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Volumn 11, Issue 12, 2015, Pages

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast

Author keywords

[No Author keywords available]

Indexed keywords

CODON; CYCLOHEXIMIDE; PROTEIN SYNTHESIS INHIBITOR; SACCHAROMYCES CEREVISIAE PROTEIN; TRANSFER RNA;

EID: 84953284492     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1005732     Document Type: Article
Times cited : (163)

References (49)
  • 1
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • Steitz TA, A structural understanding of the dynamic ribosome machine. Nature Reviews Molecular Cell Biology. 2008;9(3):242–253. doi: 10.1038/nrm2352 18292779
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , Issue.3 , pp. 242-253
    • Steitz, T.A.1
  • 2
    • 0030970289 scopus 로고    scopus 로고
    • Ribosomes and translation
    • Green R, Noller HF, Ribosomes and translation. Annual Review of Biochemistry. 1997;66:679–716. doi: 10.1146/annurev.biochem.66.1.679 9242921
    • (1997) Annual Review of Biochemistry , vol.66 , pp. 679-716
    • Green, R.1    Noller, H.F.2
  • 3
    • 3943080710 scopus 로고    scopus 로고
    • The molecular mechanics of eukaryotic translation
    • Kapp LD, Lorsch JR, The molecular mechanics of eukaryotic translation. Annual Review of Biochemistry. 2004;73:657–704. doi: 10.1146/annurev.biochem.73.030403.080419 15189156
    • (2004) Annual Review of Biochemistry , vol.73 , pp. 657-704
    • Kapp, L.D.1    Lorsch, J.R.2
  • 4
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • Dittmar KA, Goodenbour JM, Pan T, Tissue-specific differences in human transfer RNA expression. PLoS Genetics. 2006;2(12):2107–2115. doi: 10.1371/journal.pgen.0020221
    • (2006) PLoS Genetics , vol.2 , Issue.12 , pp. 2107-2115
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 5
    • 77951715627 scopus 로고    scopus 로고
    • An evolutionarily conserved mechanism for controlling the efficiency of protein translation
    • Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, et al. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell. 2010 Apr;141(2):344–54. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20403328 doi: 10.1016/j.cell.2010.03.031 20403328
    • (2010) Cell , vol.141 , Issue.2 , pp. 344-354
    • Tuller, T.1    Carmi, A.2    Vestsigian, K.3    Navon, S.4    Dorfan, Y.5    Zaborske, J.6
  • 6
    • 0021764898 scopus 로고
    • Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains
    • Varenne S, Buc J, Lloubes R, Lazdunski C, Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. Journal of Molecular Biology. 1984 Dec;180(3):549–76. Available from: http://www.ncbi.nlm.nih.gov/pubmed/6084718 doi: 10.1016/0022-2836(84)90027-5 6084718
    • (1984) Journal of Molecular Biology , vol.180 , Issue.3 , pp. 549-576
    • Varenne, S.1    Buc, J.2    Lloubes, R.3    Lazdunski, C.4
  • 7
    • 17444449538 scopus 로고    scopus 로고
    • Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
    • Percudani R, Pavesi A, Ottonello S, Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. Journal of Molecular Biology. 1997;268(2):322–330. doi: 10.1006/jmbi.1997.0942 9159473
    • (1997) Journal of Molecular Biology , vol.268 , Issue.2 , pp. 322-330
    • Percudani, R.1    Pavesi, A.2    Ottonello, S.3
  • 8
    • 71849108697 scopus 로고    scopus 로고
    • Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes
    • Grosjean H, de Crécy-Lagard V, Marck C, Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes. FEBS Letters. 2010;584(2):252–264. Available from: http://dx.doi.org/10.1016/j.febslet.2009.11.052 19931533
    • (2010) FEBS Letters , vol.584 , Issue.2 , pp. 252-264
    • Grosjean, H.1    de Crécy-Lagard, V.2    Marck, C.3
  • 9
    • 43249104840 scopus 로고    scopus 로고
    • Eukaryotic wobble uridine modifications promote a functionally redundant decoding system
    • Johansson MJO, Esberg A, Huang B, Björk GR, Byström AS, Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Molecular and Cellular Biology. 2008;28(10):3301–3312. doi: 10.1128/MCB.01542-07 18332122
    • (2008) Molecular and Cellular Biology , vol.28 , Issue.10 , pp. 3301-3312
    • Johansson, M.J.O.1    Esberg, A.2    Huang, B.3    Björk, G.R.4    Byström, A.S.5
  • 10
    • 78649656286 scopus 로고    scopus 로고
    • Control of translation efficiency in yeast by codon–anticodon interactions
    • Letzring DP, Dean KM, Grayhack EJ, Control of translation efficiency in yeast by codon–anticodon interactions. RNA. 2010;p. 2516–2528. doi: 10.1261/rna.2411710 20971810
