-
1
-
-
84885639650
-
Authenticating the use of dried seahorses in the traditional Chinese medicine market in Taiwan using molecular forensics
-
Chang C, Jang-Liaw N, Lin Y et al. Authenticating the use of dried seahorses in the traditional Chinese medicine market in Taiwan using molecular forensics. J Food Drug Anal 2013;21:310-6.
-
(2013)
J Food Drug Anal
, vol.21
, pp. 310-316
-
-
Chang, C.1
Jang-Liaw, N.2
Lin, Y.3
-
2
-
-
84966355927
-
DNA barcoding of the endangered aquilaria (Thymelaeaceae) and its application in species authentication of agarwood products traded in the market
-
Lee SY, Ng WL, Mahat MN et al. DNA barcoding of the endangered aquilaria (Thymelaeaceae) and its application in species authentication of agarwood products traded in the market. PLoS One 2016;11:e0154631.
-
(2016)
PLoS One
, vol.11
-
-
Lee, S.Y.1
Ng, W.L.2
Mahat, M.N.3
-
3
-
-
0242417534
-
Conservation: reproductive collapse in saiga antelope harems
-
Milner-Gulland EJ, Bukreeva OM, Coulson T et al. Conservation: reproductive collapse in saiga antelope harems. Nature 2003;422:135.
-
(2003)
Nature
, vol.422
, pp. 135
-
-
Milner-Gulland, E.J.1
Bukreeva, O.M.2
Coulson, T.3
-
4
-
-
85032855319
-
-
Accessed 12 September
-
CITES.www.cites.org. Accessed 12 September 2017.
-
(2017)
-
-
-
5
-
-
84901954160
-
Biological ingredient analysis of traditional Chinese medicine preparation based on highthroughput sequencing: the story for Liuwei Dihuang Wan
-
Cheng X, Su X, Chen X et al. Biological ingredient analysis of traditional Chinese medicine preparation based on highthroughput sequencing: the story for Liuwei Dihuang Wan. Sci Rep 2015;4:5147.
-
(2015)
Sci Rep
, vol.4
, pp. 5147
-
-
Cheng, X.1
Su, X.2
Chen, X.3
-
6
-
-
84860229555
-
Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns
-
Coghlan ML, Haile J, Houston J et al. Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns. PLoS Genet 2012;8:e1002657.
-
(2012)
PLoS Genet
, vol.8
-
-
Coghlan, M.L.1
Haile, J.2
Houston, J.3
-
7
-
-
84949657290
-
Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM)
-
Coghlan ML, Maker G, Crighton E et al. Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM). Sci Rep 2015;5:17475.
-
(2015)
Sci Rep
, vol.5
, pp. 17475
-
-
Coghlan, M.L.1
Maker, G.2
Crighton, E.3
-
8
-
-
84971356848
-
Authentication of herbal supplements using next-generation sequencing
-
Ivanova NV, Kuzmina ML, Braukmann TWA et al. Authentication of herbal supplements using next-generation sequencing. PLoS One 2016;11:e0156426.
-
(2016)
PLoS One
, vol.11
-
-
Ivanova, N.V.1
Kuzmina, M.L.2
Braukmann, T.W.A.3
-
9
-
-
84859598363
-
Towards nextgeneration biodiversity assessment using DNA metabarcoding
-
Taberlet P, Coissac E, Pompanon F et al. Towards nextgeneration biodiversity assessment using DNA metabarcoding. Mol Ecol 2012;21:2045-50.
-
(2012)
Mol Ecol
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
-
10
-
-
84968611354
-
Advances in DNA metabarcoding for food and wildlife forensic species identification
-
Staats M, Arulandhu AJ, Gravendeel B et al. Advances in DNA metabarcoding for food and wildlife forensic species identification. Anal Bioanal Chem 2016;408: 4615-30.
-
(2016)
Anal Bioanal Chem
, vol.408
, pp. 4615-4630
-
-
Staats, M.1
Arulandhu, A.J.2
Gravendeel, B.3
-
11
-
-
84976351255
-
Large-scale monitoring of plants through environmental DNA metabarcoding of soil: recovery, resolution, and annotation of four DNA markers
-
Fahner NA, Shokralla S, Baird DJ et al. Large-scale monitoring of plants through environmental DNA metabarcoding of soil: recovery, resolution, and annotation of four DNA markers. PLoS One 2016;11:e0157505.
