-
1
-
-
84954207877
-
Ribosome-associated protein quality control
-
Brandman, O. & Hegde, R. S. Ribosome-associated protein quality control. Nat. Struct. Mol. Biol. 23, 7-15 (2016).
-
(2016)
Nat. Struct. Mol. Biol.
, vol.23
, pp. 7-15
-
-
Brandman, O.1
Hegde, R.S.2
-
2
-
-
84861841297
-
Translation drives mRNA quality control
-
Shoemaker, C. J. & Green, R. Translation drives mRNA quality control. Nat. Struct. Mol. Biol. 19, 594-601 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 594-601
-
-
Shoemaker, C.J.1
Green, R.2
-
3
-
-
33847771442
-
The highways and byways of mRNA decay
-
Garneau, N. L., Wilusz, J. & Wilusz, C. J. The highways and byways of mRNA decay. Nat. Rev. Mol. Cell Biol. 8, 113-126 (2007).
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 113-126
-
-
Garneau, N.L.1
Wilusz, J.2
Wilusz, C.J.3
-
4
-
-
84930635335
-
NMD: At the crossroads between translation termination and ribosome recycling
-
Celik, A., Kervestin, S. & Jacobson, A. NMD: at the crossroads between translation termination and ribosome recycling. Biochimie 114, 2-9 (2015).
-
(2015)
Biochimie
, vol.114
, pp. 2-9
-
-
Celik, A.1
Kervestin, S.2
Jacobson, A.3
-
5
-
-
0036715205
-
Non-stop decay-A new mRNA surveillance pathway
-
Vasudevan, S., Peltz, S. W. & Wilusz, C. J. Non-stop decay-a new mRNA surveillance pathway. Bioessays 24, 785-788 (2002).
-
(2002)
Bioessays
, vol.24
, pp. 785-788
-
-
Vasudevan, S.1
Peltz, S.W.2
Wilusz, C.J.3
-
6
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma, M. K. & Parker, R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440, 561-564 (2006).
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
7
-
-
33947159090
-
Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast
-
Ito-Harashima, S., Kuroha, K., Tatematsu, T. & Inada, T. Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast. Genes Dev. 21, 519-524 (2007).
-
(2007)
Genes Dev.
, vol.21
, pp. 519-524
-
-
Ito-Harashima, S.1
Kuroha, K.2
Tatematsu, T.3
Inada, T.4
-
8
-
-
33745587550
-
Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay
-
Meaux, S. & Van Hoof, A. Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay. RNA 12, 1323-1337 (2006).
-
(2006)
RNA
, vol.12
, pp. 1323-1337
-
-
Meaux, S.1
Van Hoof, A.2
-
9
-
-
84871523350
-
A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress
-
Brandman, O. et al. A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell 151, 1042-1054 (2012).
-
(2012)
Cell
, vol.151
, pp. 1042-1054
-
-
Brandman, O.1
-
10
-
-
84909606327
-
Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex
-
Lyumkis, D. et al. Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex. Proc. Natl Acad. Sci. USA 111, 15981-15986 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 15981-15986
-
-
Lyumkis, D.1
-
11
-
-
77957935294
-
Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay
-
Shoemaker, C. J., Eyler, D. E. & Green, R. Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay. Science 330, 369-372 (2010).
-
(2010)
Science
, vol.330
, pp. 369-372
-
-
Shoemaker, C.J.1
Eyler, D.E.2
Green, R.3
-
12
-
-
79955626576
-
Dissociation by Pelota Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes
-
Pisareva, V. P., Skabkin, M. A, Hellen, C. U. T., Pestova, T. V & Pisarev, A. V. Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes. EMBO J. 30, 1804-1817 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 1804-1817
-
-
Pisareva, V.P.1
Skabkin, M.A.2
Hellen, C.U.T.3
Pestova, T.V.4
Pisarev, A.V.5
-
13
-
-
34748898889
-
Structural and functional insights into Dom34, a key component of no-go mRNA decay
-
Lee, H. H. et al. Structural and functional insights into Dom34, a key component of no-go mRNA decay. Mol. Cell 27, 938-950 (2007).
