-
1
-
-
84940790627
-
Reprogramming and transdifferentiation for cardiovascular development and regenerative medicine: Where do we stand
-
Ebert AD, S Diecke, IY Chen and JC Wu. (2015). Reprogramming and transdifferentiation for cardiovascular development and regenerative medicine: where do we stand? EMBO Mol Med 7:1090-1103.
-
(2015)
EMBO Mol Med
, vol.7
, pp. 1090-1103
-
-
Ebert, A.D.1
Diecke, S.2
Chen, I.Y.3
Wu, J.C.4
-
2
-
-
84929661801
-
Advances and applications of single-cell sequencing technologies
-
Wang Y and NE Navin. (2015). Advances and applications of single-cell sequencing technologies. Mol Cell 58:598-609.
-
(2015)
Mol Cell
, vol.58
, pp. 598-609
-
-
Wang, Y.1
Navin, N.E.2
-
3
-
-
84922629832
-
Quantitative single-cell approaches to stem cell research
-
Etzrodt M, M Endele and T Schroeder. (2014). Quantitative single-cell approaches to stem cell research. Cell Stem Cell 15:546-558.
-
(2014)
Cell Stem Cell
, vol.15
, pp. 546-558
-
-
Etzrodt, M.1
Endele, M.2
Schroeder, T.3
-
4
-
-
84949921879
-
Epigenomic reprogramming of adult cardiomyocyte-derived cardiac progenitor cells
-
Zhang Y, JF Zhong, H Qiu, WR MacLellan, E Marbán and C Wang. (2015). Epigenomic reprogramming of adult cardiomyocyte-derived cardiac progenitor cells. Sci Rep 5:17686.
-
(2015)
Sci Rep
, vol.5
, pp. 17686
-
-
Zhang, Y.1
Zhong, J.F.2
Qiu, H.3
MacLellan, W.R.4
Marbán, E.5
Wang, C.6
-
5
-
-
84937947663
-
Technologies for single-cell isolation
-
Gross A, J Schoendube, S Zimmermann, M Steeb, R Zengerle and P Koltay. (2015). Technologies for single-cell isolation. Int J Mol Sci 16:16897-16919.
-
(2015)
J Mol Sci
, vol.16
, pp. 16897-16919
-
-
Gross, A.1
Schoendube, J.2
Zimmermann, S.3
Steeb, M.4
Zengerle, R.5
Koltay, P.6
-
6
-
-
84929687805
-
The technology and biology of single-cell RNA sequencing
-
Kolodziejczyk AA, JK Kim, V Svensson, JC Marioni and SA Teichmann. (2015). The technology and biology of single-cell RNA sequencing. Mol Cell 58:610-620.
-
(2015)
Mol Cell
, vol.58
, pp. 610-620
-
-
Kolodziejczyk, A.A.1
Kim, J.K.2
Svensson, V.3
Marioni, J.C.4
Teichmann, S.A.5
-
7
-
-
84923251159
-
Single cell transcriptomics: Methods and applications
-
Kanter I and T Kalisky. (2015). Single cell transcriptomics: methods and applications. Front Oncol 5:53.
-
(2015)
Front Oncol
, vol.5
, pp. 53
-
-
Kanter, I.1
Kalisky, T.2
-
8
-
-
84891346362
-
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
-
Ohnishi Y, W Huber, A Tsumura, M Kang, P Xenopoulos, K Kurimoto, AK Oles, MJ Arauzo-Bravo, M Saitou, AK Hadjantonakis and T Hiiragi. (2014). Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages. Nat Cell Biol 16:27-37.
-
(2014)
Nat Cell Biol
, vol.16
, pp. 27-37
-
-
Ohnishi, Y.1
Huber, W.2
Tsumura, A.3
Kang, M.4
Xenopoulos, P.5
Kurimoto, K.6
Oles, A.K.7
Arauzo-Bravo, M.J.8
Saitou, M.9
Hadjantonakis, A.K.10
Hiiragi, T.11
-
9
-
-
67349146589
-
mRNA-Seq whole-transcriptome analysis of a single cell
-
Tang F, C Barbacioru, Y Wang, E Nordman, C Lee, N Xu, X Wang, J Bodeau, BB Tuch and A Siddiqui. (2009). mRNA-Seq whole-transcriptome analysis of a single cell. Nat Methods 6:377-382.
-
(2009)
Nat Methods
, vol.6
, pp. 377-382
-
-
Tang, F.1
Barbacioru, C.2
Wang, Y.3
Nordman, E.4
Lee, C.5
Xu, N.6
Wang, X.7
Bodeau, J.8
Tuch, B.B.9
Siddiqui, A.10
-
10
-
-
84866953427
-
CEL-Seq: Single-cell RNA-Seq by multiplexed linear amplification
-
Hashimshony T, F Wagner, N Sher and I Yanai. (2012). CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep 2:666-673.
-
(2012)
Cell Rep
, vol.2
, pp. 666-673
-
-
Hashimshony, T.1
Wagner, F.2
Sher, N.3
Yanai, I.4
-
11
-
-
84964452502
-
CEL-Seq2: Sensitive highly-multiplexed single-cell RNA-Seq
-
Hashimshony T, N Senderovich, G Avital, A Klochendler, Y de Leeuw, L Anavy, D Gennert, S Li, KJ Livak, et al. (2016). CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. Genome Biol 17:77.