-
(2016)
PLoS One
, vol.11
-
-
Fahner, N.A.1
Shokralla, S.2
Baird, D.J.3
-
12
-
-
85032856508
-
DNA metabarcoding of endangered plant and animal species in seized forensic samples
-
Arulandhu AJ, Staats M, Peelen T et al. DNA metabarcoding of endangered plant and animal species in seized forensic samples. Genome 2015;188-9.
-
(2015)
Genome
, pp. 188-189
-
-
Arulandhu, A.J.1
Staats, M.2
Peelen, T.3
-
13
-
-
84859636609
-
An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding
-
Taylor HR, Harris WE. An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding. Mol Ecol Resour 2012;12:377-88.
-
(2012)
Mol Ecol Resour
, vol.12
, pp. 377-388
-
-
Taylor, H.R.1
Harris, W.E.2
-
14
-
-
84898545912
-
A DNA mini-barcode for land plants
-
Little DP. A DNA mini-barcode for land plants. Mol Ecol Resour 2014;14:437-46.
-
(2014)
Mol Ecol Resour
, vol.14
, pp. 437-446
-
-
Little, D.P.1
-
15
-
-
84988575875
-
DNA barcoding for the identification of botanicals in herbal medicine and dietary supplements: strengths and limitations
-
Parveen I, Gafner S, Techen N et al. DNA barcoding for the identification of botanicals in herbal medicine and dietary supplements: strengths and limitations. Planta Med 2016;82:1225-35.
-
(2016)
Planta Med
, vol.82
, pp. 1225-1235
-
-
Parveen, I.1
Gafner, S.2
Techen, N.3
-
16
-
-
85032858738
-
-
Accessed 12 September
-
RIKILT Wageningen University & Research. www.decathlon-project.eu. Accessed 12 September 2017.
-
(2017)
-
-
-
17
-
-
85032854195
-
-
Accessed 12 September
-
RIKILT Wageningen University & Research.http://decathlonfp7. citespipe-wur.surf-hosted.nl:8080/. Accessed 12 September 2017.
-
(2017)
-
-
-
18
-
-
84871756804
-
DNA based identification of medicinal materials in Chinese patent medicines
-
Chen R, Dong J, Cui X et al. DNA based identification of medicinal materials in Chinese patent medicines. Sci Rep 2012;2:958.
-
(2012)
Sci Rep
, vol.2
, pp. 958
-
-
Chen, R.1
Dong, J.2
Cui, X.3
-
19
-
-
84884870479
-
Practical experiences with an extended screening strategy for genetically modified organisms (GMOs) in real-life samples
-
Scholtens I, Laurensse E, Molenaar B et al. Practical experiences with an extended screening strategy for genetically modified organisms (GMOs) in real-life samples. J Agric Food Chem 2013;61:9097-109.
-
(2013)
J Agric Food Chem
, vol.61
, pp. 9097-9109
-
-
Scholtens, I.1
Laurensse, E.2
Molenaar, B.3
-
20
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray MG, Thompson WF. Rapid isolation of high molecular weight plant DNA. Nucl Acids Res 1980;8:4321-6.
-
(1980)
Nucl Acids Res
, vol.8
, pp. 4321-4326
-
-
Murray, M.G.1
Thompson, W.F.2
-
22
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010;26:2460-1.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
23
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 1997;25:3389-402.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
-
24
-
-
85032853266
-
Development and validation of amulti-locus DNA metabarcoding method to identify endangered species in complex samples SOP
-
Arulandhu AJ, Staats M, Hagelaar R. Development and validation of amulti-locus DNA metabarcoding method to identify endangered species in complex samples SOP. protocols. io. 2017. http://dx.doi.org/10.17504/protocols.io.ixbcfin.
-
(2017)
protocols.io.