    • (2010) RNA , pp. 2516-2528
    • Letzring, D.P.1    Dean, K.M.2    Grayhack, E.J.3
  • 11
    • 81755184408 scopus 로고    scopus 로고
    • Wobble base-pairing slows in vivo translation elongation in metazoans
    • Stadler M, Fire A, Wobble base-pairing slows in vivo translation elongation in metazoans. RNA. 2011;p. 2073.
    • (2011) RNA , pp. 2073
    • Stadler, M.1    Fire, A.2
  • 12
    • 84928016073 scopus 로고    scopus 로고
    • Asc1, homolog of human RACK1, prevents frameshifting in yeast by ribosomes stalled at CGA codon repeats
    • Wolf AS, Grayhack EJ, Asc1, homolog of human RACK1, prevents frameshifting in yeast by ribosomes stalled at CGA codon repeats. RNA. 2015;p. 1–11.
    • (2015) RNA , pp. 1-11
    • Wolf, A.S.1    Grayhack, E.J.2
  • 13
    • 84913573216 scopus 로고    scopus 로고
    • Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation
    • Artieri CG, Fraser HB, Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation. Genome Research. 2014;p. 2011–2021. doi: 10.1101/gr.175893.114 25294246
    • (2014) Genome Research , pp. 2011-2021
    • Artieri, C.G.1    Fraser, H.B.2
  • 14
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: the causes and consequences of codon bias
    • Plotkin JB, Kudla G, Synonymous but not the same: the causes and consequences of codon bias. Nature Reviews Genetics. 2011 Jan;12(1):32–42. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3074964&tool=pmcentrez&rendertype=abstract doi: 10.1038/nrg2899 21102527
    • (2011) Nature Reviews Genetics , vol.12 , Issue.1 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 15
    • 62549134121 scopus 로고    scopus 로고
    • Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
    • Ingolia NT, Ghaemmaghami S, Newman JRS, Weissman JS, Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling. Science. 2009;324(April). doi: 10.1126/science.1168978 19213877
    • (2009) Science , vol.324 , Issue.April
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.S.3    Weissman, J.S.4
  • 16
    • 77956024408 scopus 로고    scopus 로고
    • Genome-wide translational profiling by ribosome footprinting
    • Ingolia NT, Genome-wide translational profiling by ribosome footprinting. Methods in Enzymology; 2010. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20946809 doi: 10.1016/S0076-6879(10)70006-9 20946809
    • (2010) Methods in Enzymology
    • Ingolia, N.T.1
  • 17
    • 84864453787 scopus 로고    scopus 로고
    • The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
    • Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS, The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nature Protocols. 2012 Aug;7(8):1534–50. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3535016&tool=pmcentrez&rendertype=abstract doi: 10.1038/nprot.2012.086 22836135
    • (2012) Nature Protocols , vol.7 , Issue.8 , pp. 1534-1550
    • Ingolia, N.T.1    Brar, G.A.2    Rouskin, S.3    McGeachy, A.M.4    Weissman, J.S.5
  • 18
    • 84894318608 scopus 로고    scopus 로고
    • Ribosome profiling: new views of translation, from single codons to genome scale
    • Ingolia NT, Ribosome profiling: new views of translation, from single codons to genome scale. Nature Reviews Genetics. 2014 Mar;15(3):205–13. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24468696 doi: 10.1038/nrg3645 24468696
    • (2014) Nature Reviews Genetics , vol.15 , Issue.3 , pp. 205-213
    • Ingolia, N.T.1
  • 19
    • 77249087063 scopus 로고    scopus 로고
    • Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
    • Schneider-Poetsch T, Ju J, Eyler DE, Dang Y, Bhat S, Merrick WC, et al. Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nature Chemical Biology. 2010 Mar;6(3):209–217. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2831214&tool=pmcentrez&rendertype=abstract doi: 10.1038/nchembio.304 20118940
    • (2010) Nature Chemical Biology , vol.6 , Issue.3 , pp. 209-217
    • Schneider-Poetsch, T.1    Ju, J.2    Eyler, D.E.3    Dang, Y.4    Bhat, S.5    Merrick, W.C.6
  • 20
    • 84908546298 scopus 로고    scopus 로고
    • Structural basis for the inhibition of the eukaryotic ribosome
    • de Loubresse NG, Prokhorova I, Holtkamp W, Rodnina MV, Yusupova G, Yusupov M, Structural basis for the inhibition of the eukaryotic ribosome. Nature. 2014 Sep;513(7519):517–522. Available from: http://www.nature.com/doifinder/10.1038/nature13737
    • (2014) Nature , vol.513 , Issue.7519 , pp. 517-522
