-
1
-
-
80053537984
-
RACK1, a multifaceted scaffolding protein: Structure and function
-
Adams DR, Ron D, Kiely PA. 2011. RACK1, a multifaceted scaffolding protein: structure and function. Cell Commun. Signal. 9:22
-
(2011)
Cell Commun. Signal.
, vol.9
, pp. 22
-
-
Adams, D.R.1
Ron, D.2
Kiely, P.A.3
-
2
-
-
84982685054
-
Quality control of nonstopmembrane proteins at the ER membrane and in the cytosol
-
Arakawa S, Yunoki K, Izawa T, Tamura Y,Nishikawa S, Endo T. 2016. Quality control of nonstopmembrane proteins at the ER membrane and in the cytosol. Sci. Rep. 2:30795
-
(2016)
Sci. Rep.
, vol.2
, pp. 30795
-
-
Arakawa, S.1
Yunoki, K.2
Izawa, T.3
Tamura, Y.4
Nishikawa, S.5
Endo, T.6
-
3
-
-
84956715035
-
Translational control by lysine-encoding A-rich sequences
-
Arthur L, Pavlovic-Djuranovic S, Smith-Koutmou K,Green R, Szczesny P,Djuranovic S. 2015. Translational control by lysine-encoding A-rich sequences. Sci. Adv. 1:e1500154
-
(2015)
Sci. Adv.
, vol.1
, pp. e1500154
-
-
Arthur, L.1
Pavlovic-Djuranovic, S.2
Smith-Koutmou, K.3
Green, R.4
Szczesny, P.5
Djuranovic, S.6
-
4
-
-
84913573216
-
Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation
-
Artieri CG, Fraser HB. 2014. Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation. Genome Res. 24:2011-21
-
(2014)
Genome Res.
, vol.24
, pp. 2011-2021
-
-
Artieri, C.G.1
Fraser, H.B.2
-
5
-
-
84950151285
-
Mapping the non-standardized biases of ribosome profiling
-
Bartholomaus A, Del Campo C, Ignatova Z. 2016. Mapping the non-standardized biases of ribosome profiling. Biol. Chem. 397:23-35
-
(2016)
Biol. Chem.
, vol.397
, pp. 23-35
-
-
Bartholomaus, A.1
Del Campo, C.2
Ignatova, Z.3
-
6
-
-
79958809003
-
Structure of the no-gomRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome
-
Becker T, Armache JP, Jarasch A, Anger AM, Villa E, et al. 2011. Structure of the no-gomRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. Nat. Struct. Mol. Biol. 18:715-20
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 715-720
-
-
Becker, T.1
Armache, J.P.2
Jarasch, A.3
Anger, A.M.4
Villa, E.5
-
7
-
-
77957169824
-
Role of a ribosome-associated E3 ubiquitin ligase in protein quality control
-
Bengtson MH, JoazeiroCA. 2010. Role of a ribosome-associated E3 ubiquitin ligase in protein quality control. Nature 467:470-73
-
(2010)
Nature
, vol.467
, pp. 470-473
-
-
Bengtson, M.H.1
Joazeiro, C.A.2
-
8
-
-
0022973332
-
Pulse-chase studies of the synthesis and intracellular transport of apolipoprotein B-100 in Hep G2 cells
-
Bostrom K, Wettesten M, Boren J, Bondjers G, Wiklund O, Olofsson SO. 1986. Pulse-chase studies of the synthesis and intracellular transport of apolipoprotein B-100 in Hep G2 cells. J. Biol. Chem. 261:13800-6
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 13800-13806
-
-
Bostrom, K.1
Wettesten, M.2
Boren, J.3
Bondjers, G.4
Wiklund, O.5
Olofsson, S.O.6
-
10
-
-
84871523350
-
A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress
-
Brandman O, Stewart-Ornstein J, Wong D, Larson A, Williams CC, et al. 2012. A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell 151:1042-54
-
(2012)
Cell
, vol.151
, pp. 1042-1054
-
-
Brandman, O.1
Stewart-Ornstein, J.2
Wong, D.3
Larson, A.4
Williams, C.C.5
-
11
-
-
85006340079
-
Beyond the triplet code: Context cues transform translation
-
Brar GA. 2016. Beyond the triplet code: Context cues transform translation. Cell 167:1681-92
-
(2016)
Cell
, vol.167
, pp. 1681-1692
-
-
Brar, G.A.1
-
12
-
-
34147207885
-
Identification of Rkr1, a nuclear RING domain protein with functional connections to chromatinmodification in Saccharomyces cerevisiae
-
BraunMA, Costa PJ, Crisucci EM, Arndt KM. 2007. Identification of Rkr1, a nuclear RING domain protein with functional connections to chromatinmodification in Saccharomyces cerevisiae. Mol. Cell. Biol. 27:2800-11
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 2800-2811
-
-
Braun, M.A.1
Costa, P.J.2
Crisucci, E.M.3
Arndt, K.M.4
-
13
-
-
0031740339
-
Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation
-
Brown CE, Sachs AB. 1998. Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation. Mol. Cell. Biol. 18:6548-59
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6548-6559
-
-
Brown, C.E.1
Sachs, A.B.2
-
14
-
-
84875465945
-
Positively charged residues are the major determinants of ribosomal velocity
-
Charneski CA, Hurst LD. 2013. Positively charged residues are the major determinants of ribosomal velocity. PLOS Biol. 11:e1001508
-
(2013)
PLOS Biol.
, vol.11
, pp. e1001508
-
-
Charneski, C.A.1
Hurst, L.D.2
-
15
-
-
77957801203
-
Structure of the Dom34-Hbs1 complex and implications for no-go decay
-
Chen L, Muhlrad D, Hauryliuk V, Cheng Z, Lim MK, et al. 2010. Structure of the Dom34-Hbs1 complex and implications for no-go decay. Nat. Struct. Mol. Biol. 17:1233-40
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1233-1240
-
-
Chen, L.1
Muhlrad, D.2
Hauryliuk, V.3
Cheng, Z.4
Lim, M.K.5
-
16
-
-
84907833130
-
Release factor eRF3 mediates premature translation termination on polylysine-stalled ribosomes in Saccharomyces cerevisiae
-
Chiabudini M, Tais A, Zhang Y, Hayashi S, Wolfle T, et al. 2014. Release factor eRF3 mediates premature translation termination on polylysine-stalled ribosomes in Saccharomyces cerevisiae.Mol. Cell. Biol. 34:4062-76
-
(2014)
Mol. Cell. Biol.