-
(2007)
Mol. Cell
, vol.27
, pp. 938-950
-
-
Lee, H.H.1
-
14
-
-
85006717944
-
Structure and assembly pathway of the ribosome quality control complex
-
Shao, S., Brown, A., Santhanam, B. & Hegde, R. S. Structure and assembly pathway of the ribosome quality control complex. Mol. Cell 34, 1-12 (2015).
-
(2015)
Mol. Cell
, vol.34
, pp. 1-12
-
-
Shao, S.1
Brown, A.2
Santhanam, B.3
Hegde, R.S.4
-
15
-
-
43749122141
-
Structure of yeast Dom34: A protein related to translation termination factor Erf1 and involved in No-Go decay
-
Graille, M., Chaillet, M. & van Tilbeurgh, H. Structure of yeast Dom34: a protein related to translation termination factor Erf1 and involved in No-Go decay. J. Biol. Chem. 283, 7145-7154 (2008).
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 7145-7154
-
-
Graille, M.1
Chaillet, M.2
Van Tilbeurgh, H.3
-
16
-
-
78649839805
-
Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways
-
van den Elzen, A. M. G. et al. Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways. Nat. Struct. Mol. Biol. 17, 1446-1452 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1446-1452
-
-
Van Den Elzen, A.M.G.1
-
17
-
-
77957801203
-
Structure of the Dom34-Hbs1 complex and implications for no-go decay
-
Chen, L. et al. Structure of the Dom34-Hbs1 complex and implications for no-go decay. Nat. Struct. Mol. Biol. 17, 1233-1240 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1233-1240
-
-
Chen, L.1
-
18
-
-
78049291491
-
Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1a complex
-
Kobayashi, K. et al. Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1a complex. Proc. Natl Acad. Sci. USA 107, 17575-17579 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 17575-17579
-
-
Kobayashi, K.1
-
19
-
-
79958809003
-
Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome
-
Becker, T. et al. Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. Nat. Struct. Mol. Biol. 18, 715-720 (2011).
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 715-720
-
-
Becker, T.1
-
20
-
-
84924918778
-
Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES
-
Muhs, M. et al. Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES. Mol. Cell 57, 422-432 (2015).
-
(2015)
Mol. Cell
, vol.57
, pp. 422-432
-
-
Muhs, M.1
-
21
-
-
84898979378
-
Structure of the mammalian ribosomal pre-termination complex associated with eRF1.eRF3.GDPNP
-
des Georges, A. et al. Structure of the mammalian ribosomal pre-termination complex associated with eRF1.eRF3.GDPNP. Nucleic Acids Res. 42, 3409-3418 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3409-3418
-
-
Des Georges, A.1
-
22
-
-
84904434651
-
Cryoelectron microscopic structures of eukaryotic translation termination complexes containing eRF1-eRF3 or eRF1-ABCE1
-
Preis, A. et al. Cryoelectron microscopic structures of eukaryotic translation termination complexes containing eRF1-eRF3 or eRF1-ABCE1. Cell Rep. 8, 1-7 (2014).
-
(2014)
Cell Rep.
, vol.8
, pp. 1-7
-
-
Preis, A.1
-
23
-
-
84940478899
-
Structural basis for stop codon recognition in eukaryotes
-
Brown, A., Shao, S., Murray, J., Hegde, R. S. & Ramakrishnan, V. Structural basis for stop codon recognition in eukaryotes. Nature 524, 493-496 (2015).
-
(2015)
Nature
, vol.524
, pp. 493-496
-
-
Brown, A.1
Shao, S.2
Murray, J.3
Hegde, R.S.4
Ramakrishnan, V.5
-
24
-
-
77957255312
-
Multiparticle cryo-EM of ribosomes
-
Loerke, J., Giesebrecht, J. & Spahn, C. M. T. Multiparticle cryo-EM of ribosomes. Methods Enzymol. 483, 161-177 (2010).
