메뉴 건너뛰기




Volumn 16, Issue 1, 2017, Pages

CRISPR interference-guided multiplex repression of endogenous competing pathway genes for redirecting metabolic flux in Escherichia coli

Author keywords

CRISPR interference; Endogenous gene; Escherichia coli; Multiple gene knockdown; n Butanol

Indexed keywords

ACETIC ACID; ALCOHOL; BUTANOL; LACTIC ACID; SUCCINIC ACID; ACETIC ACID DERIVATIVE; ESCHERICHIA COLI PROTEIN;

EID: 85032740297     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-017-0802-x     Document Type: Article
Times cited : (79)

References (51)
  • 2
    • 84865278051 scopus 로고    scopus 로고
    • Customized optimization of metabolic pathways by combinatorial transcriptional engineering
    • Du J, Yuan Y, Si T, Lian J, Zhao H. Customized optimization of metabolic pathways by combinatorial transcriptional engineering. Nucleic Acids Res. 2012;40:e142.
    • (2012) Nucleic Acids Res , vol.40
    • Du, J.1    Yuan, Y.2    Si, T.3    Lian, J.4    Zhao, H.5
  • 4
    • 84911920717 scopus 로고    scopus 로고
    • Metabolic pathway balancing and its role in the production of biofuels and chemicals
    • Jones JA, Toparlak OD, Koffas MA. Metabolic pathway balancing and its role in the production of biofuels and chemicals. Curr Opin Biotechnol. 2015;33:52-9.
    • (2015) Curr Opin Biotechnol , vol.33 , pp. 52-59
    • Jones, J.A.1    Toparlak, O.D.2    Koffas, M.A.3
  • 5
    • 84943604629 scopus 로고    scopus 로고
    • Systems strategies for developing industrial microbial strains
    • Lee SY, Kim HU. Systems strategies for developing industrial microbial strains. Nat Biotechnol. 2015;33:1061-72.
    • (2015) Nat Biotechnol , vol.33 , pp. 1061-1072
    • Lee, S.Y.1    Kim, H.U.2
  • 6
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA. 2000;97:6640-5.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 8
    • 84919701495 scopus 로고    scopus 로고
    • Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA
    • Gallagher RR, Li Z, Lewis AO, Isaacs FJ. Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA. Nat Protoc. 2014;9:2301-16.
    • (2014) Nat Protoc , vol.9 , pp. 2301-2316
    • Gallagher, R.R.1    Li, Z.2    Lewis, A.O.3    Isaacs, F.J.4
  • 9
    • 84937538704 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing
    • Li Y, Lin Z, Huang C, Zhang Y, Wang Z, Tang YJ, Chen T, Zhao X. Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing. Metab Eng. 2015;31:13-21.
    • (2015) Metab Eng , vol.31 , pp. 13-21
    • Li, Y.1    Lin, Z.2    Huang, C.3    Zhang, Y.4    Wang, Z.5    Tang, Y.J.6    Chen, T.7    Zhao, X.8
  • 14
    • 84926645319 scopus 로고    scopus 로고
    • Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: controllable P(3HB-co-4HB) biosynthesis
    • Lv L, Ren YL, Chen JC, Wu Q, Chen GQ. Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: controllable P(3HB-co-4HB) biosynthesis. Metab Eng. 2015;29:160-8.
    • (2015) Metab Eng , vol.29 , pp. 160-168
    • Lv, L.1    Ren, Y.L.2    Chen, J.C.3    Wu, Q.4    Chen, G.Q.5
  • 15
    • 84928159353 scopus 로고    scopus 로고
    • Regulating malonyl-CoA metabolism via synthetic antisense RNAs for enhanced biosynthesis of natural products
    • Yang Y, Lin Y, Li L, Linhardt RJ, Yan Y. Regulating malonyl-CoA metabolism via synthetic antisense RNAs for enhanced biosynthesis of natural products. Metab Eng. 2015;29:217-26.