, vol.34
, pp. 4062-4076
-
-
Chiabudini, M.1
Tais, A.2
Zhang, Y.3
Hayashi, S.4
Wolfle, T.5
-
17
-
-
84960850555
-
Failure of RQC machinery causes protein aggregation and proteotoxic stress
-
Choe YJ, Park SH, Hassemer T, Korner R, Vincenz-Donnelly L, et al. 2016. Failure of RQC machinery causes protein aggregation and proteotoxic stress. Nature 531:191-95
-
(2016)
Nature
, vol.531
, pp. 191-195
-
-
Choe, Y.J.1
Park, S.H.2
Hassemer, T.3
Korner, R.4
Vincenz-Donnelly, L.5
-
18
-
-
60549094028
-
A mouse forward genetics screen identifies LISTERIN as an E3 ubiquitin ligase involved in neurodegeneration
-
Chu J, Hong NA, Masuda CA, Jenkins BV, Nelms KA, et al. 2009. A mouse forward genetics screen identifies LISTERIN as an E3 ubiquitin ligase involved in neurodegeneration. PNAS 106:2097-103
-
(2009)
PNAS
, vol.106
, pp. 2097-2103
-
-
Chu, J.1
Hong, N.A.2
Masuda, C.A.3
Jenkins, B.V.4
Nelms, K.A.5
-
19
-
-
84974688539
-
The Ccr4-Not complex is a key regulator of eukaryotic gene expression
-
Collart MA. 2016. The Ccr4-Not complex is a key regulator of eukaryotic gene expression. Wiley Interdiscip. Rev. RNA 7:438-54
-
(2016)
Wiley Interdiscip. Rev. RNA
, vol.7
, pp. 438-454
-
-
Collart, M.A.1
-
20
-
-
84897086751
-
False start: Cotranslational protein ubiquitination and cytosolic protein quality control
-
Comyn SA, Chan GT,Mayor T. 2014. False start: cotranslational protein ubiquitination and cytosolic protein quality control. J. Proteom. 100:92-101
-
(2014)
J. Proteom.
, vol.100
, pp. 92-101
-
-
Comyn, S.A.1
Chan, G.T.2
Mayor, T.3
-
21
-
-
84957806676
-
Rate control in yeast protein synthesis at the population and single-cell levels
-
Dacheux E, Firczuk H, McCarthy JE. 2015. Rate control in yeast protein synthesis at the population and single-cell levels. Biochem. Soc. Trans. 43:1266-70
-
(2015)
Biochem. Soc. Trans.
, vol.43
, pp. 1266-1270
-
-
Dacheux, E.1
Firczuk, H.2
McCarthy, J.E.3
-
22
-
-
84875481864
-
Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products
-
Defenouillère Q, Yao Y, Mouaikel J, Namane A, Galopier A, et al. 2013. Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products. PNAS 110:5046-51
-
(2013)
PNAS
, vol.110
, pp. 5046-5051
-
-
Defenouillère, Q.1
Yao, Y.2
Mouaikel, J.3
Namane, A.4
Galopier, A.5
-
23
-
-
84974624090
-
Rqc1 and Ltn1 prevent C-terminal alanine-threonine tail (CAT-tail)-induced protein aggregation by efficient recruitment of Cdc48 on stalled 60S subunits
-
DefenouillèreQ, Zhang E, Namane A, Mouaikel J, Jacquier A, Fromont-RacineM. 2016. Rqc1 and Ltn1 prevent C-terminal alanine-threonine tail (CAT-tail)-induced protein aggregation by efficient recruitment of Cdc48 on stalled 60S subunits. J. Biol. Chem. 291:12245-53
-
(2016)
J. Biol. Chem.
, vol.291
, pp. 12245-12253
-
-
Defenouillère, Q.1
Zhang, E.2
Namane, A.3
Mouaikel, J.4
Jacquier, A.5
Fromont-Racine, M.6
-
25
-
-
84863904349
-
The elongation, termination, and recycling phases of translation in eukaryotes
-
Dever TE, Green R. 2012. The elongation, termination, and recycling phases of translation in eukaryotes. Cold Spring Harb. Perspect. Biol. 4:a013706
-
(2012)
Cold Spring Harb. Perspect. Biol.
, vol.4
, pp. a013706
-
-
Dever, T.E.1
Green, R.2
-
26
-
-
84979895703
-
Mechanism and regulation of protein synthesis in Saccharomyces cerevisiae
-
Dever TE, Kinzy TG, Pavitt GD. 2016. Mechanism and regulation of protein synthesis in Saccharomyces cerevisiae. Genetics 203:65-107
-
(2016)
Genetics
, vol.203
, pp. 65-107
-
-
Dever, T.E.1
Kinzy, T.G.2
Pavitt, G.D.3
-
27
-
-
66849136862
-
Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome
-
Dimitrova LN, Kuroha K, Tatematsu T, Inada T. 2009. Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome. J. Biol. Chem. 284:10343-52
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 10343-10352
-
-
Dimitrova, L.N.1
Kuroha, K.2
Tatematsu, T.3
Inada, T.4
-
28
-
-
84978891279
-
Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits
-
Doamekpor SK, Lee JW, Hepowit NL, Wu C, Charenton C, et al. 2016. Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits. PNAS 113:E4151-60
-
(2016)
PNAS
, vol.113
, pp. E4151-E4160
-
-
Doamekpor, S.K.1
Lee, J.W.2
Hepowit, N.L.3
Wu, C.4
Charenton, C.5
-
29
-
-
84871921644
-
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
-
Doerfel LK, Wohlgemuth I, Kothe C, Peske F, Urlaub H, Rodnina MV. 2013. EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339:85-88
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
30
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma MK, Parker R. 2006. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440:561-64
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
31
-
-
84883210213
-
Principles of cotranslational ubiquitination and quality control at the ribosome
-
Duttler S, Pechmann S, Frydman J. 2013. Principles of cotranslational ubiquitination and quality control at the ribosome. Mol. Cell 50:379-93
-
(2013)
Mol. Cell
, vol.50
, pp. 379-393
-
-
Duttler, S.1
Pechmann, S.2
Frydman, J.3
-
32
-
-
84901006738
-
Polymerase stalling during replication, transcription and translation
-
Edenberg ER, DowneyM, Toczyski D. 2014. Polymerase stalling during replication, transcription and translation. Curr. Biol. 24:R445-52
-
(2014)
Curr. Biol.