-
(2016)
Genome Biol
, vol.17
, pp. 77
-
-
Hashimshony, T.1
Senderovich, N.2
Avital, G.3
Klochendler, A.4
De Leeuw, Y.5
Anavy, L.6
Gennert, D.7
Li, S.8
Livak, K.J.9
-
12
-
-
84864880991
-
Fulllength mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
-
Ramskold D, S Luo, YC Wang, R Li, Q Deng, OR Faridani, GA Daniels, I Khrebtukova, JF Loring, et al. (2012). Fulllength mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. Nat Biotechnol 30:777-782.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 777-782
-
-
Ramskold, D.1
Luo, S.2
Wang, Y.C.3
Li, R.4
Deng, Q.5
Faridani, O.R.6
Daniels, G.A.7
Khrebtukova, I.8
Loring, J.F.9
-
13
-
-
84887101406
-
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
-
Picelli S, AK Bjorklund, OR Faridani, S Sagasser, G Winberg and R Sandberg. (2013). Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat Methods 10:1096-1098.
-
(2013)
Nat Methods
, vol.10
, pp. 1096-1098
-
-
Picelli, S.1
Bjorklund, A.K.2
Faridani, O.R.3
Sagasser, S.4
Winberg, G.5
Sandberg, R.6
-
14
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam S, U Kjallquist, A Moliner, P Zajac, JB Fan, P Lonnerberg and S Linnarsson. (2011). Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res 21:1160-1167.
-
(2011)
Genome Res
, vol.21
, pp. 1160-1167
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
Linnarsson, S.7
-
15
-
-
84879692466
-
Comparative analysis of RNA sequencing methods for degraded or low-input samples
-
Adiconis X, D Borges-Rivera, R Satija, DS DeLuca, MA Busby, AM Berlin, A Sivachenko, DA Thompson, A Wysoker, et al. (2013). Comparative analysis of RNA sequencing methods for degraded or low-input samples. Nat Methods 10:623-629.
-
(2013)
Nat Methods
, vol.10
, pp. 623-629
-
-
Adiconis, X.1
Borges-Rivera, D.2
Satija, R.3
DeLuca, D.S.4
Busby, M.A.5
Berlin, A.M.6
Sivachenko, A.7
Thompson, D.A.8
Wysoker, A.9
-
16
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell C, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, NJ Lennon, KJ Livak, TS Mikkelsen and JL Rinn. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol 32:381-386.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
17
-
-
84903185013
-
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
-
Shalek AK, R Satija, J Shuga, JJ Trombetta, D Gennert, D Lu, P Chen, RS Gertner, JT Gaublomme, et al. (2014). Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. Nature 510:363-369.
-
(2014)
Nature
, vol.510
, pp. 363-369
-
-
Shalek, A.K.1
Satija, R.2
Shuga, J.3
Trombetta, J.J.4
Gennert, D.5
Lu, D.6
Chen, P.7
Gertner, R.S.8
Gaublomme, J.T.9
-
18
-
-
84922321862
-
Lowcoverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
-
Pollen AA, TJ Nowakowski, J Shuga, X Wang, AA Leyrat, JH Lui, N Li, L Szpankowski, B Fowler, et al. (2014). Lowcoverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat Biotechnol 32:1053-1058.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 1053-1058
-
-
Pollen, A.A.1
Nowakowski, T.J.2
Shuga, J.3
Wang, X.4
Leyrat, A.A.5
Lui, J.H.6
Li, N.7
Szpankowski, L.8
Fowler, B.9
-
19
-
-
84900529199
-
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
-
Treutlein B, DG Brownfield, AR Wu, NF Neff, GL Mantalas, FH Espinoza, TJ Desai, MA Krasnow and SR Quake. (2014). Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 509:371-375.
-
(2014)
Nature
, vol.509
, pp. 371-375
-
-
Treutlein, B.1
Brownfield, D.G.2
Wu, A.R.3
Neff, N.F.4
Mantalas, G.L.5
Espinoza, F.H.6
Desai, T.J.7
Krasnow, M.A.8
Quake, S.R.9
-
20
-
-
84929684998
-
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells
-
Klein AM, L Mazutis, I Akartuna, N Tallapragada, A Veres, V Li, L Peshkin, DA Weitz and MW Kirschner. (2015). Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell 161:1187-1201.
-
(2015)
Cell
, vol.161
, pp. 1187-1201
-
-
Klein, A.M.1
Mazutis, L.2
Akartuna, I.3
Tallapragada, N.4
Veres, A.5
Li, V.6
Peshkin, L.7
Weitz, D.A.8
Kirschner, M.W.9
-
21
-
-
84929684999
-
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
-
Macosko EZ, A Basu, R Satija, J Nemesh, K Shekhar, M Goldman, I Tirosh, AR Bialas, N Kamitaki, et al. (2015). Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161:1202-1214.