    • (2015) Metab Eng , vol.29 , pp. 217-226
    • Yang, Y.1    Lin, Y.2    Li, L.3    Linhardt, R.J.4    Yan, Y.5
  • 16
    • 84986198285 scopus 로고    scopus 로고
    • CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production
    • Kim SK, Han GH, Seong W, Kim H, Kim S-W, Lee D-H, Lee S-G. CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production. Metab Eng. 2016;38:228-40.
    • (2016) Metab Eng , vol.38 , pp. 228-240
    • Kim, S.K.1    Han, G.H.2    Seong, W.3    Kim, H.4    Kim, S.-W.5    Lee, D.-H.6    Lee, S.-G.7
  • 18
    • 84910120084 scopus 로고    scopus 로고
    • Fine-tuning of the fatty acid pathway by synthetic antisense rna for enhanced (2S)-naringenin production from l-tyrosine in Escherichia coli
    • Wu J, Yu O, Du G, Zhou J, Chen J. Fine-tuning of the fatty acid pathway by synthetic antisense rna for enhanced (2S)-naringenin production from l-tyrosine in Escherichia coli. Appl Environ Microbiol. 2014;80:7283-92.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 7283-7292
    • Wu, J.1    Yu, O.2    Du, G.3    Zhou, J.4    Chen, J.5
  • 19
    • 84869102255 scopus 로고    scopus 로고
    • A dynamic metabolite valve for the control of central carbon metabolism
    • Solomon KV, Sanders TM, Prather KL. A dynamic metabolite valve for the control of central carbon metabolism. Metab Eng. 2012;14:661-71.
    • (2012) Metab Eng , vol.14 , pp. 661-671
    • Solomon, K.V.1    Sanders, T.M.2    Prather, K.L.3
  • 20
    • 84867191934 scopus 로고    scopus 로고
    • Engineering artificial small RNAs for conditional gene silencing in Escherichia coli
    • Sharma V, Yamamura A, Yokobayashi Y. Engineering artificial small RNAs for conditional gene silencing in Escherichia coli. ACS Synth Biol. 2012;1:6-13.
    • (2012) ACS Synth Biol , vol.1 , pp. 6-13
    • Sharma, V.1    Yamamura, A.2    Yokobayashi, Y.3
  • 21
    • 84882986957 scopus 로고    scopus 로고
    • Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    • Bikard D, Jiang W, Samai P, Hochschild A, Zhang F, Marraffini LA. Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res. 2013;41:7429-37.
    • (2013) Nucleic Acids Res , vol.41 , pp. 7429-7437
    • Bikard, D.1    Jiang, W.2    Samai, P.3    Hochschild, A.4    Zhang, F.5    Marraffini, L.A.6
  • 22
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP, Lim WA. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell. 2013;152:1173-83.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 23
    • 84940840437 scopus 로고    scopus 로고
    • Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli
    • Wu J, Du G, Chen J, Zhou J. Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli. Sci Rep. 2015;5:13477.
    • (2015) Sci Rep , vol.5 , pp. 13477
    • Wu, J.1    Du, G.2    Chen, J.3    Zhou, J.4
  • 26
    • 85027956141 scopus 로고    scopus 로고
    • CRISPRi engineering E. coli for morphology diversification
    • Elhadi D, Lv L, Jiang X-R, Wu H, Chen G-Q. CRISPRi engineering E. coli for morphology diversification. Metab Eng. 2016;38:358-69.
    • (2016) Metab Eng , vol.38 , pp. 358-369
    • Elhadi, D.1    Lv, L.2    Jiang, X.-R.3    Wu, H.4    Chen, G.-Q.5
  • 27
  • 28
    • 85008698336 scopus 로고    scopus 로고
    • Improving the production of acetyl-CoA-derived chemicals in Escherichia coli BL21(DE3) through iclR and arcA deletion