, vol.24
, pp. R445-R452
-
-
Edenberg, E.R.1
Downey, M.2
Toczyski, D.3
-
33
-
-
1642570293
-
A nascent polypeptide domain that can regulate translation elongation
-
Fang P, Spevak CC, Wu C, Sachs MS. 2004. A nascent polypeptide domain that can regulate translation elongation. PNAS 101:4059-64
-
(2004)
PNAS
, vol.101
, pp. 4059-4064
-
-
Fang, P.1
Spevak, C.C.2
Wu, C.3
Sachs, M.S.4
-
34
-
-
84863723691
-
Selective destruction of abnormal proteins by ubiquitin-mediated protein quality control degradation
-
Fredrickson EK, Gardner RG. 2012. Selective destruction of abnormal proteins by ubiquitin-mediated protein quality control degradation. Semin. Cell Dev. Biol. 23:530-37
-
(2012)
Semin. Cell Dev. Biol.
, vol.23
, pp. 530-537
-
-
Fredrickson, E.K.1
Gardner, R.G.2
-
35
-
-
0037155592
-
An mRNA surveillance mechanism that eliminates transcripts lacking termination codons
-
Frischmeyer PA, van Hoof A, O'Donnell K, Guerrerio AL, Parker R, DietzHC. 2002. An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science 295:2258-61
-
(2002)
Science
, vol.295
, pp. 2258-2261
-
-
Frischmeyer, P.A.1
Van Hoof, A.2
O'Donnell, K.3
Guerrerio, A.L.4
Parker, R.5
Dietz, H.C.6
-
36
-
-
84858309380
-
Structural basis for the rescue of stalled ribosomes: Structure of YaeJ bound to the ribosome
-
Gagnon MG, Seetharaman SV, BulkleyD, SteitzTA. 2012. Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science 335:1370-72
-
(2012)
Science
, vol.335
, pp. 1370-1372
-
-
Gagnon, M.G.1
Seetharaman, S.V.2
Bulkley, D.3
Steitz, T.A.4
-
37
-
-
84987860255
-
Working hard at the nexus between cell signaling and the ribosomal machinery: An insight into the roles of RACK1 in translational regulation
-
Gallo S, Manfrini N. 2015. Working hard at the nexus between cell signaling and the ribosomal machinery: an insight into the roles of RACK1 in translational regulation. Translation 3:e1120382
-
(2015)
Translation
, vol.3
, pp. e1120382
-
-
Gallo, S.1
Manfrini, N.2
-
38
-
-
84978492609
-
Adjacent codons act in concert to modulate translation efficiency in yeast
-
Gamble CE, Brule CE, Dean KM, Fields S, Grayhack EJ. 2016. Adjacent codons act in concert to modulate translation efficiency in yeast. Cell 166:679-90
-
(2016)
Cell
, vol.166
, pp. 679-690
-
-
Gamble, C.E.1
Brule, C.E.2
Dean, K.M.3
Fields, S.4
Grayhack, E.J.5
-
39
-
-
85013377392
-
Protein quality control at the ribosome: Focus on RAC,NAC and RQC
-
GamerdingerM. 2016. Protein quality control at the ribosome: focus on RAC,NAC and RQC. Essays Biochem. 60:203-12
-
(2016)
Essays Biochem.
, vol.60
, pp. 203-212
-
-
Gamerdinger, M.1
-
40
-
-
84964314754
-
Measurement of average decoding rates of the 61 sense codons in vivo
-
Gardin J, Yeasmin R, Yurovsky A, Cai Y, Skiena S, Futcher B. 2014. Measurement of average decoding rates of the 61 sense codons in vivo. eLife 3:e03735
-
(2014)
ELife
, vol.3
, pp. e03735
-
-
Gardin, J.1
Yeasmin, R.2
Yurovsky, A.3
Cai, Y.4
Skiena, S.5
Futcher, B.6
-
41
-
-
84964315924
-
Translation inhibitors cause abnormalities in ribosome profiling experiments
-
Gerashchenko MV, Gladyshev VN. 2014. Translation inhibitors cause abnormalities in ribosome profiling experiments. Nucleic Acids Res. 42:e134
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e134
-
-
Gerashchenko, M.V.1
Gladyshev, V.N.2
-
42
-
-
4444351205
-
Yeast Asc1p andmammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression
-
Gerbasi VR, Weaver CM,Hill S, Friedman DB, Link AJ. 2004. Yeast Asc1p andmammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression. Mol. Cell. Biol. 24:8276-87
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 8276-8287
-
-
Gerbasi, V.R.1
Weaver, C.M.2
Hill, S.3
Friedman, D.B.4
Link, A.J.5
-
43
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S,HuhWK,Bower K, HowsonRW,Belle A, et al. 2003. Global analysis of protein expression in yeast. Nature 425:737-41
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
-
45
-
-
84867847719
-
Surveillance pathways rescuing eukaryotic ribosomes lost in translation
-
Graille M, Seraphin B. 2012. Surveillance pathways rescuing eukaryotic ribosomes lost in translation. Nat. Rev. Mol. Cell Biol. 13:727-35
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 727-735
-
-
Graille, M.1
Seraphin, B.2
-
46
-
-
84891707361
-
EIF5A promotes translation of polyproline motifs
-
Gutierrez E, Shin BS, Woolstenhulme CJ, Kim JR, Saini P, et al. 2013. eIF5A promotes translation of polyproline motifs. Mol. Cell 51:35-45
-
(2013)
Mol. Cell
, vol.51
, pp. 35-45
-
-
Gutierrez, E.1
Shin, B.S.2
Woolstenhulme, C.J.3
Kim, J.R.4
Saini, P.5
-
47
-
-
84896863244
-
Dom34 rescues ribosomes in 3 untranslated regions
-
Guydosh NR, Green R. 2014. Dom34 rescues ribosomes in 3 untranslated regions. Cell 156:950-62
-
(2014)
Cell
, vol.156
, pp. 950-962
-
-
Guydosh, N.R.1
Green, R.2
-
48
-
-
85018350325
-
Translation of poly(A) tails leads to precise mRNA cleavage
-
Guydosh NR, Green R. 2017. Translation of poly(A) tails leads to precise mRNA cleavage. RNA 23:749-61
-
(2017)
RNA
, vol.23
, pp. 749-761
-
-
Guydosh, N.R.1
Green, R.2
-
49
-
-
1542319100
-
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
-
Halic M, Becker T, Pool MR, Spahn CM, Grassucci RA, et al. 2004. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. Nature 427:808-14
-
(2004)
Nature
, vol.427
, pp. 808-814
-
-
Halic, M.1
Becker, T.2
Pool, M.R.3
Spahn, C.M.4
Grassucci, R.A.5
-
50
-
-
84898429935
-
The Not4 E3 ligase and Caf1/Ccr4 deadenylase play distinct roles in protein quality control
-
Halter D, Collart MA, Panasenko OO. 2014. The Not4 E3 ligase and Caf1/Ccr4 deadenylase play distinct roles in protein quality control. PLOS ONE 9:e86218
-
(2014)
PLOS ONE
, vol.9
, pp. e86218
-
-
Halter, D.1
Collart, M.A.2
Panasenko, O.O.3
-
51
-
-
84988336041
-
Proteome complexity and the forces that drive proteome imbalance
-
Harper JW, Bennett EJ. 2016. Proteome complexity and the forces that drive proteome imbalance. Nature 537:328-38
-
(2016)
Nature
, vol.537
, pp. 328-338
-
-
Harper, J.W.1
Bennett, E.J.2
-
52
-
-
84934448890
-
The unfolded protein response triggers site-specific regulatory ubiquitylation of 40S ribosomal proteins
-
Higgins R, Gendron JM, Rising L, Mak R, Webb K, et al. 2015. The unfolded protein response triggers site-specific regulatory ubiquitylation of 40S ribosomal proteins. Mol. Cell 59:35-49
-
(2015)
Mol. Cell
, vol.59
, pp. 35-49
-
-
Higgins, R.1
Gendron, J.M.2
Rising, L.3
Mak, R.4
Webb, K.5
-
53
-
-
84924785951
-
Ribosome rescue and protein quality control in concert
-
Hilal T, Spahn CM. 2015. Ribosome rescue and protein quality control in concert. Mol. Cell 57:389-90
-
(2015)
Mol. Cell
, vol.57
, pp. 389-390
-
-
Hilal, T.1
Spahn, C.M.2
-
54
-
-
85006765705
-
Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution
-
Hilal T, Yamamoto H, Loerke J, Burger J, Mielke T, Spahn CM. 2016. Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution. Nat. Commun. 7:13521
-
(2016)
Nat. Commun.