-
(2015)
Cell
, vol.161
, pp. 1202-1214
-
-
Macosko, E.Z.1
Basu, A.2
Satija, R.3
Nemesh, J.4
Shekhar, K.5
Goldman, M.6
Tirosh, I.7
Bialas, A.R.8
Kamitaki, N.9
-
22
-
-
84986243076
-
Startups use short-read data to expand long-read sequencing market
-
Eisenstein M. (2015). Startups use short-read data to expand long-read sequencing market. Nat Biotechnol 33: 433-435.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 433-435
-
-
Eisenstein, M.1
-
23
-
-
85009446777
-
Massively parallel digital transcriptional profiling of single cells
-
Zheng GX, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, SB Ziraldo, TD Wheeler, GP McDermott, et al. (2017). Massively parallel digital transcriptional profiling of single cells. Nat Commun 8:14049.
-
(2017)
Nat Commun
, vol.8
, pp. 14049
-
-
Zheng, G.X.1
Terry, J.M.2
Belgrader, P.3
Ryvkin, P.4
Bent, Z.W.5
Wilson, R.6
Ziraldo, S.B.7
Wheeler, T.D.8
McDermott, G.P.9
-
24
-
-
84984677948
-
Disentangling neural cell diversity using single-cell transcriptomics
-
Poulin JF, B Tasic, J Hjerling-Leffler, JM Trimarchi and R Awatramani. (2016). Disentangling neural cell diversity using single-cell transcriptomics. Nat Neurosci 19:1131-1141.
-
(2016)
Nat Neurosci
, vol.19
, pp. 1131-1141
-
-
Poulin, J.F.1
Tasic, B.2
Hjerling-Leffler, J.3
Trimarchi, J.M.4
Awatramani, R.5
-
25
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. (2007). Chromatin modifications and their function. Cell 128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
26
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent L, E Wong, G Li, T Huynh, A Tsirigos, CT Ong, HM Low, KWK Sung, I Rigoutsos and J Loring. (2010). Dynamic changes in the human methylome during differentiation. Genome Res 20:320-331.
-
(2010)
Genome Res
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
Ong, C.T.6
Low, H.M.7
Sung, K.W.K.8
Rigoutsos, I.9
Loring, J.10
-
27
-
-
84905405443
-
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
-
Smallwood SA, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, SR Andrews, O Stegle, W Reik and G Kelsey. (2014). Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat Methods 11: 817-820.
-
(2014)
Nat Methods
, vol.11
, pp. 817-820
-
-
Smallwood, S.A.1
Lee, H.J.2
Angermueller, C.3
Krueger, F.4
Saadeh, H.5
Peat, J.6
Andrews, S.R.7
Stegle, O.8
Reik, W.9
Kelsey, G.10
-
28
-
-
84890526238
-
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
-
Guo H, P Zhu, X Wu, X Li, L Wen and F Tang. (2013). Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing. Genome Res 23:2126-2135.
-
(2013)
Genome Res
, vol.23
, pp. 2126-2135
-
-
Guo, H.1
Zhu, P.2
Wu, X.3
Li, X.4
Wen, L.5
Tang, F.6
-
29
-
-
84929463154
-
Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing
-
Guo H, P Zhu, F Guo, X Li, X Wu, X Fan, L Wen and F Tang. (2015). Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing. Nat Protoc 10:645-659.
-
(2015)
Nat Protoc
, vol.10
, pp. 645-659
-
-
Guo, H.1
Zhu, P.2
Guo, F.3
Li, X.4
Wu, X.5
Fan, X.6
Wen, L.7
Tang, F.8
-
30
-
-
84963632004
-
Single-cell epigenomics: Powerful new methods for understanding gene regulation and cell identity
-
Clark SJ, HJ Lee, SA Smallwood, G Kelsey and W Reik. (2016). Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity. Genome Biol 17:72.
-
(2016)
Genome Biol
, vol.17
, pp. 72
-
-
Clark, S.J.1
Lee, H.J.2
Smallwood, S.A.3
Kelsey, G.4
Reik, W.5
-
31
-
-
84946545109
-
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
-
Rotem A, O Ram, N Shoresh, RA Sperling, A Goren, DA Weitz and BE Bernstein. (2015). Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state. Nat Biotechnol 33:1165-1172.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 1165-1172
-
-
Rotem, A.1
Ram, O.2
Shoresh, N.3
Sperling, R.A.4
Goren, A.5
Weitz, D.A.6
Bernstein, B.E.7
-
32
-
-
84937857359
-
Single-cell chromatin accessibility reveals principles of regulatory variation
-
Buenrostro JD, B Wu, UM Litzenburger, D Ruff, ML Gonzales, MP Snyder, HY Chang and WJ Greenleaf. (2015). Single-cell chromatin accessibility reveals principles of regulatory variation. Nature 523:486-490.
-
(2015)
Nature
, vol.523
, pp. 486-490
-
-
Buenrostro, J.D.1
Wu, B.2
Litzenburger, U.M.3
Ruff, D.4
Gonzales, M.L.5
Snyder, M.P.6
Chang, H.Y.7
Greenleaf, W.J.8
-
33
-
-
84949227165
-
Genome-wide detection of DNase i hypersensitive sites in single cells and FFPE tissue samples
-
Jin W, Q Tang, M Wan, K Cui, Y Zhang, G Ren, B Ni, J Sklar, TM Przytycka, et al. (2015). Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples. Nature 528:142-146.