-
-
Arulandhu, A.J.1
Staats, M.2
Hagelaar, R.3
-
27
-
-
84889639970
-
SOAP Barcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons
-
Liu S, Li Y, Lu J et al. SOAP Barcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons. Methods Ecol Evol 2013;4: 1142-50.
-
(2013)
Methods Ecol Evol
, vol.4
, pp. 1142-1150
-
-
Liu, S.1
Li, Y.2
Lu, J.3
-
28
-
-
77951297860
-
Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review
-
Gryson N. Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review. Anal Bioanal Chem 2010;396:2003-22.
-
(2010)
Anal Bioanal Chem
, vol.396
, pp. 2003-2022
-
-
Gryson, N.1
-
29
-
-
84941808021
-
High-throughput monitoring of wild bee diversity and abundance via mitogenomics
-
Tang M, Hardman CJ, Ji Y et al. High-throughput monitoring of wild bee diversity and abundance via mitogenomics. Methods Ecol Evol 2015;6:1034-43.
-
(2015)
Methods Ecol Evol
, vol.6
, pp. 1034-1043
-
-
Tang, M.1
Hardman, C.J.2
Ji, Y.3
-
30
-
-
85032855633
-
-
Accessed 12 September
-
CBOL.www.barcodeofwildlife.org. Accessed 12 September 2017.
-
(2017)
-
-
-
31
-
-
84868232013
-
DNA barcoding as a new tool for food traceability
-
Galimberti A, De Mattia F, Losa A et al. DNA barcoding as a new tool for food traceability. Food Res Int 2013; 50:55-63.
-
(2013)
Food Res Int
, vol.50
, pp. 55-63
-
-
Galimberti, A.1
De Mattia, F.2
Losa, A.3
-
33
-
-
84898822986
-
Forensic DNA analysis for animal protection and biodiversity conservation: a review
-
Iyengar A. Forensic DNA analysis for animal protection and biodiversity conservation: a review. J Nat Conserv 2014;22:195-205.
-
(2014)
J Nat Conserv
, vol.22
, pp. 195-205
-
-
Iyengar, A.1
-
34
-
-
85032857466
-
-
Illumina document 15044223
-
16s Metagenomic Sequencing Library Preparation. Illumina document 15044223. https://support.illumina.com/content/dam/illumina-support/documents/documentation/chemistry documentation/16s/16s-metagenomic-libraryprep- guide-15044223-b.pdf.
-
-
-
-
35
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 2011;17: 10-12.
-
(2011)
EMBnet J
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
36
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011;27:863-4.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
37
-
-
85032854302
-
-
FASTX Toolkit v. 0.0.14, http://hannonlab.cshl.edu/fastx toolkit/.
-
-
-
-
38
-
-
85032853767
-
-
ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/.
-
-
-
-
39
-
-
85032857061
-
-
Accessed 12 September
-
UNEP-WCMC.https://speciesplus.net. Accessed 12 September 2017.
-
(2017)
-
-
-
40
-
-
85032854279
-
Supplementary data for "Development and validation of a multilocus DNA metabarcoding method to identify endangered species in complex samples."
-
Arulandhu AJ, Staats M, Hagelaar R et al. Supplementary data for "Development and validation of a multilocus DNA metabarcoding method to identify endangered species in complex samples." GigaScience Database 2017. http://dx.doi.org/10.5524/100330.
-
(2017)
GigaScience Database
-
-
Arulandhu, A.J.1
Staats, M.2
Hagelaar, R.3
-
41
-
-
0003410015
-
The simple fool's guide to PCR, version 2.0
-
Privately published document compiled by Palumbi S. Honolulu, HI: Dept. of Zoology, University of Hawaii
-
Palumbi S, Martin A, Romano S et al. The simple fool's guide to PCR, version 2.0. Privately published document compiled by Palumbi S. Honolulu, HI: Dept. of Zoology, University of Hawaii; 1991:96822.
-
(1991)
-
-
Palumbi, S.1
Martin, A.2
Romano, S.3
-
42
-
-
84897750175
-
A new set of 16S rRNA universal primers for identification of animal species
-
Sarri C, Stamatis C, Sarafidou T et al. A new set of 16S rRNA universal primers for identification of animal species. Food Control 2014;43:35-41.