, vol.7
, pp. 13521
-
-
Hilal, T.1
Yamamoto, H.2
Loerke, J.3
Burger, J.4
Mielke, T.5
Spahn, C.M.6
-
55
-
-
84953284492
-
Understanding biases in ribosome profiling experiments reveals signatures of translation dynamics in yeast
-
Hussmann JA, Patchett S, Johnson A, Sawyer S, PressWH. 2015. Understanding biases in ribosome profiling experiments reveals signatures of translation dynamics in yeast. PLOS Genet. 11:e1005732
-
(2015)
PLOS Genet.
, vol.11
, pp. e1005732
-
-
Hussmann, J.A.1
Patchett, S.2
Johnson, A.3
Sawyer, S.4
Press, W.H.5
-
56
-
-
85016165429
-
Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons
-
Huter P,Muller C, Beckert B, Arenz S, Berninghausen O, et al. 2017. Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons. Nature 541:546-49
-
(2017)
Nature
, vol.541
, pp. 546-549
-
-
Huter, P.1
Muller, C.2
Beckert, B.3
Arenz, S.4
Berninghausen, O.5
-
57
-
-
84975451929
-
Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3 end of nonstop mRNA
-
IkeuchiK, Inada T. 2016. Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3 end of nonstop mRNA. Sci. Rep. 6:28234
-
(2016)
Sci. Rep.
, vol.6
, pp. 28234
-
-
Ikeuchi, K.1
Inada, T.2
-
58
-
-
85006508412
-
The ribosome as a platform formRNAand nascent polypeptide quality control
-
InadaT. 2017. The ribosome as a platform formRNAand nascent polypeptide quality control. Trends Biochem. Sci. 42:5-15
-
(2017)
Trends Biochem. Sci.
, vol.42
, pp. 5-15
-
-
Inada, T.1
-
59
-
-
84961837688
-
Ribosome footprint profiling of translation throughout the genome
-
Ingolia NT. 2016. Ribosome footprint profiling of translation throughout the genome. Cell 165:22-33
-
(2016)
Cell
, vol.165
, pp. 22-33
-
-
Ingolia, N.T.1
-
60
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia NT, Lareau LF, Weissman JS. 2011. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147:789-802
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
61
-
-
84904806049
-
Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration
-
Ishimura R, Nagy G, Dotu I, Zhou H, Yang XL, et al. 2014. Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration. Science 345:455-59
-
(2014)
Science
, vol.345
, pp. 455-459
-
-
Ishimura, R.1
Nagy, G.2
Dotu, I.3
Zhou, H.4
Yang, X.L.5
-
62
-
-
34547623918
-
Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function
-
Isken O, Maquat LE. 2007. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev. 21:1833-56
-
(2007)
Genes Dev.
, vol.21
, pp. 1833-1856
-
-
Isken, O.1
Maquat, L.E.2
-
63
-
-
84878912996
-
Arrest peptides: Cis-acting modulators of translation
-
Ito K, Chiba S. 2013. Arrest peptides: cis-acting modulators of translation. Annu. Rev. Biochem. 82:171-202
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 171-202
-
-
Ito, K.1
Chiba, S.2
-
64
-
-
33947159090
-
Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast
-
Ito-Harashima S, Kuroha K, Tatematsu T, Inada T. 2007. Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast. Genes Dev. 21:519-24
-
(2007)
Genes Dev.
, vol.21
, pp. 519-524
-
-
Ito-Harashima, S.1
Kuroha, K.2
Tatematsu, T.3
Inada, T.4
-
65
-
-
84866931539
-
Roles of dom34:hbs1 in nonstop protein clearance from translocators for normal organelle protein influx
-
Izawa T, Tsuboi T, Kuroha K, Inada T,Nishikawa S, Endo T. 2012. Roles of dom34:hbs1 in nonstop protein clearance from translocators for normal organelle protein influx. Cell Rep. 2:447-53
-
(2012)
Cell Rep.
, vol.2
, pp. 447-453
-
-
Izawa, T.1
Tsuboi, T.2
Kuroha, K.3
Inada, T.4
Nishikawa, S.5
Endo, T.6
-
66
-
-
85008439822
-
Initiation of quality control during poly(A) translation requires site-specific ribosome ubiquitination
-
Juszkiewicz S, Hegde RS. 2017. Initiation of quality control during poly(A) translation requires site-specific ribosome ubiquitination. Mol. Cell 65:743-50
-
(2017)
Mol. Cell
, vol.65
, pp. 743-750
-
-
Juszkiewicz, S.1
Hegde, R.S.2
-
67
-
-
84928433497
-
Mechanisms of ribosome rescue in bacteria
-
Keiler KC. 2015. Mechanisms of ribosome rescue in bacteria. Nat. Rev. Microbiol. 13:285-97
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 285-297
-
-
Keiler, K.C.1
-
68
-
-
0038121152
-
Signal recognition particle-dependent protein targeting, universal to all kingdoms of life
-
Koch HG, Moser M, Muller M. 2003. Signal recognition particle-dependent protein targeting, universal to all kingdoms of life. Rev. Physiol. Biochem. Pharmacol. 146:55-94
-
(2003)
Rev. Physiol. Biochem. Pharmacol.