-
(2015)
Nature
, vol.528
, pp. 142-146
-
-
Jin, W.1
Tang, Q.2
Wan, M.3
Cui, K.4
Zhang, Y.5
Ren, G.6
Ni, B.7
Sklar, J.8
Przytycka, T.M.9
-
34
-
-
84948587544
-
Genome-wide maps of nuclear lamina interactions in single human cells
-
Kind J, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, B Lajoie, CA de Graaf, et al. (2015). Genome-wide maps of nuclear lamina interactions in single human cells. Cell 163:134-147.
-
(2015)
Cell
, vol.163
, pp. 134-147
-
-
Kind, J.1
Pagie, L.2
De Vries, S.S.3
Nahidiazar, L.4
Dey, S.S.5
Bienko, M.6
Zhan, Y.7
Lajoie, B.8
De Graaf, C.A.9
-
35
-
-
84923365432
-
Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform
-
Han L, X Zi, LX Garmire, Y Wu, SM Weissman, X Pan and R Fan. (2014). Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform. Sci Rep 4:6485.
-
(2014)
Sci Rep
, vol.4
, pp. 6485
-
-
Han, L.1
Zi, X.2
Garmire, L.X.3
Wu, Y.4
Weissman, S.M.5
Pan, X.6
Fan, R.7
-
36
-
-
84930178333
-
G&T-seq: Parallel sequencing of single-cell genomes and transcriptomes
-
Macaulay IC, W Haerty, P Kumar, YI Li, TX Hu, MJ Teng, M Goolam, N Saurat, P Coupland, et al. (2015). G&T-seq: parallel sequencing of single-cell genomes and transcriptomes. Nat Methods 12:519-522.
-
(2015)
Nat Methods
, vol.12
, pp. 519-522
-
-
Macaulay, I.C.1
Haerty, W.2
Kumar, P.3
Li, Y.I.4
Hu, T.X.5
Teng, M.J.6
Goolam, M.7
Saurat, N.8
Coupland, P.9
-
37
-
-
84924423596
-
Integrated genome and transcriptome sequencing of the same cell
-
Dey SS, L Kester, B Spanjaard, M Bienko and A van Oudenaarden. (2015). Integrated genome and transcriptome sequencing of the same cell. Nat Biotechnol 33:285-289.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 285-289
-
-
Dey, S.S.1
Kester, L.2
Spanjaard, B.3
Bienko, M.4
Van Oudenaarden, A.5
-
38
-
-
84960091878
-
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas
-
Hou Y, H Guo, C Cao, X Li, B Hu, P Zhu, X Wu, L Wen, F Tang, Y Huang and J Peng. (2016). Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. Cell Res 26: 304-319.
-
(2016)
Cell Res
, vol.26
, pp. 304-319
-
-
Hou, Y.1
Guo, H.2
Cao, C.3
Li, X.4
Hu, B.5
Zhu, P.6
Wu, X.7
Wen, L.8
Tang, F.9
Huang, Y.10
Peng, J.11
-
39
-
-
70349330763
-
Regeneration next: Toward heart stem cell therapeutics
-
Hansson EM, ME Lindsay and KR Chien. (2009). Regeneration next: toward heart stem cell therapeutics. Cell Stem Cell 5:364-377.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 364-377
-
-
Hansson, E.M.1
Lindsay, M.E.2
Chien, K.R.3
-
40
-
-
77955334500
-
How to make a heart: The origin and regulation of cardiac progenitor cells
-
Vincent SD and ME Buckingham. (2010). How to make a heart: the origin and regulation of cardiac progenitor cells. Curr Top Dev Biol 90:1-41.
-
(2010)
Curr Top Dev Biol
, vol.90
, pp. 1-41
-
-
Vincent, S.D.1
Buckingham, M.E.2
-
41
-
-
84863229669
-
Distinct compartments of the proepicardial organ give rise to coronary vascular endothelial cells
-
Katz TC, MK Singh, K Degenhardt, J Rivera-Feliciano, RL Johnson, JA Epstein and CJ Tabin. (2012). Distinct compartments of the proepicardial organ give rise to coronary vascular endothelial cells. Dev Cell 22:639-650.
-
(2012)
Dev Cell
, vol.22
, pp. 639-650
-
-
Katz, T.C.1
Singh, M.K.2
Degenhardt, K.3
Rivera-Feliciano, J.4
Johnson, R.L.5
Epstein, J.A.6
Tabin, C.J.7
-
42
-
-
65249137151
-
Tbx18 and the fate of epicardial progenitors
-
discussion E9-E10
-
Christoffels VM, T Grieskamp, J Norden,MT Mommersteeg, C Rudat and A Kispert. (2009). Tbx18 and the fate of epicardial progenitors. Nature 458:E8-E9; discussion E9-E10.
-
(2009)
Nature
, vol.458
, pp. E8-E9
-
-
Christoffels, V.M.1
Grieskamp, T.2
Norden, J.3
Mommersteeg, M.T.4
Rudat, C.5
Kispert, A.6
-
43
-
-
46449089721
-
A myocardial lineage derives from Tbx18 epicardial cells
-
Cai CL, JC Martin, Y Sun, L Cui, L Wang, K Ouyang, L Yang, L Bu, X Liang, et al. (2008). A myocardial lineage derives from Tbx18 epicardial cells. Nature 454:104-108.
