. Genes Dev 29(11): 1136-1150.
-
(2015)
Genes Dev
, vol.29
, Issue.11
, pp. 1136-1150
-
-
Kang, H.1
-
8
-
-
84937213168
-
The BioPlex network: A systematic exploration of the human interactome
-
Huttlin EL, et al. (2015) The BioPlex network: A systematic exploration of the human interactome. Cell 162(2): 425-440.
-
(2015)
Cell
, vol.162
, Issue.2
, pp. 425-440
-
-
Huttlin, E.L.1
-
9
-
-
84949228956
-
BioTAP-XL: Cross-linking/tandem affinity purification to study DNA targets, RNA, and protein components of chromatin-associated complexes
-
Alekseyenko AA, et al. (2015) BioTAP-XL: Cross-linking/tandem affinity purification to study DNA targets, RNA, and protein components of chromatin-associated complexes. Curr Protoc Mol Biol 109: 21.30.1-21.30.32.
-
(2015)
Curr Protoc Mol Biol
, vol.109
, pp. 21301-213032
-
-
Alekseyenko, A.A.1
-
10
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
-
Zybailov B, et al. (2006) Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J Proteome Res 5(9): 2339-2347.
-
(2006)
J Proteome Res
, vol.5
, Issue.9
, pp. 2339-2347
-
-
Zybailov, B.1
-
11
-
-
3042541533
-
Functional integration of the histone acetyltransferase MOF into the dosage compensation complex
-
Morales V, et al. (2004) Functional integration of the histone acetyltransferase MOF into the dosage compensation complex. EMBO J 23(11): 2258-2268.
-
(2004)
EMBO J
, vol.23
, Issue.11
, pp. 2258-2268
-
-
Morales, V.1
-
12
-
-
0033988212
-
The drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation
-
Smith ER, et al. (2000) The drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation. Mol Cell Biol 20(1): 312-318.
-
(2000)
Mol Cell Biol
, vol.20
, Issue.1
, pp. 312-318
-
-
Smith, E.R.1
-
13
-
-
84940451246
-
Proximity ligation assays of protein and RNA interactions in the male-specific lethal complex on Drosophila melanogaster polytene chromosomes
-
Lindehell H, Kim M, Larsson J (2015) Proximity ligation assays of protein and RNA interactions in the male-specific lethal complex on Drosophila melanogaster polytene chromosomes. Chromosoma 124(3): 385-395.
-
(2015)
Chromosoma
, vol.124
, Issue.3
, pp. 385-395
-
-
Lindehell, H.1
Kim, M.2
Larsson, J.3
-
14
-
-
45549086908
-
Phosphoproteome analysis of Drosophila melanogaster embryos
-
Zhai B, Villén J, Beausoleil SA, Mintseris J, Gygi SP (2008) Phosphoproteome analysis of Drosophila melanogaster embryos. J Proteome Res 7(4): 1675-1682.
-
(2008)
J Proteome Res
, vol.7
, Issue.4
, pp. 1675-1682
-
-
Zhai, B.1
Villén, J.2
Beausoleil, S.A.3
Mintseris, J.4
Gygi, S.P.5
-
15
-
-
84910061461
-
Ultrasensitive proteome analysis using paramagnetic bead technology
-
Hughes CS, et al. (2014) Ultrasensitive proteome analysis using paramagnetic bead technology. Mol Syst Biol 10: 757.
-
(2014)
Mol Syst Biol
, vol.10
, pp. 757
-
-
Hughes, C.S.1
-
16
-
-
0025173758
-
Hydrophilic-interaction chromatography for the separation of peptides, nucleic acids and other polar compounds
-
Alpert AJ (1990) Hydrophilic-interaction chromatography for the separation of peptides, nucleic acids and other polar compounds. J Chromatogr A 499: 177-196.
-
(1990)
J Chromatogr A
, vol.499
, pp. 177-196
-
-
Alpert, A.J.1
-
17
-
-
84879818703
-
A quantitative atlas of histone modification signatures from human cancer cells
-
Leroy G, et al. (2013) A quantitative atlas of histone modification signatures from human cancer cells. Epigenetics Chromatin 6(1): 20.
-
(2013)
Epigenetics Chromatin
, vol.6
, Issue.1
, pp. 20
-
-
Leroy, G.1
-
18
-
-
48749102722
-
A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse
-
Schotta G, et al. (2008) A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse. Genes Dev 22(15): 2048-2061.
-
(2008)
Genes Dev
, vol.22
, Issue.15
, pp. 2048-2061
-
-
Schotta, G.1
-
19
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
Tan M, et al. (2011) Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146(6): 1016-1028.
-
(2011)
Cell
, vol.146
, Issue.6
, pp. 1016-1028
-
-
Tan, M.1
-
20
-
-
84866867319
-
H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
-
Ku M, et al. (2012) H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions. Genome Biol 13(10): R85.
-
(2012)
Genome Biol
, vol.13
, Issue.10
, pp. R85
-
-
Ku, M.1
-
21
-
-
79953143753
-
H3K36 methylation antagonizes PRC2-mediated H3K27 methylation
-
Yuan W, et al. (2011) H3K36 methylation antagonizes PRC2-mediated H3K27 methylation. J Biol Chem 286(10): 7983-7989.
-
(2011)
J Biol Chem
, vol.286
, Issue.10
, pp. 7983-7989
-
-
Yuan, W.1
-
22
-
-
84881179223
-
Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites
-
Zheng Y, Thomas PM, Kelleher NL (2013) Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites. Nat Commun 4: 2203.