, vol.146
, pp. 55-94
-
-
Koch, H.G.1
Moser, M.2
Muller, M.3
-
69
-
-
78649472341
-
Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest
-
Kuroha K, Akamatsu M, Dimitrova L, Ito T, Kato Y, et al. 2010. Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest. EMBO Rep. 11:956-61
-
(2010)
EMBO Rep.
, vol.11
, pp. 956-961
-
-
Kuroha, K.1
Akamatsu, M.2
Dimitrova, L.3
Ito, T.4
Kato, Y.5
-
70
-
-
84900489620
-
Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
-
Lareau LF,HiteDH, Hogan GJ, Brown PO. 2014. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments. eLife 3:e01257
-
(2014)
ELife
, vol.3
, pp. e01257
-
-
Lareau, L.F.1
Hite, D.H.2
Hogan, G.J.3
Brown, P.O.4
-
71
-
-
84883142045
-
Translation of CGA codon repeats in yeast involves quality control components and ribosomal protein L1
-
Letzring DP, Wolf AS, Brule CE, Grayhack EJ. 2013. Translation of CGA codon repeats in yeast involves quality control components and ribosomal protein L1. RNA 19:1208-17
-
(2013)
RNA
, vol.19
, pp. 1208-1217
-
-
Letzring, D.P.1
Wolf, A.S.2
Brule, C.E.3
Grayhack, E.J.4
-
72
-
-
84930510366
-
RACK1, a versatile hub in cancer
-
Li JJ, Xie D. 2015. RACK1, a versatile hub in cancer. Oncogene 34:1890-98
-
(2015)
Oncogene
, vol.34
, pp. 1890-1898
-
-
Li, J.J.1
Xie, D.2
-
73
-
-
84873467908
-
Cotranslational response to proteotoxic stress by elongation pausing of ribosomes
-
Liu B, Han Y, Qian SB. 2013. Cotranslational response to proteotoxic stress by elongation pausing of ribosomes. Mol. Cell 49:453-63
-
(2013)
Mol. Cell
, vol.49
, pp. 453-463
-
-
Liu, B.1
Han, Y.2
Qian, S.B.3
-
74
-
-
54249096045
-
Electrostatics in the ribosomal tunnel modulate chain elongation rates
-
Lu J, Deutsch C. 2008. Electrostatics in the ribosomal tunnel modulate chain elongation rates. J. Mol. Biol. 384:73-86
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 73-86
-
-
Lu, J.1
Deutsch, C.2
-
75
-
-
84894085209
-
Protecting the proteome: Eukaryotic cotranslational quality control pathways
-
Lykke-Andersen J, Bennett EJ. 2014. Protecting the proteome: eukaryotic cotranslational quality control pathways. J. Cell Biol. 204:467-76
-
(2014)
J. Cell Biol.
, vol.204
, pp. 467-476
-
-
Lykke-Andersen, J.1
Bennett, E.J.2
-
76
-
-
84909606327
-
Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex
-
Lyumkis D, Oliveira dos Passos D, Tahara EB, Webb K, Bennett EJ, et al. 2014. Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex. PNAS 111:15981-86
-
(2014)
PNAS
, vol.111
, pp. 15981-15986
-
-
Lyumkis, D.1
Oliveira dos Passos, D.2
Tahara, E.B.3
Webb, K.4
Bennett, E.J.5
-
77
-
-
85016158732
-
Mechanistic insights into the alternative translation termination by ArfA and RF2
-
Ma C, Kurita D, Li N, Chen Y, Himeno H, GaoN. 2017. Mechanistic insights into the alternative translation termination by ArfA and RF2. Nature 541:550-53
-
(2017)
Nature
, vol.541
, pp. 550-553
-
-
Ma, C.1
Kurita, D.2
Li, N.3
Chen, Y.4
Himeno, H.5
Gao, N.6
-
78
-
-
84930615388
-
Ribosome A and P sites revealed by length analysis of ribosome profiling data
-
Martens AT, Taylor J, Hilser VJ. 2015. Ribosome A and P sites revealed by length analysis of ribosome profiling data. Nucleic Acids Res. 43:3680-87
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 3680-3687
-
-
Martens, A.T.1
Taylor, J.2
Hilser, V.J.3
-
79
-
-
84891145553
-
Protein quality control systems associated with no-go and nonstop mRNA surveillance in yeast
-
Matsuda R, Ikeuchi K, Nomura S, Inada T. 2014. Protein quality control systems associated with no-go and nonstop mRNA surveillance in yeast. Genes Cells 19:1-12
-
(2014)
Genes Cells
, vol.19
, pp. 1-12
-
-
Matsuda, R.1
Ikeuchi, K.2
Nomura, S.3
Inada, T.4
-
80
-
-
33745587550
-
Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay
-
Meaux S, Van Hoof A. 2006. Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay. RNA 12:1323-37
-
(2006)
RNA
, vol.12
, pp. 1323-1337
-
-
Meaux, S.1
Van Hoof, A.2
-
81
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
Moore SD, Sauer RT. 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76:101-24
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
82
-
-
0025310854
-
MRNA poly(A) tail, a 3 enhancer of translational initiation
-
Munroe D, Jacobson A. 1990. mRNA poly(A) tail, a 3 enhancer of translational initiation. Mol. Cell. Biol. 10:3441-55
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 3441-3455
-
-
Munroe, D.1
Jacobson, A.2
-
83
-
-
37549003962
-
Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin
-
Muto H, Ito K. 2008. Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin. Biochem. Biophys. Res. Commun. 366:1043-47
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.366
, pp. 1043-1047
-
-
Muto, H.1
Ito, K.2
-
84
-
-
84931576485
-
Optimization of codon translation rates via tRNA modifications maintains proteome integrity
-
Nedialkova DD, Leidel SA. 2015. Optimization of codon translation rates via tRNA modifications maintains proteome integrity. Cell 161:1606-18
-
(2015)
Cell
, vol.161
, pp. 1606-1618
-
-
Nedialkova, D.D.1
Leidel, S.A.2
-
85
-
-
84858321922
-
Decoding in the absence of a codon by tmRNA and SmpB in the ribosome
-
Neubauer C, Gillet R, Kelley AC, Ramakrishnan V. 2012. Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. Science 335:1366-69
-
(2012)
Science
, vol.335
, pp. 1366-1369
-
-
Neubauer, C.1
Gillet, R.2
Kelley, A.C.3
Ramakrishnan, V.4
-
86
-
-
78649910014
-
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
-
Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, et al. 2010. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell 143:1018-29
-
(2010)
Cell
, vol.143
, pp. 1018-1029
-
-
Ozsolak, F.1
Kapranov, P.2
Foissac, S.3
Kim, S.W.4
Fishilevich, E.5
-
87
-
-
58549114677
-
Slow peptide bond formation by proline and other N-alkylamino acids in translation
-
Pavlov MY,Watts RE, Tan Z, Cornish VW, Ehrenberg M, Forster AC. 2009. Slow peptide bond formation by proline and other N-alkylamino acids in translation. PNAS 106:50-54
-
(2009)
PNAS
, vol.106
, pp. 50-54
-
-
Pavlov, M.Y.1
Watts, R.E.2
Tan, Z.3
Cornish, V.W.4
Ehrenberg, M.5
Forster, A.C.6
-
88
-
-
84930682682
-
Widespread co-translational RNA decay reveals ribosome dynamics
-
Pelechano V, Wei W, Steinmetz LM. 2015. Widespread co-translational RNA decay reveals ribosome dynamics. Cell 161:1400-12
-
(2015)
Cell
, vol.161
, pp. 1400-1412
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
89
-
-
79955626576
-
Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes
-
Pisareva VP, Skabkin MA, Hellen CU, Pestova TV, Pisarev AV. 2011. Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes. EMBO J. 30:1804-17
-
(2011)
EMBO J.