    • Liu M, Ding Y, Chen H, Zhao Z, Liu H, Xian M, Zhao G. Improving the production of acetyl-CoA-derived chemicals in Escherichia coli BL21(DE3) through iclR and arcA deletion. BMC Microbiol. 2017;17:10.
    • (2017) BMC Microbiol , vol.17 , pp. 10
    • Liu, M.1    Ding, Y.2    Chen, H.3    Zhao, Z.4    Liu, H.5    Xian, M.6    Zhao, G.7
  • 29
    • 84961198010 scopus 로고    scopus 로고
    • Systematic engineering of the central metabolism in Escherichia coli for effective production of n-butanol
    • Saini M, Li S-Y, Wang ZW, Chiang C-J, Chao Y-P. Systematic engineering of the central metabolism in Escherichia coli for effective production of n-butanol. Biotechnol Biofuel. 2016;9:69.
    • (2016) Biotechnol Biofuel , vol.9 , pp. 69
    • Saini, M.1    Li, S.-Y.2    Wang, Z.W.3    Chiang, C.-J.4    Chao, Y.-P.5
  • 30
    • 84896489949 scopus 로고    scopus 로고
    • Improving poly-3-hydroxybutyrate production in Escherichia coli by combining the increase in the NADPH pool and acetyl-CoA availability
    • Centeno-Leija S, Huerta-Beristain G, Giles-Gómez M, Bolivar F, Gosset G, Martinez A. Improving poly-3-hydroxybutyrate production in Escherichia coli by combining the increase in the NADPH pool and acetyl-CoA availability. Antonie Leeuwenhoek. 2014;105:687-96.
    • (2014) Antonie Leeuwenhoek , vol.105 , pp. 687-696
    • Centeno-Leija, S.1    Huerta-Beristain, G.2    Giles-Gómez, M.3    Bolivar, F.4    Gosset, G.5    Martinez, A.6
  • 31
    • 85006922958 scopus 로고    scopus 로고
    • Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts
    • Kim J-H, Wang C, Jang H-J, Cha M-S, Park J-E, Jo S-Y, Choi E-S, Kim S-W. Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts. Microb Cell Fact. 2016;15:214.
    • (2016) Microb Cell Fact , vol.15 , pp. 214
    • Kim, J.-H.1    Wang, C.2    Jang, H.-J.3    Cha, M.-S.4    Park, J.-E.5    Jo, S.-Y.6    Choi, E.-S.7    Kim, S.-W.8
  • 32
    • 34247182988 scopus 로고    scopus 로고
    • Engineering Escherichia coli for production of functionalized terpenoids using plant P450s
    • Chang MCY, Eachus RA, Trieu W, Ro D-K, Keasling JD. Engineering Escherichia coli for production of functionalized terpenoids using plant P450s. Nat Chem Biol. 2007;3:274-7.
    • (2007) Nat Chem Biol , vol.3 , pp. 274-277
    • Chang, M.C.Y.1    Eachus, R.A.2    Trieu, W.3    Ro, D.-K.4    Keasling, J.D.5
  • 35
    • 85008466182 scopus 로고    scopus 로고
    • Leucine zipper-mediated targeting of multi-enzyme cascade reactions to inclusion bodies in Escherichia coli for enhanced production of 1-butanol
    • Han GH, Seong W, Fu Y, Yoon PK, Kim SK, Yeom S-J, Lee D-H, Lee S-G. Leucine zipper-mediated targeting of multi-enzyme cascade reactions to inclusion bodies in Escherichia coli for enhanced production of 1-butanol. Metab Eng. 2017;40:41-9.
    • (2017) Metab Eng , vol.40 , pp. 41-49
    • Han, G.H.1    Seong, W.2    Fu, Y.3    Yoon, P.K.4    Kim, S.K.5    Yeom, S.-J.6    Lee, D.-H.7    Lee, S.-G.8
  • 36
    • 84941112071 scopus 로고    scopus 로고
    • SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities
    • Martínez-García E, Aparicio T, Goñi-Moreno A, Fraile S, de Lorenzo V. SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities. Nucleic Acids Res. 2015;43:D1183-9.
    • (2015) Nucleic Acids Res , vol.43 , pp. D1183-D1189