-
(2008)
Nature
, vol.454
, pp. 104-108
-
-
Cai, C.L.1
Martin, J.C.2
Sun, Y.3
Cui, L.4
Wang, L.5
Ouyang, K.6
Yang, L.7
Bu, L.8
Liang, X.9
-
44
-
-
64249107059
-
Evidence for cardiomyocyte renewal in humans
-
Bergmann O, RD Bhardwaj, S Bernard, S Zdunek, F Barnabé-Heider, S Walsh, J Zupicich, K Alkass, BA Buchholz and H Druid. (2009). Evidence for cardiomyocyte renewal in humans. Science 324:98-102.
-
(2009)
Science
, vol.324
, pp. 98-102
-
-
Bergmann, O.1
Bhardwaj, R.D.2
Bernard, S.3
Zdunek, S.4
Barnabé-Heider, F.5
Walsh, S.6
Zupicich, J.7
Alkass, K.8
Buchholz, B.A.9
Druid, H.10
-
45
-
-
10744228523
-
Adult cardiac stem cells are multipotent and support myocardial regeneration
-
Beltrami AP, L Barlucchi, D Torella, M Baker, F Limana, S Chimenti, H Kasahara, M Rota, E Musso and K Urbanek. (2003). Adult cardiac stem cells are multipotent and support myocardial regeneration. Cell 114:763-776.
-
(2003)
Cell
, vol.114
, pp. 763-776
-
-
Beltrami, A.P.1
Barlucchi, L.2
Torella, D.3
Baker, M.4
Limana, F.5
Chimenti, S.6
Kasahara, H.7
Rota, M.8
Musso, E.9
Urbanek, K.10
-
46
-
-
79952065525
-
Transient regenerative potential of the neonatal mouse heart
-
Porrello ER, AI Mahmoud, E Simpson, JA Hill, JA Richardson, EN Olson and HA Sadek. (2011). Transient regenerative potential of the neonatal mouse heart. Science 331:1078-1080.
-
(2011)
Science
, vol.331
, pp. 1078-1080
-
-
Porrello, E.R.1
Mahmoud, A.I.2
Simpson, E.3
Hill, J.A.4
Richardson, J.A.5
Olson, E.N.6
Sadek, H.A.7
-
47
-
-
84872611623
-
Mammalian heart renewal by preexisting cardiomyocytes
-
Senyo SE, ML Steinhauser, CL Pizzimenti, VK Yang, L Cai, M Wang, T-D Wu, J-L Guerquin-Kern, CP Lechene and RT Lee. (2013). Mammalian heart renewal by preexisting cardiomyocytes. Nature 493:433-436.
-
(2013)
Nature
, vol.493
, pp. 433-436
-
-
Senyo, S.E.1
Steinhauser, M.L.2
Pizzimenti, C.L.3
Yang, V.K.4
Cai, L.5
Wang, M.6
Wu, T.-D.7
Guerquin-Kern, J.-L.8
Lechene, C.P.9
Lee, R.T.10
-
48
-
-
84969787245
-
Tracing haematopoietic stem cell formation at single-cell resolution
-
Zhou F, X Li, W Wang, P Zhu, J Zhou, W He, M Ding, F Xiong, X Zheng, et al. (2016). Tracing haematopoietic stem cell formation at single-cell resolution. Nature 533: 487-492.
-
(2016)
Nature
, vol.533
, pp. 487-492
-
-
Zhou, F.1
Li, X.2
Wang, W.3
Zhu, P.4
Zhou, J.5
He, W.6
Ding, M.7
Xiong, F.8
Zheng, X.9
-
49
-
-
79955507001
-
Recapitulation of developmental cardiogenesis governs the morphological and functional regeneration of adult newt hearts following injury
-
Witman N, B Murtuza, B Davis, A Arner and JI Morrison. (2011). Recapitulation of developmental cardiogenesis governs the morphological and functional regeneration of adult newt hearts following injury. Dev Biol 354:67-76.
-
(2011)
Dev Biol
, vol.354
, pp. 67-76
-
-
Witman, N.1
Murtuza, B.2
Davis, B.3
Arner, A.4
Morrison, J.I.5
-
50
-
-
20244378183
-
Activation of Notch signaling pathway precedes heart regeneration in zebrafish
-
Raya A, CM Koth, D Buscher, Y Kawakami, T Itoh, RM Raya, G Sternik, HJ Tsai, C Rodriguez-Esteban and JC Izpisua-Belmonte. (2003). Activation of Notch signaling pathway precedes heart regeneration in zebrafish. Proc Natl Acad Sci U S A 100 Suppl 1:11889-11895.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 11889-11895
-
-
Raya, A.1
Koth, C.M.2
Buscher, D.3
Kawakami, Y.4
Itoh, T.5
Raya, R.M.6
Sternik, G.7
Tsai, H.J.8
Rodriguez-Esteban, C.9
Izpisua-Belmonte, J.C.10
-
51
-
-
79960778952
-
The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion
-
Wang J, D Panakova, K Kikuchi, JE Holdway, M Gemberling, JS Burris, SP Singh, AL Dickson, YF Lin, et al. (2011). The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion. Development 138:3421-3430.