, vol.30
, pp. 1804-1817
-
-
Pisareva, V.P.1
Skabkin, M.A.2
Hellen, C.U.3
Pestova, T.V.4
Pisarev, A.V.5
-
90
-
-
84921690520
-
Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
-
Pop C, Rouskin S, Ingolia NT, Han L, Phizicky EM, et al. 2014. Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation. Mol. Syst. Biol. 10:770
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 770
-
-
Pop, C.1
Rouskin, S.2
Ingolia, N.T.3
Han, L.4
Phizicky, E.M.5
-
91
-
-
84904434651
-
Cryoelectron microscopic structures of eukaryotic translation termination complexes containing eRF1-eRF3 or eRF1-ABCE1
-
Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler DE, et al. 2014. Cryoelectron microscopic structures of eukaryotic translation termination complexes containing eRF1-eRF3 or eRF1-ABCE1. Cell Rep. 8:59-65
-
(2014)
Cell Rep.
, vol.8
, pp. 59-65
-
-
Preis, A.1
Heuer, A.2
Barrio-Garcia, C.3
Hauser, A.4
Eyler, D.E.5
-
92
-
-
84862848780
-
Ribosome-associated chaperones as key players in proteostasis
-
Preissler S, Deuerling E. 2012. Ribosome-associated chaperones as key players in proteostasis. Trends Biochem. Sci. 37:274-83
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 274-283
-
-
Preissler, S.1
Deuerling, E.2
-
93
-
-
84948573230
-
Not4-dependent translational repression is important for cellular protein homeostasis in yeast
-
Preissler S, Reuther J, Koch M, Scior A, Bruderek M, et al. 2015. Not4-dependent translational repression is important for cellular protein homeostasis in yeast. EMBO J. 34:1905-24
-
(2015)
EMBO J.
, vol.34
, pp. 1905-1924
-
-
Preissler, S.1
Reuther, J.2
Koch, M.3
Scior, A.4
Bruderek, M.5
-
94
-
-
84966708267
-
Increased ribosome density associated to positively charged residues is evident in ribosome profiling experiments performed in the absence of translation inhibitors
-
Requiao RD, de SouzaHJ, Rossetto S, Domitrovic T, Palhano FL. 2016. Increased ribosome density associated to positively charged residues is evident in ribosome profiling experiments performed in the absence of translation inhibitors. RNA Biol. 13:561-68
-
(2016)
RNA Biol.
, vol.13
, pp. 561-568
-
-
Requiao, R.D.1
De Souza, H.J.2
Rossetto, S.3
Domitrovic, T.4
Palhano, F.L.5
-
95
-
-
84943742690
-
Pausing on polyribosomes: Make way for elongation in translational control
-
Richter JD, Coller J. 2015. Pausing on polyribosomes: Make way for elongation in translational control. Cell 163:292-300
-
(2015)
Cell
, vol.163
, pp. 292-300
-
-
Richter, J.D.1
Coller, J.2
-
96
-
-
84944720958
-
A comparative genomics study on the effect of individual amino acids on ribosome stalling
-
Sabi R, Tuller T. 2015. A comparative genomics study on the effect of individual amino acids on ribosome stalling. BMC Genom. 16(Suppl. 10):5
-
(2015)
BMC Genom.
, vol.16
, pp. 5
-
-
Sabi, R.1
Tuller, T.2
-
97
-
-
84930350616
-
Inhibiting K63 polyubiquitination abolishes no-go type stalled translation surveillance in Saccharomyces cerevisiae
-
Saito K, HorikawaW, Ito K. 2015. Inhibiting K63 polyubiquitination abolishes no-go type stalled translation surveillance in Saccharomyces cerevisiae. PLOS Genet. 11:e1005197
-
(2015)
PLOS Genet.