-
(2010)
Methods Enzymol.
, vol.483
, pp. 161-177
-
-
Loerke, J.1
Giesebrecht, J.2
Spahn, C.M.T.3
-
25
-
-
84903950561
-
Regulation of the mammalian elongation cycle by subunit rolling: A eukaryotic-specific ribosome rearrangement
-
Budkevich, T. V. et al. Regulation of the mammalian elongation cycle by subunit rolling: a eukaryotic-specific ribosome rearrangement. Cell 158, 121-131 (2014).
-
(2014)
Cell
, vol.158
, pp. 121-131
-
-
Budkevich, T.V.1
-
26
-
-
84861456756
-
Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA
-
Tsuboi, T. et al. Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA. Mol. Cell 46, 518-529 (2012).
-
(2012)
Mol. Cell
, vol.46
, pp. 518-529
-
-
Tsuboi, T.1
-
27
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
Schmeing, T. M. et al. The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science 326, 688-694 (2009).
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
-
28
-
-
78149302861
-
The mechanism for activation of GTP hydrolysis on the ribosome
-
Voorhees, R. M., Schmeing, T. M., Kelley, A. C. & Ramakrishnan, V. The mechanism for activation of GTP hydrolysis on the ribosome. Science 330, 835-838 (2010).
-
(2010)
Science
, vol.330
, pp. 835-838
-
-
Voorhees, R.M.1
Schmeing, T.M.2
Kelley, A.C.3
Ramakrishnan, V.4
-
29
-
-
84971645643
-
Structural characterization of ribosome recruitment and translocation by type IV IRES
-
Murray, J. et al. Structural characterization of ribosome recruitment and translocation by type IV IRES. Elife 5, 1-24 (2016).
-
(2016)
Elife
, vol.5
, pp. 1-24
-
-
Murray, J.1
-
30
-
-
84940478899
-
Structural basis for stop codon recognition in eukaryotes
-
Brown, A., Shao, S., Murray, J., Hegde, R. S. & Ramakrishnan, V. Structural basis for stop codon recognition in eukaryotes. Nature 524, 493-496 (2015).
-
(2015)
Nature
, vol.524
, pp. 493-496
-
-
Brown, A.1
Shao, S.2
Murray, J.3
Hegde, R.S.4
Ramakrishnan, V.5
-
31
-
-
84928954734
-
Structural snapshots of actively translating human ribosomes
-
Behrmann, E. et al. Structural snapshots of actively translating human ribosomes. Cell 161, 845-857 (2015).
-
(2015)
Cell
, vol.161
, pp. 845-857
-
-
Behrmann, E.1
-
32
-
-
84858309380
-
Structural basis for the rescue of stalled ribosomes: Structure of YaeJ bound to the ribosome
-
Gagnon, M. G., Seetharaman, S. V, Bulkley, D. & Steitz, T.A. Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science 335, 1370-1372 (2012).
-
(2012)
Science
, vol.335
, pp. 1370-1372
-
-
Gagnon, M.G.1
Seetharaman, S.V.2
Bulkley, D.3
Steitz, T.A.4
-
33
-
-
79953142009
-
YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes
-
Handa, Y., Inaho, N. & Nameki, N. YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes. Nucleic Acids Res. 39, 1739-1748 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1739-1748
-
-
Handa, Y.1
Inaho, N.2
Nameki, N.3
-
34
-
-
84855501083
-
Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast
-
Shoemaker, C. J. & Green, R. Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast. Proc. Natl Acad. Sci. USA 108, E1392-E1398 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. E1392-E1398
-
-
Shoemaker, C.J.1
Green, R.2
-
35
-
-
67650436091
-
Analysis of Dom34 and its function in no-go decay
-
Passos, D. O. et al. Analysis of Dom34 and its function in no-go decay. Mol. Biol. Cell 20, 3025-3032 (2009).