-
(2011)
Development
, vol.138
, pp. 3421-3430
-
-
Wang, J.1
Panakova, D.2
Kikuchi, K.3
Holdway, J.E.4
Gemberling, M.5
Burris, J.S.6
Singh, S.P.7
Dickson, A.L.8
Lin, Y.F.9
-
52
-
-
79953678403
-
The zebrafish heart regenerates after cryoinjury-induced myocardial infarction
-
Chablais F, J Veit, G Rainer and A Jazwinska. (2011). The zebrafish heart regenerates after cryoinjury-induced myocardial infarction. BMC Dev Biol 11:21.
-
(2011)
BMC Dev Biol
, vol.11
, pp. 21
-
-
Chablais, F.1
Veit, J.2
Rainer, G.3
Jazwinska, A.4
-
53
-
-
77950200829
-
Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation
-
Jopling C, E Sleep, M Raya, M Marti, A Raya and JC Izpisua Belmonte. (2010). Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation. Nature 464:606-609.
-
(2010)
Nature
, vol.464
, pp. 606-609
-
-
Jopling, C.1
Sleep, E.2
Raya, M.3
Marti, M.4
Raya, A.5
Belmonte, J.C.I.6
-
54
-
-
77950201708
-
Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes
-
Kikuchi K, JE Holdway, AA Werdich, RM Anderson, Y Fang, GF Egnaczyk, T Evans, CA Macrae, DY Stainier and KD Poss. (2010). Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes. Nature 464: 601-605.
-
(2010)
Nature
, vol.464
, pp. 601-605
-
-
Kikuchi, K.1
Holdway, J.E.2
Werdich, A.A.3
Anderson, R.M.4
Fang, Y.5
Egnaczyk, G.F.6
Evans, T.7
Macrae, C.A.8
Stainier, D.Y.9
Poss, K.D.10
-
55
-
-
84964799404
-
Life-long preservation of the regenerative capacity in the fin and heart in zebrafish
-
Itou J, H Kawakami, T Burgoyne and Y Kawakami. (2012). Life-long preservation of the regenerative capacity in the fin and heart in zebrafish. Biol Open 1:739-746.
-
(2012)
Biol Open
, vol.1
, pp. 739-746
-
-
Itou, J.1
Kawakami, H.2
Burgoyne, T.3
Kawakami, Y.4
-
56
-
-
84904207385
-
Comment on ''Do neonatal mouse hearts regenerate following heart apex resection''
-
Kotlikoff MI, M Hesse and BK Fleischmann. (2014). Comment on ''Do neonatal mouse hearts regenerate following heart apex resection''? Stem Cell Reports 3:2.
-
(2014)
Stem Cell Reports
, vol.3
, pp. 2
-
-
Kotlikoff, M.I.1
Hesse, M.2
Fleischmann, B.K.3
-
57
-
-
84924864440
-
Programming and reprogramming a human heart cell
-
Sahara M, F Santoro and KR Chien. (2015). Programming and reprogramming a human heart cell. EMBO J 34: 710-738.
-
(2015)
EMBO J
, vol.34
, pp. 710-738
-
-
Sahara, M.1
Santoro, F.2
Chien, K.R.3
-
58
-
-
0032126258
-
Animal models of human cardiovascular disease, heart failure and hypertrophy
-
Hasenfuss G. (1998). Animal models of human cardiovascular disease, heart failure and hypertrophy. Cardiovasc Res 39:60-76.
-
(1998)
Cardiovasc Res
, vol.39
, pp. 60-76
-
-
Hasenfuss, G.1
-
60
-
-
84930787836
-
Meta-analysis of cell therapy trials for patients with heart failure
-
Fisher SA, C Doree, A Mathur and E Martin-Rendon. (2015). Meta-analysis of cell therapy trials for patients with heart failure. Circ Res 116:1361-1377.
-
(2015)
Circ Res
, vol.116
, pp. 1361-1377
-
-
Fisher, S.A.1
Doree, C.2
Mathur, A.3
Martin-Rendon, E.4
-
61
-
-
84940652524
-
Microfluidic single-cell analysis of transplanted human induced pluripotent stem cell-derived cardiomyocytes after acute myocardial infarction
-
Ong SG, BC Huber, WH Lee, K Kodo, AD Ebert, Y Ma, PK Nguyen, S Diecke, WY Chen and JC Wu. (2015). Microfluidic single-cell analysis of transplanted human induced pluripotent stem cell-derived cardiomyocytes after acute myocardial infarction. Circulation 132:762-771.
-
(2015)
Circulation
, vol.132
, pp. 762-771
-
-
Ong, S.G.1
Huber, B.C.2
Lee, W.H.3
Kodo, K.4
Ebert, A.D.5
Ma, Y.6
Nguyen, P.K.7
Diecke, S.8
Chen, W.Y.9
Wu, J.C.10
-
62
-
-
77958614288
-
Dedifferentiation and proliferation of mammalian cardiomyocytes
-
Zhang Y, T-S Li, S-T Lee, KA Wawrowsky, K Cheng, G Galang, K Malliaras, MR Abraham, C Wang and E Marbán. (2010). Dedifferentiation and proliferation of mammalian cardiomyocytes. PLoS One 5:e12559.