, vol.11
, pp. e1005197
-
-
Saito, K.1
Horikawa, W.2
Ito, K.3
-
98
-
-
84879035056
-
TheHbs1-Dom34 protein complex functions in non-stopmRNA decay in mammalian cells
-
Saito S,Hosoda N, Hoshino S. 2013. TheHbs1-Dom34 protein complex functions in non-stopmRNA decay in mammalian cells. J. Biol. Chem. 288:17832-43
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 17832-17843
-
-
Saito, S.1
Hosoda, N.2
Hoshino, S.3
-
99
-
-
85006265895
-
The cryo-EM structure of a ribosome-Ski2-Ski3-Ski8 helicase complex
-
Schmidt C, Kowalinski E, Shanmuganathan V, Defenouillère Q, Braunger K, et al. 2016. The cryo-EM structure of a ribosome-Ski2-Ski3-Ski8 helicase complex. Science 354:1431-33
-
(2016)
Science
, vol.354
, pp. 1431-1433
-
-
Schmidt, C.1
Kowalinski, E.2
Shanmuganathan, V.3
Defenouillère, Q.4
Braunger, K.5
-
100
-
-
0034643336
-
Rapid degradation of a large fraction of newly synthesized proteins by proteasomes
-
Schubert U, Anton LC, Gibbs J, Norbury CC, Yewdell JW, Bennink JR. 2000. Rapid degradation of a large fraction of newly synthesized proteins by proteasomes. Nature 404:770-74
-
(2000)
Nature
, vol.404
, pp. 770-774
-
-
Schubert, U.1
Anton, L.C.2
Gibbs, J.3
Norbury, C.C.4
Yewdell, J.W.5
Bennink, J.R.6
-
101
-
-
84873442839
-
Widespread regulation of translation by elongation pausing in heat shock
-
Shalgi R,Hurt JA, Krykbaeva I, Taipale M, Lindquist S, BurgeCB. 2013. Widespread regulation of translation by elongation pausing in heat shock. Mol. Cell 49:439-52
-
(2013)
Mol. Cell
, vol.49
, pp. 439-452
-
-
Shalgi, R.1
Hurt, J.A.2
Krykbaeva, I.3
Taipale, M.4
Lindquist, S.5
BurgeC, B.6
-
102
-
-
84924777167
-
Structure and assembly pathway of the ribosome quality control complex
-
Shao S, Brown A, Santhanam B, Hegde RS. 2015. Structure and assembly pathway of the ribosome quality control complex. Mol. Cell 57:433-44
-
(2015)
Mol. Cell
, vol.57
, pp. 433-444
-
-
Shao, S.1
Brown, A.2
Santhanam, B.3
Hegde, R.S.4
-
103
-
-
84908047269
-
Reconstitution of a minimal ribosome-associated ubiquitination pathway with purified factors
-
Shao S, Hegde RS. 2014. Reconstitution of a minimal ribosome-associated ubiquitination pathway with purified factors. Mol. Cell 55:880-90
-
(2014)
Mol. Cell
, vol.55
, pp. 880-890
-
-
Shao, S.1
Hegde, R.S.2
-
104
-
-
84959156601
-
Target selection during protein quality control
-
Shao S, Hegde RS. 2016. Target selection during protein quality control. Trends Biochem. Sci. 41:124-37
-
(2016)
Trends Biochem. Sci.
, vol.41
, pp. 124-137
-
-
Shao, S.1
Hegde, R.S.2
-
105
-
-
84878857004
-
Listerin-dependent nascent protein ubiquitination relies on ribosome subunit dissociation
-
Shao S, von der Malsburg K, Hegde RS. 2013. Listerin-dependent nascent protein ubiquitination relies on ribosome subunit dissociation. Mol. Cell 50:637-48
-
(2013)
Mol. Cell
, vol.50
, pp. 637-648
-
-
Shao, S.1
Von Der Malsburg, K.2
Hegde, R.S.3
-
106
-
-
84984910838
-
Distinct types of translation termination generate substrates for ribosome-associated quality control
-
Shcherbik N, Chernova TA, Chernoff YO, Pestov DG. 2016. Distinct types of translation termination generate substrates for ribosome-associated quality control. Nucleic Acids Res. 44:6840-52
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 6840-6852
-
-
Shcherbik, N.1
Chernova, T.A.2
Chernoff, Y.O.3
Pestov, D.G.4
-
107
-
-
84922479672
-
Rqc2p and 60S ribosomal subunits mediate mRNAindependent elongation of nascent chains
-
Shen PS, Park J, Qin Y, Li X, Parsawar K, et al. 2015. Rqc2p and 60S ribosomal subunits mediate mRNAindependent elongation of nascent chains. Science 347:75-78
-
(2015)
Science
, vol.347
, pp. 75-78
-
-
Shen, P.S.1
Park, J.2
Qin, Y.3
Li, X.4
Parsawar, K.5
-
108
-
-
77957935294
-
Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay
-
Shoemaker CJ, Eyler DE, Green R. 2010. Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay. Science 330:369-72
-
(2010)
Science
, vol.330
, pp. 369-372
-
-
Shoemaker, C.J.1
Eyler, D.E.2
Green, R.3
-
109
-
-
84855501083
-
Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast
-
Shoemaker CJ, Green R. 2011. Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast. PNAS 108:E1392-98
-
(2011)
PNAS
, vol.108
, pp. E1392-E1398
-
-
Shoemaker, C.J.1
Green, R.2
-
111
-
-
84966372456
-
Quality control of chemically damaged RNA
-
Simms CL, Zaher HS. 2016. Quality control of chemically damaged RNA. Cell. Mol. Life Sci. 73:3639-53
-
(2016)
Cell. Mol. Life Sci.
, vol.73
, pp. 3639-3653
-
-
Simms, C.L.1
Zaher, H.S.2
-
112
-
-
85018285786
-
Asc1, Hel2, and Slh1 couple translation arrest to nascent chain degradation
-
Sitron CS, Park JH, Brandman O. 2017. Asc1, Hel2, and Slh1 couple translation arrest to nascent chain degradation. RNA 23:798-810
-
(2017)
RNA
, vol.23
, pp. 798-810
-
-
Sitron, C.S.1
Park, J.H.2
Brandman, O.3
-
114
-
-
85010910635
-
ZNF598 and RACK1 regulate mammalian ribosome-associated quality control function by mediating regulatory 40S ribosomal ubiquitylation
-
Sundaramoorthy E, Leonard M, Mak R, Liao J, Fulzele A, Bennett EJ. 2017. ZNF598 and RACK1 regulate mammalian ribosome-associated quality control function by mediating regulatory 40S ribosomal ubiquitylation. Mol. Cell 65:751-60.e4
-
(2017)
Mol. Cell
, vol.65
, pp. 751e4-760e4
-
-
Sundaramoorthy, E.1
Leonard, M.2
Mak, R.3
Liao, J.4
Fulzele, A.5
Bennett, E.J.6
-
115
-
-
84868598068
-
Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex
-
Taylor D, Unbehaun A, Li W, Das S, Lei J, et al. 2012. Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex. PNAS 109:18413-18
-
(2012)
PNAS
, vol.109
, pp. 18413-18418
-
-
Taylor, D.1
Unbehaun, A.2
Li, W.3
Das, S.4
Lei, J.5
-
116
-
-
84861456756
-