-
(2013)
Nat Commun
, vol.4
, pp. 2203
-
-
Zheng, Y.1
Thomas, P.M.2
Kelleher, N.L.3
-
23
-
-
70449450290
-
One-pot shotgun quantitative mass spectrometry characterization of histones
-
Plazas-Mayorca MD, et al. (2009) One-pot shotgun quantitative mass spectrometry characterization of histones. J Proteome Res 8(11): 5367-5374.
-
(2009)
J Proteome Res
, vol.8
, Issue.11
, pp. 5367-5374
-
-
Plazas-Mayorca, M.D.1
-
24
-
-
84864923697
-
Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins
-
LeRoy G, et al. (2012) Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins. Genome Biol 13(8): R68.
-
(2012)
Genome Biol
, vol.13
, Issue.8
, pp. R68
-
-
LeRoy, G.1
-
25
-
-
84873569148
-
Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila
-
Wang CI, et al. (2013) Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila. Nat Struct Mol Biol 20(2): 202-209.
-
(2013)
Nat Struct Mol Biol
, vol.20
, Issue.2
, pp. 202-209
-
-
Wang, C.I.1
-
26
-
-
70349469565
-
Mechanisms of polycomb gene silencing: Knowns and unknowns
-
Simon JA, Kingston RE (2009) Mechanisms of polycomb gene silencing: Knowns and unknowns. Nat Rev Mol Cell Biol 10(10): 697-708.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.10
, pp. 697-708
-
-
Simon, J.A.1
Kingston, R.E.2
-
27
-
-
0041806599
-
The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis
-
Dey A, Chitsaz F, Abbasi A, Misteli T, Ozato K (2003) The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis. Proc Natl Acad Sci USA 100(15): 8758-8763.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.15
, pp. 8758-8763
-
-
Dey, A.1
Chitsaz, F.2
Abbasi, A.3
Misteli, T.4
Ozato, K.5
-
28
-
-
0018040673
-
Studies on histone organization in the nucleosome using formaldehyde as a reversible cross-linking agent
-
Jackson V (1978) Studies on histone organization in the nucleosome using formaldehyde as a reversible cross-linking agent. Cell 15(3): 945-954.
-
(1978)
Cell
, vol.15
, Issue.3
, pp. 945-954
-
-
Jackson, V.1
-
29
-
-
0023948705
-
Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene
-
Solomon MJ, Larsen PL, Varshavsky A (1988) Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene. Cell 53(6): 937-947.
-
(1988)
Cell
, vol.53
, Issue.6
, pp. 937-947
-
-
Solomon, M.J.1
Larsen, P.L.2
Varshavsky, A.3
-
30
-
-
80054776386
-
Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification
-
Wu CH, et al. (2011) Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification. PLoS One 6(10): E26217.
-
(2011)
PLoS One
, vol.6
, Issue.10
, pp. e26217
-
-
Wu, C.H.1
-
31
-
-
84890485404
-
Bi-functional cross-linking reagents efficiently capture protein- DNA complexes in Drosophila embryos
-
Aoki T, et al. (2014) Bi-functional cross-linking reagents efficiently capture protein- DNA complexes in Drosophila embryos. Fly (Austin) 8(1): 43-51.
-
(2014)
Fly (Austin)
, vol.8
, Issue.1
, pp. 43-51
-
-
Aoki, T.1
-
32
-
-
84944676907
-
A scalable genome-editing-based approach for mapping multiprotein complexes in human cells
-
Dalvai M, et al. (2015) A scalable genome-editing-based approach for mapping multiprotein complexes in human cells. Cell Reports 13(3): 621-633.
-
(2015)
Cell Reports
, vol.13
, Issue.3
, pp. 621-633
-
-
Dalvai, M.1
-
33
-
-
84867009687
-
Asymmetrically modified nucleosomes
-
Voigt P, et al. (2012) Asymmetrically modified nucleosomes. Cell 151(1): 181-193.
-
(2012)
Cell
, vol.151
, Issue.1
, pp. 181-193
-
-
Voigt, P.1
-
34
-
-
84863055703
-
An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS(n) analysis
-
Liu F, Wu C, Sweedler JV, Goshe MB (2012) An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS(n) analysis. Proteomics 12(3): 401-405.
-
(2012)
Proteomics
, vol.12
, Issue.3
, pp. 401-405
-
-
Liu, F.1
Wu, C.2
Sweedler, J.V.3
Goshe, M.B.4
-
35
-
-
84867345063
-
A cross-platform toolkit for mass spectrometry and proteomics
-
Chambers MC, et al. (2012) A cross-platform toolkit for mass spectrometry and proteomics. Nat Biotechnol 30(10): 918-920.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.10
, pp. 918-920
-
-
Chambers, M.C.1
-
36
-
-
79951750784
-
SearchGUI: An opensource graphical user interface for simultaneous OMSSA and X!Tandem searches
-
Vaudel M, Barsnes H, Berven FS, Sickmann A, Martens L (2011) SearchGUI: An opensource graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics 11(5): 996-999.
-
(2011)
Proteomics
, vol.11
, Issue.5
, pp. 996-999
-
-
Vaudel, M.1
Barsnes, H.2
Berven, F.S.3
Sickmann, A.4
Martens, L.5
-
37
-
-
84923897273
-
PeptideShaker enables reanalysis of MS-derived proteomics data sets
-
Vaudel M, et al. (2015) PeptideShaker enables reanalysis of MS-derived proteomics data sets. Nat Biotechnol 33(1): 22-24.
-
(2015)
Nat Biotechnol
, vol.33
, Issue.1
, pp. 22-24
-
-
Vaudel, M.1
|