-
(2010)
PLoS One
, vol.5
, pp. e12559
-
-
Zhang, Y.1
Li, T.-S.2
Lee, S.-T.3
Wawrowsky, K.A.4
Cheng, K.5
Galang, G.6
Malliaras, K.7
Abraham, M.R.8
Wang, C.9
Marbán, E.10
-
63
-
-
80755156297
-
Oncostatin M is a major mediator of cardiomyocyte dedifferentiation and remodeling
-
Kubin T, J Poling, S Kostin, P Gajawada, S Hein, W Rees, A Wietelmann, M Tanaka, H Lorchner and S Schimanski. (2011). Oncostatin M is a major mediator of cardiomyocyte dedifferentiation and remodeling. Cell Stem Cell 9: 420-432.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 420-432
-
-
Kubin, T.1
Poling, J.2
Kostin, S.3
Gajawada, P.4
Hein, S.5
Rees, W.6
Wietelmann, A.7
Tanaka, M.8
Lorchner, H.9
Schimanski, S.10
-
64
-
-
84949781880
-
Dedifferentiation, transdifferentiation, and proliferation: Mechanisms underlying cardiac muscle regeneration in zebrafish
-
Kikuchi K. (2015). Dedifferentiation, transdifferentiation, and proliferation: mechanisms underlying cardiac muscle regeneration in zebrafish. Curr Pathobiol Rep 3:81-88.
-
(2015)
Curr Pathobiol Rep
, vol.3
, pp. 81-88
-
-
Kikuchi, K.1
-
65
-
-
45949109693
-
Mediators of reprogramming: Transcription factors and transitions through mitosis
-
Egli D, G Birkhoff and K Eggan. (2008). Mediators of reprogramming: transcription factors and transitions through mitosis. Nat Rev Mol Cell Biol 9:505-516.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 505-516
-
-
Egli, D.1
Birkhoff, G.2
Eggan, K.3
-
66
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang HH, M Hemberg, M Barahona, DE Ingber and S Huang. (2008). Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
67
-
-
33644856456
-
Stochastic spineless expression creates the retinal mosaic for colour vision
-
Wernet MF, EO Mazzoni, A Cxelik, DM Duncan, I Duncan and C Desplan. (2006). Stochastic spineless expression creates the retinal mosaic for colour vision. Nature 440: 174-180.
-
(2006)
Nature
, vol.440
, pp. 174-180
-
-
Wernet, M.F.1
Mazzoni, E.O.2
Cxelik, A.3
Duncan, D.M.4
Duncan, I.5
Desplan, C.6
-
68
-
-
16644373292
-
Noise minimization in eukaryotic gene expression
-
Fraser HB, AE Hirsh, G Giaever, J Kumm and MB Eisen. (2004). Noise minimization in eukaryotic gene expression. PLoS Biol 2:834-838.
-
(2004)
PLoS Biol
, vol.2
, pp. 834-838
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
Kumm, J.4
Eisen, M.B.5
-
69
-
-
77951643590
-
Identifying single-cell molecular programs by stochastic profiling
-
Janes KA, C-C Wang, KJ Holmberg, K Cabral and JS Brugge. (2010). Identifying single-cell molecular programs by stochastic profiling. Nat Methods 7:311-317.
-
(2010)
Nat Methods
, vol.7
, pp. 311-317
-
-
Janes, K.A.1
Wang, C.-C.2
Holmberg, K.J.3
Cabral, K.4
Brugge, J.S.5
-
70
-
-
84964545059
-
Single-cell transcriptome sequencing: Recent advances and remaining challenges
-
Liu S and C Trapnell. (2016). Single-cell transcriptome sequencing: recent advances and remaining challenges. F1000Res 5:pii: F1000 Faculty Rev-182.
-
(2016)
F1000Res
, vol.5
-
-
Liu, S.1
Trapnell, C.2
-
71
-
-
84912527013
-
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
-
Wang C, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, H Fang, H Hong, J Shen, et al. (2014). The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. Nat Biotechnol 32:926-932.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 926-932
-
-
Wang, C.1
Gong, B.2
Bushel, P.R.3
Thierry-Mieg, J.4
Thierry-Mieg, D.5
Xu, J.6
Fang, H.7
Hong, H.8
Shen, J.9
-
72
-
-
84898618335
-
Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells
-
Zhao S, WP Fung-Leung, A Bittner, K Ngo and X Liu. (2014). Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells. PLoS One 9: e78644.
-
(2014)
PLoS One
, vol.9
, pp. e78644
-
-
Zhao, S.1
Fung-Leung, W.P.2
Bittner, A.3
Ngo, K.4
Liu, X.5
-
73
-
-
79957665988
-
Microarrays, deep sequencing and the true measure of the transcriptome
-
Malone JH and B Oliver. (2011). Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol 9:34.
-
(2011)
BMC Biol
, vol.9
, pp. 34
-
-
Malone, J.H.1
Oliver, B.2
-
74
-
-
84857131354
-
Single cell transcriptional profiling of adult mouse cardiomyocytes
-
Flynn JM, LF Santana and S Melov. (2011). Single cell transcriptional profiling of adult mouse cardiomyocytes. J Vis Exp e3302.
-
(2011)
J Vis Exp
, pp. e3302
-
-
Flynn, J.M.1
Santana, L.F.2
Melov, S.3
-
75
-
-
84923271626
-
Identification of cardiovascular lineage descendants at single-cell resolution
-
Li G, K Plonowska, R Kuppusamy, A Sturzu and SM Wu. (2015). Identification of cardiovascular lineage descendants at single-cell resolution. Development 142:846-857.
