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Volumn 1, Issue 6, 2015, Pages

Translational control by lysine-encoding A-rich sequences

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ENCODING (SYMBOLS); GENE EXPRESSION; GENE EXPRESSION REGULATION; NUCLEIC ACIDS; PROTEINS; SIGNAL ENCODING;

EID: 84956715035     PISSN: None     EISSN: 23752548     Source Type: Journal    
DOI: 10.1126/sciadv.1500154     Document Type: Article
Times cited : (85)

References (38)
  • 1
    • 45749153508 scopus 로고    scopus 로고
    • 22 Regulation of Termination and Recoding
    • J. D. Dinman, M. J. Berry, 22 Regulation of Termination and Recoding. Cold Spring Harb. Monogr. Arch. 48, 625–654 (2007); https://cshmonographs.org/index.php/monographs/article/view/3291.
    • (2007) Cold Spring Harb. Monogr. Arch. , vol.48 , pp. 625-654
    • Dinman, J.D.1    Berry, M.J.2
  • 3
    • 84861841297 scopus 로고    scopus 로고
    • Translation drives mRNA quality control
    • C. J. Shoemaker, R. Green, Translation drives mRNA quality control. Nat. Struct. Mol. Biol. 19, 594–601 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 594-601
    • Shoemaker, C.J.1    Green, R.2
  • 4
    • 33645277360 scopus 로고    scopus 로고
    • Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
    • M. K. Doma, R. Parker, Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440, 561–564 (2006).
    • (2006) Nature , vol.440 , pp. 561-564
    • Doma, M.K.1    Parker, R.2
  • 5
    • 78649656286 scopus 로고    scopus 로고
    • Control of translation efficiency in yeast by codon–anticodon interactions
    • D. P. Letzring, K. M. Dean, E. J. Grayhack, Control of translation efficiency in yeast by codon–anticodon interactions. RNA 16, 2516–2528 (2010).
    • (2010) RNA , vol.16 , pp. 2516-2528
    • Letzring, D.P.1    Dean, K.M.2    Grayhack, E.J.3
  • 6
    • 66849136862 scopus 로고    scopus 로고
    • Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome
    • L. N. Dimitrova, K. Kuroha, T. Tatematsu, T. Inada, Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome. J. Biol. Chem. 284, 10343–10352 (2009).
    • (2009) J. Biol. Chem. , vol.284 , pp. 10343-10352
    • Dimitrova, L.N.1    Kuroha, K.2    Tatematsu, T.3    Inada, T.4
  • 7
    • 78649472341 scopus 로고    scopus 로고
    • Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest
    • K. Kuroha, M. Akamatsu, L. Dimitrova, T. Ito, Y. Kato, K. Shirahige, T. Inada, Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest. EMBO Rep. 11, 956–961 (2010).
    • (2010) EMBO Rep. , vol.11 , pp. 956-961
    • Kuroha, K.1    Akamatsu, M.2    Dimitrova, L.3    Ito, T.4    Kato, Y.5    Shirahige, K.6    Inada, T.7
  • 9
    • 54249096045 scopus 로고    scopus 로고
    • Electrostatics in the ribosomal tunnel modulate chain elongation rates
    • J. Lu, C. Deutsch, Electrostatics in the ribosomal tunnel modulate chain elongation rates. J. Mol. Biol. 384, 73–86 (2008).
    • (2008) J. Mol. Biol. , vol.384 , pp. 73-86
    • Lu, J.1    Deutsch, C.2
  • 11
    • 84861456756 scopus 로고    scopus 로고
    • Dom34:Hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3′ end of aberrant mRNA
    • T. Tsuboi, K. Kuroha, K. Kudo, S. Makino, E. Inoue, I. Kashima, T. Inada, Dom34:Hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3′ end of aberrant mRNA. Mol. Cell 46, 518–529 (2012).
    • (2012) Mol. Cell , vol.46 , pp. 518-529
    • Tsuboi, T.1    Kuroha, K.2    Kudo, K.3    Makino, S.4    Inoue, E.5    Kashima, I.6    Inada, T.7
  • 13
    • 84859632747 scopus 로고    scopus 로고
    • MiRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay
    • S. Djuranovic, A. Nahvi, R. Green, miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science 336, 237–240 (2012).
    • (2012) Science , vol.336 , pp. 237-240
    • Djuranovic, S.1    Nahvi, A.2    Green, R.3
  • 14
    • 0034948006 scopus 로고    scopus 로고
    • Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3′-AUAC-5′ tetranucleotide: Implications for the mechanism of transcription termination
    • J. N. Barr, G. W. Wertz, Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3′-AUAC-5′ tetranucleotide: Implications for the mechanism of transcription termination. J. Virol. 75, 6901–6913 (2001).
    • (2001) J. Virol. , vol.75 , pp. 6901-6913
    • Barr, J.N.1    Wertz, G.W.2
  • 15
    • 0017577805 scopus 로고
    • Inhibition of translation in eukaryotic systems by harringtonine
    • M. Fresno, A. Jiménez, D. Vázquez, Inhibition of translation in eukaryotic systems by harringtonine. Eur. J. Biochem. 72, 323–330 (1977).
    • (1977) Eur. J. Biochem. , vol.72 , pp. 323-330
    • Fresno, M.1    Jiménez, A.2    Vázquez, D.3
  • 16
    • 84894318608 scopus 로고    scopus 로고
    • Ribosome profiling: New views of translation, from single codons to genome scale
    • N. T. Ingolia, Ribosome profiling: New views of translation, from single codons to genome scale. Nat. Rev. Genet. 15, 205–213 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 205-213
    • Ingolia, N.T.1
  • 17
    • 84875465945 scopus 로고    scopus 로고