Dom34:hbs1 plays a general role in qualitycontrol systems by dissociation of a stalled ribosome at the 3 end of aberrantmRNA
-
Tsuboi T, Kuroha K, Kudo K, Makino S, Inoue E, et al. 2012. Dom34:hbs1 plays a general role in qualitycontrol systems by dissociation of a stalled ribosome at the 3 end of aberrantmRNA. Mol. Cell 46:518-29
-
(2012)
Mol. Cell
, vol.46
, pp. 518-529
-
-
Tsuboi, T.1
Kuroha, K.2
Kudo, K.3
Makino, S.4
Inoue, E.5
-
117
-
-
0037155584
-
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
-
van Hoof A, Frischmeyer PA, Dietz HC, Parker R. 2002. Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science 295:2262-64
-
(2002)
Science
, vol.295
, pp. 2262-2264
-
-
Van Hoof, A.1
Frischmeyer, P.A.2
Dietz, H.C.3
Parker, R.4
-
118
-
-
84879034688
-
Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosome
-
Verma R, Oania RS, Kolawa NJ, Deshaies RJ. 2013. Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosome. eLife 2:e00308
-
(2013)
ELife
, vol.2
, pp. e00308
-
-
Verma, R.1
Oania, R.S.2
Kolawa, N.J.3
Deshaies, R.J.4
-
119
-
-
84878924244
-
Structural basis of the translational elongation cycle
-
Voorhees RM, Ramakrishnan V. 2013. Structural basis of the translational elongation cycle. Annu. Rev. Biochem. 82:203-36
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 203-236
-
-
Voorhees, R.M.1
Ramakrishnan, V.2
-
120
-
-
84930384193
-
Ubiquitination of newly synthesized proteins at the ribosome
-
Wang F, Canadeo LA, Huibregtse JM. 2015. Ubiquitination of newly synthesized proteins at the ribosome. Biochimie 114:127-33
-
(2015)
Biochimie
, vol.114
, pp. 127-133
-
-
Wang, F.1
Canadeo, L.A.2
Huibregtse, J.M.3
-
121
-
-
84864011870
-
The arginine attenuator peptide interferes with the ribosome peptidyl transferase center
-
Wei J,Wu C, Sachs MS. 2012. The arginine attenuator peptide interferes with the ribosome peptidyl transferase center. Mol. Cell. Biol. 32:2396-406
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 2396-2406
-
-
Wei, J.1
Wu, C.2
Sachs, M.S.3
-
122
-
-
84959149884
-
Improved ribosomefootprint and mRNA measurements provide insights into dynamics and regulation of yeast translation
-
Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP. 2016. Improved ribosomefootprint and mRNA measurements provide insights into dynamics and regulation of yeast translation. Cell Rep. 14:1787-99
-
(2016)
Cell Rep.
, vol.14
, pp. 1787-1799
-
-
Weinberg, D.E.1
Shah, P.2
Eichhorn, S.W.3
Hussmann, J.A.4
Plotkin, J.B.5
Bartel, D.P.6
-
123
-
-
84957548841
-
Translation regulation via nascent polypeptide-mediated ribosome stalling
-
Wilson DN, Arenz S, Beckmann R. 2016. Translation regulation via nascent polypeptide-mediated ribosome stalling. Curr. Opin. Struct. Biol. 37:123-33
-
(2016)
Curr. Opin. Struct. Biol.
, vol.37
, pp. 123-133
-
-
Wilson, D.N.1
Arenz, S.2
Beckmann, R.3
-
124
-
-
35548981256
-
A genomic screen in yeast reveals novel aspects of nonstop mRNA metabolism
-
Wilson MA, Meaux S, van Hoof A. 2007. A genomic screen in yeast reveals novel aspects of nonstop mRNA metabolism. Genetics 177:773-84
-
(2007)
Genetics
, vol.177
, pp. 773-784
-
-
Wilson, M.A.1
Meaux, S.2
Van Hoof, A.3
-
125
-
-
57749116022
-
Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates
-
Wohlgemuth I, Brenner S, Beringer M, Rodnina MV. 2008. Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates. J. Biol. Chem. 283:32229-35
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 32229-32235
-
-
Wohlgemuth, I.1
Brenner, S.2
Beringer, M.3
Rodnina, M.V.4
-
126
-
-
84928016073
-
Asc1, homolog of human RACK1, prevents frameshifting in yeast by ribosomes stalled at CGA codon repeats
-
Wolf AS, Grayhack EJ. 2015. Asc1, homolog of human RACK1, prevents frameshifting in yeast by ribosomes stalled at CGA codon repeats. RNA 21:935-45
-
(2015)
RNA
, vol.21
, pp. 935-945
-
-
Wolf, A.S.1
Grayhack, E.J.2
-
127
-
-
84927693301
-
High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP
-
WoolstenhulmeCJ, GuydoshNR,Green R, BuskirkAR. 2015. High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP. Cell Rep. 11:13-21
-
(2015)
Cell Rep.
, vol.11
, pp. 13-21
-
-
Woolstenhulme, C.J.1
Guydosh, N.R.2
Green, R.3
Buskirk, A.R.4
-
128
-
-
84892669376
-
EF-G and EF4: Translocation and backtranslocation on the bacterial ribosome
-
Yamamoto H, Qin Y, Achenbach J, Li C, Kijek J, et al. 2014. EF-G and EF4: translocation and backtranslocation on the bacterial ribosome. Nat. Rev. Microbiol. 12:89-100
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 89-100
-
-
Yamamoto, H.1
Qin, Y.2
Achenbach, J.3
Li, C.4
Kijek, J.5
-
129
-
-
84964290546
-
The Rqc2/Tae2 subunit of the ribosome-associated quality control (RQC) complex marks ribosome-stalled nascent polypeptide chains for aggregation
-
Yonashiro R, Tahara EB, Bengtson MH, Khokhrina M, Lorenz H, et al. 2016. The Rqc2/Tae2 subunit of the ribosome-associated quality control (RQC) complex marks ribosome-stalled nascent polypeptide chains for aggregation. eLife 5:e11794
-
(2016)
ELife
, vol.5
, pp. e11794
-
-
Yonashiro, R.1
Tahara, E.B.2
Bengtson, M.H.3
Khokhrina, M.4
Lorenz, H.5
-
130
-
-
85016145435
-
Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome
-
Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, et al. 2017. Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome. Nature 541:554-57
-
(2017)
Nature
, vol.541
, pp. 554-557
-
-
Zeng, F.1
Chen, Y.2
Remis, J.3
Shekhar, M.4
Phillips, J.C.5
-
131
-
-
57149101122
-
Single-RNA counting reveals alternative modes of gene expression in yeast
-
ZenklusenD,LarsonDR, Singer RH. 2008. Single-RNA counting reveals alternative modes of gene expression in yeast. Nat. Struct. Mol. Biol. 15:1263-71
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1263-1271
-
-
Zenklusen, D.1
Larson, D.R.2
Singer, R.H.3
|