-
(2015)
Development
, vol.142
, pp. 846-857
-
-
Li, G.1
Plonowska, K.2
Kuppusamy, R.3
Sturzu, A.4
Wu, S.M.5
-
76
-
-
84905242471
-
Chemically defined generation of human cardiomyocytes
-
Burridge PW, E Matsa, P Shukla, ZC Lin, JM Churko, AD Ebert, F Lan, S Diecke, B Huber, et al. (2014). Chemically defined generation of human cardiomyocytes. Nat Methods 11:855-860.
-
(2014)
Nat Methods
, vol.11
, pp. 855-860
-
-
Burridge, P.W.1
Matsa, E.2
Shukla, P.3
Lin, Z.C.4
Churko, J.M.5
Ebert, A.D.6
Lan, F.7
Diecke, S.8
Huber, B.9
-
77
-
-
84934964374
-
Paracrine action of mesenchymal stem cells revealed by single cell gene profiling in infarcted murine hearts
-
Yao Y, J Huang, Y Geng, H Qian, F Wang, X Liu, M Shang, S Nie, N Liu, et al. (2015). Paracrine action of mesenchymal stem cells revealed by single cell gene profiling in infarcted murine hearts. PLoS One 10:e0129164.
-
(2015)
PLoS One
, vol.10
, pp. e0129164
-
-
Yao, Y.1
Huang, J.2
Geng, Y.3
Qian, H.4
Wang, F.5
Liu, X.6
Shang, M.7
Nie, S.8
Liu, N.9
-
78
-
-
84949058403
-
Single-cell expression profiling reveals a dynamic state of cardiac precursor cells in the early mouse embryo
-
Kokkinopoulos I, H Ishida, R Saba, P Ruchaya, C Cabrera, M Struebig, M Barnes, A Terry, M Kaneko, et al. (2015). Single-cell expression profiling reveals a dynamic state of cardiac precursor cells in the early mouse embryo. PLoS One 10:e0140831.
-
(2015)
PLoS One
, vol.10
, pp. e0140831
-
-
Kokkinopoulos, I.1
Ishida, H.2
Saba, R.3
Ruchaya, P.4
Cabrera, C.5
Struebig, M.6
Barnes, M.7
Terry, A.8
Kaneko, M.9
-
79
-
-
84997343111
-
Single-cell resolution of temporal gene expression during heart development
-
DeLaughter DM, AG Bick, H Wakimoto, D McKean, JM Gorham, IS Kathiriya, JT Hinson, J Homsy, J Gray, et al. (2016). Single-cell resolution of temporal gene expression during heart development. Dev Cell 39:480-490.
-
(2016)
Dev Cell
, vol.39
, pp. 480-490
-
-
DeLaughter, D.M.1
Bick, A.G.2
Wakimoto, H.3
McKean, D.4
Gorham, J.M.5
Kathiriya, I.S.6
Hinson, J.T.7
Homsy, J.8
Gray, J.9
-
80
-
-
84978761773
-
Resolving early mesoderm diversification through singlecell expression profiling
-
Scialdone A, Y Tanaka, W Jawaid, V Moignard, NK Wilson, IC Macaulay, JC Marioni and B Gottgens. (2016). Resolving early mesoderm diversification through singlecell expression profiling. Nature 535:289-293.
-
(2016)
Nature
, vol.535
, pp. 289-293
-
-
Scialdone, A.1
Tanaka, Y.2
Jawaid, W.3
Moignard, V.4
Wilson, N.K.5
Macaulay, I.C.6
Marioni, J.C.7
Gottgens, B.8
-
81
-
-
84954512505
-
Single epicardial cell transcriptome sequencing identifies Caveolin 1 as an essential factor in zebrafish heart regeneration
-
Cao J, A Navis, BD Cox, AL Dickson, M Gemberling, R Karra, M Bagnat and KD Poss. (2016). Single epicardial cell transcriptome sequencing identifies Caveolin 1 as an essential factor in zebrafish heart regeneration. Development 143:232-243.
-
(2016)
Development
, vol.143
, pp. 232-243
-
-
Cao, J.1
Navis, A.2
Cox, B.D.3
Dickson, A.L.4
Gemberling, M.5
Karra, R.6
Bagnat, M.7
Poss, K.D.8
-
82
-
-
84961778087
-
Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion
-
Freeman BT, JP Jung and BM Ogle. (2016). Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. Sci Rep 6:23270.
-
(2016)
Sci Rep
, vol.6
, pp. 23270
-
-
Freeman, B.T.1
Jung, J.P.2
Ogle, B.M.3
-
83
-
-
85012069825
-
Dpath software reveals hierarchical haemato-endothelial lineages of Etv2 progenitors based on single-cell transcriptome analysis
-
Gong W, TL Rasmussen, BN Singh, N Koyano-Nakagawa, W Pan and DJ Garry. (2017). Dpath software reveals hierarchical haemato-endothelial lineages of Etv2 progenitors based on single-cell transcriptome analysis. Nat Commun 8:14362.
-
(2017)
Nat Commun
, vol.8
, pp. 14362
-
-
Gong, W.1
Rasmussen, T.L.2
Singh, B.N.3
Koyano-Nakagawa, N.4
Pan, W.5
Garry, D.J.6
|