    • Positively charged residues are the major determinants of ribosomal velocity
    • C. A. Charneski, L. D. Hurst, Positively charged residues are the major determinants of ribosomal velocity. PLOS Biol. 11, e1001508 (2013).
    • (2013) PLOS Biol. , vol.11 , pp. e1001508
    • Charneski, C.A.1    Hurst, L.D.2
  • 20
    • 34047121587 scopus 로고    scopus 로고
    • The gateway pDEST17 expression vector encodes a −1 ribosomal frameshifting sequence
    • E. J. Belfield, R. K. Hughes, N. Tsesmetzis, M. J. Naldrett, R. Casey, The gateway pDEST17 expression vector encodes a −1 ribosomal frameshifting sequence. Nucleic Acids Res. 35, 1322–1332 (2007).
    • (2007) Nucleic Acids Res. , vol.35 , pp. 1322-1332
    • Belfield, E.J.1    Hughes, R.K.2    Tsesmetzis, N.3    Naldrett, M.J.4    Casey, R.5
  • 22
    • 84923378894 scopus 로고    scopus 로고
    • Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways
    • S. Yan, J. D. Wen, C. Bustamante, I. Tinoco Jr., Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways. Cell 160, 870–881 (2015).
    • (2015) Cell , vol.160 , pp. 870-881
    • Yan, S.1    Wen, J.D.2    Bustamante, C.3    Tinoco, I.4
  • 24
    • 79954611142 scopus 로고    scopus 로고
    • Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast
    • A. T. Belew, V. M. Advani, J. D. Dinman, Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast. Nucleic Acids Res. 39, 2799–2808 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2799-2808
    • Belew, A.T.1    Advani, V.M.2    Dinman, J.D.3
  • 26
    • 0034704201 scopus 로고    scopus 로고
    • Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
    • J. Lykke-Andersen, M. D. Shu, J. A. Steitz, Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103, 1121–1131 (2000).
    • (2000) Cell , vol.103 , pp. 1121-1131
    • Lykke-Andersen, J.1    Shu, M.D.2    Steitz, J.A.3
  • 27
    • 0035801373 scopus 로고    scopus 로고
    • The exon–exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
    • H. Le Hir, D. Gatfield, E. Izaurralde, M. J. Moore, The exon–exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J. 20, 4987–4997 (2001).
    • (2001) EMBO J. , vol.20 , pp. 4987-4997
    • Le Hir, H.1    Gatfield, D.2    Izaurralde, E.3    Moore, M.J.4
  • 28
    • 34247197937 scopus 로고    scopus 로고
    • The nonsense-mediated decay RNA surveillance pathway
    • Y.-F. Chang, J. S. Imam, M. F. Wilkinson, The nonsense-mediated decay RNA surveillance pathway. Annu. Rev. Biochem. 76, 51–74 (2007).
    • (2007) Annu. Rev. Biochem. , vol.76 , pp. 51-74
    • Chang, Y.-F.1    Imam, J.S.2    Wilkinson, M.F.3
  • 29
    • 84888617099 scopus 로고    scopus 로고
    • Organizing principles of mammalian nonsense-mediated mRNA decay
    • M. W.-L. Popp, L. E. Maquat, Organizing principles of mammalian nonsense-mediated mRNA decay. Annu. Rev. Genet. 47, 139–165 (2013).
    • (2013) Annu. Rev. Genet. , vol.47 , pp. 139-165
    • Popp, M.W.-L.1    Maquat, L.E.2
  • 32
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • G. S. Slater, E. Birney, Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6, 31 (2005).
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 34
    • 84890231951 scopus 로고    scopus 로고
    • Ribosome profiling reveals features of normal and disease-associated mitochondrial translation
    • K. Rooijers, F. Loayza-Puch, L. G. Nijtmans, R. Agami, Ribosome profiling reveals features of normal and disease-associated mitochondrial translation. Nat. Commun. 4, 2886 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2886
    • Rooijers, K.1    Loayza-Puch, F.2    Nijtmans, L.G.3    Agami, R.4
  • 35
    • 84876093209 scopus 로고    scopus 로고
    • P53 induces transcriptional and translational programs to suppress cell proliferation and growth
    • F. Loayza-Puch, J. Drost, K. Rooijers, R. Lopes, R. Elkon, R. Agami, p53 induces transcriptional and translational programs to suppress cell proliferation and growth. Genome Biol. 14, R32 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R32
    • Loayza-Puch, F.1    Drost, J.2    Rooijers, K.3    Lopes, R.4    Elkon, R.5    Agami, R.6
  • 36
    • 84864453787 scopus 로고    scopus 로고
    • The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
    • N. T. Ingolia, G. A. Brar, S. Rouskin, A. M. McGeachy, J. S. Weissman, The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat. Protoc. 7, 1534–1550 (2012).
    • (2012) Nat. Protoc. , vol.7 , pp. 1534-1550
    • Ingolia, N.T.1    Brar, G.A.2    Rouskin, S.3    McGeachy, A.M.4    Weissman, J.S.5
  • 37
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • B. Langmead, C. Trapnell, M. Pop, S. L. Salzberg, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 38
    • 84878496035 scopus 로고    scopus 로고
    • From mouse to human: Evolutionary genomics analysis of human orthologs of essential genes
    • B. Georgi, B. F. Voight, M. Bućan, From mouse to human: Evolutionary genomics analysis of human orthologs of essential genes. PLOS Genet. 9, e1003484 (2013).
    • (2013) PLOS Genet. , vol.9
    • Georgi, B.1    Voight, B.F.2    Bućan, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.