    • Martínez-García, E.1    Aparicio, T.2    Goñi-Moreno, A.3    Fraile, S.4    Lorenzo, V.5
  • 37
    • 39849098903 scopus 로고    scopus 로고
    • Optimization of an E. colil-rhamnose-inducible expression vector: test of various genetic module combinations
    • Wegerer A, Sun T, Altenbuchner J. Optimization of an E. coli l-rhamnose-inducible expression vector: test of various genetic module combinations. BMC Biotechnol. 2008;8:2.
    • (2008) BMC Biotechnol , vol.8 , pp. 2
    • Wegerer, A.1    Sun, T.2    Altenbuchner, J.3
  • 38
    • 33646002978 scopus 로고    scopus 로고
    • Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system
    • Giacalone MJ, Gentile AM, Lovitt BT, Berkley NL, Gunderson CW, Surber MW. Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system. Biotechniques. 2006;40:355-64.
    • (2006) Biotechniques , vol.40 , pp. 355-364
    • Giacalone, M.J.1    Gentile, A.M.2    Lovitt, B.T.3    Berkley, N.L.4    Gunderson, C.W.5    Surber, M.W.6
  • 39
    • 23344450789 scopus 로고    scopus 로고
    • Characterization of the acetate-producing pathways in Escherichia coli
    • Dittrich CR, Bennett GN, San KY. Characterization of the acetate-producing pathways in Escherichia coli. Biotechnol Prog. 2005;21:1062-7.
    • (2005) Biotechnol Prog , vol.21 , pp. 1062-1067
    • Dittrich, C.R.1    Bennett, G.N.2    San, K.Y.3
  • 41
    • 15244361841 scopus 로고    scopus 로고
    • D-lactate production under microaerobic condition
    • D-lactate production under microaerobic condition. Metab Eng. 2005;7:104-15.
    • (2005) Metab Eng , vol.7 , pp. 104-115
    • Zhu, J.1    Shimizu, K.2
  • 42
  • 43
    • 84897025067 scopus 로고    scopus 로고
    • Expanding ester biosynthesis in Escherichia coli
    • Rodriguez GM, Tashiro Y, Atsumi S. Expanding ester biosynthesis in Escherichia coli. Nat Chem Biol. 2014;10:259-65.
    • (2014) Nat Chem Biol , vol.10 , pp. 259-265
    • Rodriguez, G.M.1    Tashiro, Y.2    Atsumi, S.3
  • 44
    • 84959876975 scopus 로고    scopus 로고
    • Frontiers in microbial 1-butanol and isobutanol production
    • Chen C-T, Liao JC. Frontiers in microbial 1-butanol and isobutanol production. FEMS Microbiol Lett. 2016;363:fnw020.
    • (2016) FEMS Microbiol Lett , vol.363
    • Chen, C.-T.1    Liao, J.C.2
  • 46
    • 39649103644 scopus 로고    scopus 로고
    • Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals
    • Murarka A, Dharmadi Y, Yazdani SS, Gonzalez R. Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals. Appl Environ Microbiol. 2008;74:1124-35.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1124-1135
    • Murarka, A.1    Dharmadi, Y.2    Yazdani, S.S.3    Gonzalez, R.4
  • 47
    • 84873596341 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
    • Na D, Yoo SM, Chung H, Park H, Park JH, Lee SY. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat Biotechnol. 2013;31:170-4.
    • (2013) Nat Biotechnol , vol.31 , pp. 170-174
    • Na, D.1    Yoo, S.M.2    Chung, H.3    Park, H.4    Park, J.H.5    Lee, S.Y.6
  • 49
    • 84883419083 scopus 로고    scopus 로고
    • Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli
    • Yoo SM, Na D, Lee SY. Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli. Nat Protoc. 2013;8:1694-707.
    • (2013) Nat Protoc , vol.8 , pp. 1694-1707
    • Yoo, S.M.1    Na, D.2    Lee, S.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.