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 3025-3032
-
-
Passos, D.O.1
-
36
-
-
49249133699
-
Features of 80S mammalian ribosome and its subunits
-
Budkevich, T. V, El'skaya, A. V & Nierhaus, K. H. Features of 80S mammalian ribosome and its subunits. Nucleic Acids Res. 36, 4736-4744 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4736-4744
-
-
Budkevich, T.V.1
El'Skaya, A.V.2
Nierhaus, K.H.3
-
37
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
38
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li, X. et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat. Methods 10, 584-590 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
-
39
-
-
84946488108
-
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
-
Rohou, A. & Grigorieff, N. CTFFIND4: fast and accurate defocus estimation from electron micrographs. J. Struct. Biol. 192, 216-221 (2015).
-
(2015)
J. Struct. Biol.
, vol.192
, pp. 216-221
-
-
Rohou, A.1
Grigorieff, N.2
-
40
-
-
33845449481
-
SIGNATURE: A single-particle selection system for molecular electron microscopy
-
Chen, J. Z. & Grigorieff, N. SIGNATURE: a single-particle selection system for molecular electron microscopy. J. Struct. Biol. 157, 168-173 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 168-173
-
-
Chen, J.Z.1
Grigorieff, N.2
-
41
-
-
0029975088
-
SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
-
Frank, J. et al. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116, 190-199 (1996).
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
-
42
-
-
84946473054
-
Alignment of cryo-EM movies of individual particles by optimization of image translations
-
Rubinstein, J. L. & Brubaker, M.A. Alignment of cryo-EM movies of individual particles by optimization of image translations. J. Stuct. Biol. 192, 188-195 (2015).
-
(2015)
J. Stuct. Biol.
, vol.192
, pp. 188-195
-
-
Rubinstein, J.L.1
Brubaker, M.A.2
-
43
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S. H. W. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180, 519-530 (2012).
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.W.1
-
44
-
-
33845348200
-
FREALIGN: High-resolution refinement of single particle structures
-
Grigorieff, N. FREALIGN: high-resolution refinement of single particle structures. J. Struct. Biol. 157, 117-125 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 117-125
-
-
Grigorieff, N.1
-
45
-
-
25144499763
-
Resmap: Automated representation of macromolecular interfaces as two-dimensional networks
-
Swint-Kruse, L. & Brown, C. S. Resmap: automated representation of macromolecular interfaces as two-dimensional networks. Bioinformatics 21, 3327-3328 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 3327-3328
-
-
Swint-Kruse, L.1
Brown, C.S.2
-
46
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0A resolution
-
Ben-Shem, A. et al. The structure of the eukaryotic ribosome at 3.0A resolution. Science 334, 1524-1529 (2011).
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
-
47
-
-
0033862354
-
The crystal structure of yeast phenylalanine tRNA at 1.93A resolution: A classic structure revisited
-
Shi, H. & Moore, P. B. The crystal structure of yeast phenylalanine tRNA at 1.93A resolution: a classic structure revisited. RNA 6, 1091-1105 (2000).
-
(2000)
RNA
, vol.6
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.B.2
-
48
-
-
4444221565
-
UCSF chimera-A visualization system for exploratory research and analysis
-
Pettersen, E. F. et al. UCSF chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
51
-
-
84909949436
-
PHENIX news
-
Afonine, P. V, Headd, J. J., Terwilliger, T. C. & Adams, P. D. PHENIX news. Comput. Crystallogr. Newslett. 4, 43-44 (2013).
-
(2013)
Comput. Crystallogr. Newslett.
, vol.4
, pp. 43-44
-
-
Afonine, P.V.1
Headd, J.J.2
Terwilliger, T.C.3
Adams, P.D.4
-
52
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D. Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
53
-
-
84892797558
-
Architecture of the large subunit of the mammalian mitochondrial ribosome
-
Greber, B. J. et al. Architecture of the large subunit of the mammalian mitochondrial ribosome. Nature 505, 515-519 (2014).
-
(2014)
Nature
, vol.505
, pp. 515-519
-
-
Greber, B.J.1
|