-
(2014)
Food Control
, vol.43
, pp. 35-41
-
-
Sarri, C.1
Stamatis, C.2
Sarafidou, T.3
-
43
-
-
84878895638
-
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
-
Leray M, Yang JY, Meyer CP et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents. Front Zool 2013; 10:34.
-
(2013)
Front Zool
, vol.10
, pp. 34
-
-
Leray, M.1
Yang, J.Y.2
Meyer, C.P.3
-
44
-
-
84881610261
-
Redesign of PCR primers formitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys
-
Geller J, Meyer C, Parker M et al. Redesign of PCR primers formitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Mol Ecol Resour 2013;13:851-61.
-
(2013)
Mol Ecol Resour
, vol.13
, pp. 851-861
-
-
Geller, J.1
Meyer, C.2
Parker, M.3
-
45
-
-
0034484866
-
Species identification by means of the cytochrome b gene
-
Parson W, Pegoraro K, Niederstätter H et al. Species identification by means of the cytochrome b gene. Int J Legal Med 2000;114:23-28.
-
(2000)
Int J Legal Med
, vol.114
, pp. 23-28
-
-
Parson, W.1
Pegoraro, K.2
Niederstätter, H.3
-
47
-
-
0036188663
-
Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
-
Cuenoud P, Savolainen V, Chatrou LW et al. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Botany 2002;89:132-44.
-
(2002)
Am J Botany
, vol.89
, pp. 132-144
-
-
Cuenoud, P.1
Savolainen, V.2
Chatrou, L.W.3
-
48
-
-
0242573359
-
Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data
-
Levin RA, Wagner WL, Hoch PC et al. Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. Am J Botany 2003;90:107-15.
-
(2003)
Am J Botany
, vol.90
, pp. 107-115
-
-
Levin, R.A.1
Wagner, W.L.2
Hoch, P.C.3
-
49
-
-
77951631088
-
A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region
-
Kress WJ, Erickson DL, Shiu S. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One 2007;2: e508.
-
(2007)
PLoS One
, vol.2
-
-
Kress, W.J.1
Erickson, D.L.2
Shiu, S.3
-
50
-
-
50949125486
-
Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well
-
Fazekas AJ, Burgess KS, Kesanakurti PR et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One 2008;3:e2802.
-
(2008)
PLoS One
, vol.3
-
-
Fazekas, A.J.1
Burgess, K.S.2
Kesanakurti, P.R.3
-
51
-
-
33847371187
-
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
-
Taberlet P, Coissac E, Pompanon F et al. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucl Acids Res 2007;35:e14.
-
(2007)
Nucl Acids Res
, vol.35
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
-
52
-
-
77649108109
-
Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species
-
Chen S, Yao H, Han J et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 2010;5:e8613.
-
(2010)
PLoS One
, vol.5
-
-
Chen, S.1
Yao, H.2
Han, J.3
-
53
-
-
0031406079
-
Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
-
Sang T, Crawford DJ, Stuessy TF. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Botany 1997;84:1120-36.
-
(1997)
Am J Botany
, vol.84
, pp. 1120-1136
-
-
Sang, T.1
Crawford, D.J.2
Stuessy, T.F.3
-
54
-
-
0345393289
-
Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species
-
Tate JA, Simpson BB. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Syst Botany 2003;28:723-37.
-
(2003)
Syst Botany
, vol.28
, pp. 723-737
-
-
Tate, J.A.1
Simpson, B.B.2
-
55
-
-
84894562812
-
A molecular phylogeny and generic classification of Asphodelaceae subfamily Alooideae: a final resolution of the prickly issue of polyphyly in the alooids?
-
Manning J, Boatwright JS, Daru BH et al. A molecular phylogeny and generic classification of Asphodelaceae subfamily Alooideae: a final resolution of the prickly issue of polyphyly in the alooids? Syst Botany 2014;39:55-74.
-
(2014)
Syst Botany
, vol.39
, pp. 55-74
-
-
Manning, J.1
Boatwright, J.S.2
Daru, B.H.3
|