    • de Loubresse, N.G.1    Prokhorova, I.2    Holtkamp, W.3    Rodnina, M.V.4    Yusupova, G.5    Yusupov, M.6
  • 21
    • 84856625798 scopus 로고    scopus 로고
    • High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling
    • Brar GA, Yassour M, Friedman N, Regev A, Ingolia NT, Weissman JS, High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling. Science. 2012 feb;335(6068):552–557. Available from: http://www.sciencemag.org/content/335/6068/552.short http://www.sciencemag.org/cgi/doi/10.1126/science.1215110 22194413
    • (2012) Science , vol.335 , Issue.6068 , pp. 552-557
    • Brar, G.A.1    Yassour, M.2    Friedman, N.3    Regev, A.4    Ingolia, N.T.5    Weissman, J.S.6
  • 22
    • 84867919856 scopus 로고    scopus 로고
    • Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress
    • Gerashchenko MV, Lobanov AV, Gladyshev VN, Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress. Proceedings of the National Academy of Sciences of the United States of America. 2012 Oct;109(43):17394–9. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3491468&tool=pmcentrez&rendertype=abstract doi: 10.1073/pnas.1120799109 23045643
    • (2012) Proceedings of the National Academy of Sciences of the United States of America , vol.109 , Issue.43 , pp. 17394-17399
    • Gerashchenko, M.V.1    Lobanov, A.V.2    Gladyshev, V.N.3
  • 23
    • 84884598021 scopus 로고    scopus 로고
    • Loss of a conserved tRNA anticodon modification perturbs cellular signaling
    • Zinshteyn B, Gilbert WV, Loss of a conserved tRNA anticodon modification perturbs cellular signaling. PLoS Genetics. 2013 Aug;9(8):e1003675. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3731203&tool=pmcentrez&rendertype=abstract doi: 10.1371/journal.pgen.1003675 23935536
    • (2013) PLoS Genetics , vol.9 , Issue.8 , pp. e1003675
    • Zinshteyn, B.1    Gilbert, W.V.2
  • 24
    • 84889593808 scopus 로고    scopus 로고
    • Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
    • Dunn JG, Foo CK, Belletier NG, Gavis ER, Weissman JS, Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. eLife. 2013 Jan;2:e01179. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3840789&tool=pmcentrez&rendertype=abstract doi: 10.7554/eLife.01179 24302569
    • (2013) eLife , vol.2 , pp. e01179
    • Dunn, J.G.1    Foo, C.K.2    Belletier, N.G.3    Gavis, E.R.4    Weissman, J.S.5
  • 25
    • 84895531783 scopus 로고    scopus 로고
    • Evolution at two levels of gene expression in yeast
    • Artieri CG, Fraser HB, Evolution at two levels of gene expression in yeast. Genome Research. 2014 Mar;24(3):411–21. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24318729 doi: 10.1101/gr.165522.113 24318729
    • (2014) Genome Research , vol.24 , Issue.3 , pp. 411-421
    • Artieri, C.G.1    Fraser, H.B.2
  • 26
    • 84900489620 scopus 로고    scopus 로고
    • Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
    • Lareau LF, Hite DH, Hogan GJ, Brown PO, Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments. eLife. 2014 Jan;3:e01257. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4052883&tool=pmcentrez&rendertype=abstract doi: 10.7554/eLife.01257 24842990
    • (2014) eLife , vol.3 , pp. e01257
    • Lareau, L.F.1    Hite, D.H.2    Hogan, G.J.3    Brown, P.O.4
  • 27
    • 84895525650 scopus 로고    scopus 로고
    • Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
    • McManus CJ, May GE, Spealman P, Shteyman A, Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast. Genome Research. 2014 Mar;24(3):422–30. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3941107&tool=pmcentrez&rendertype=abstract doi: 10.1101/gr.164996.113 24318730
    • (2014) Genome Research , vol.24 , Issue.3 , pp. 422-430
    • McManus, C.J.1    May, G.E.2    Spealman, P.3    Shteyman, A.4
  • 28
    • 84908326045 scopus 로고    scopus 로고
    • Genetic Influences on Translation in Yeast
    • Albert FW, Muzzey D, Weissman JS, Kruglyak L, Genetic Influences on Translation in Yeast. PLoS Genetics. 2014;10(10):e1004692. Available from: http://dx.plos.org/10.1371/journal.pgen.1004692 25340754
    • (2014) PLoS Genetics , vol.10 , Issue.10 , pp. e1004692
    • Albert, F.W.1    Muzzey, D.2    Weissman, J.S.3    Kruglyak, L.4
  • 29
    • 84931576485 scopus 로고    scopus 로고
    • Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity Article Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity
    • Nedialkova DD, Leidel Sa, Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity Article Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity. Cell. 2015;p. 1–13. Available from: http://dx.doi.org/10.1016/j.cell.2015.05.022
    • (2015) Cell , pp. 1-13
    • Nedialkova, D.D.1    Leidel, S.2
  • 30
    • 84938834141 scopus 로고    scopus 로고
    • Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A
    • Sen ND, Zhou F, Ingolia NT, Hinnebusch AG, Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A. Genome Research. 2015;p. 1–10.
    • (2015) Genome Research , pp. 1-10
    • Sen, N.D.1    Zhou, F.2    Ingolia, N.T.3    Hinnebusch, A.G.4
  • 31
    • 84859219968 scopus 로고    scopus 로고
    • Balanced codon usage optimizes eukaryotic translational efficiency
    • Qian W, Yang JR, Pearson NM, Maclean C, Zhang J, Balanced codon usage optimizes eukaryotic translational efficiency. PLoS Genetics. 2012 Jan;8(3):e1002603. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3315465&tool=pmcentrez&rendertype=abstract doi: 10.1371/journal.pgen.1002603 22479199
    • (2012) PLoS Genetics , vol.8 , Issue.3 , pp. e1002603
    • Qian, W.1    Yang, J.R.2    Pearson, N.M.3    Maclean, C.4    Zhang, J.5
  • 32
    • 84875465945 scopus 로고    scopus 로고
    • Positively Charged Residues Are the Major Determinants of Ribosomal Velocity
    • Charneski CA, Hurst LD, Positively Charged Residues Are the Major Determinants of Ribosomal Velocity. PLoS Biology. 2013;11(3). doi: 10.1371/journal.pbio.1001508 23554576
    • (2013) PLoS Biology , vol.11 , Issue.3
    • Charneski, C.A.1    Hurst, L.D.2
  • 33
    • 84964314754 scopus 로고    scopus 로고
    • Measurement of average decoding rates of the 61 sense codons in vivo
    • Gardin J, Yeasmin R, Yurovsky A, Cai Y, Skiena S, Futcher B, Measurement of average decoding rates of the 61 sense codons in vivo. eLife. 2014 Jan;3:1–20. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25347064 doi: 10.7554/eLife.03735
    • (2014) eLife , vol.3 , pp. 1-20
    • Gardin, J.1    Yeasmin, R.2    Yurovsky, A.3    Cai, Y.4    Skiena, S.5    Futcher, B.6
  • 34
    • 84964315924 scopus 로고    scopus 로고
    • Translation inhibitors cause abnormalities in ribosome profiling experiments
    • Gerashchenko MV, Gladyshev VN, Translation inhibitors cause abnormalities in ribosome profiling experiments. Nucleic Acids Research. 2014 Jul;42(17):1–7. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25056308 doi: 10.1093/nar/gku671
    • (2014) Nucleic Acids Research , vol.42 , Issue.17 , pp. 1-7
    • Gerashchenko, M.V.1    Gladyshev, V.N.2
  • 35
    • 84896863244 scopus 로고    scopus 로고
    • Dom34 Rescues Ribosomes in 3’ Untranslated Regions
    • Guydosh NR, Green R, Dom34 Rescues Ribosomes in 3’ Untranslated Regions. Cell. 2014 Feb;156(5):950–962. Available from: http://linkinghub.elsevier.com/retrieve/pii/S0092867414001627 doi: 10.1016/j.cell.2014.02.006 24581494
    • (2014) Cell , vol.156 , Issue.5 , pp. 950-962
    • Guydosh, N.R.1    Green, R.2
  • 37
    • 84939508757 scopus 로고    scopus 로고
    • Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3’UTRs In Vivo
    • Young DJ, Guydosh NR, Zhang F, Hinnebusch AG, Green R, Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3’UTRs In Vivo. Cell. 2015;162(4):872–84. Available from: http://www.ncbi.nlm.nih.gov/pubmed/26276635 doi: 10.1016/j.cell.2015.07.041 26276635
    • (2015) Cell , vol.162 , Issue.4 , pp. 872-884
    • Young, D.J.1    Guydosh, N.R.2    Zhang, F.3    Hinnebusch, A.G.4    Green, R.5
  • 38
    • 84953215880 scopus 로고    scopus 로고
    • Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP. Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation. bioRxiv. 2015;.
  • 39
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS, Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell. 2011 Nov;147(4):789–802. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3225288&tool=pmcentrez&rendertype=abstract doi: 10.1016/j.cell.2011.10.002 22056041
    • (2011) Cell , vol.147 , Issue.4 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 40
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: a test for translational selection
    • dos Reis M, Savva R, Wernisch L, Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Research. 2004 Jan;32(17):5036–44. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=521650&tool=pmcentrez&rendertype=abstract doi: 10.1093/nar/gkh834 15448185
    • (2004) Nucleic Acids Research , vol.32 , Issue.17 , pp. 5036-5044
    • dos Reis, M.1    Savva, R.2    Wernisch, L.3
  • 41
    • 84909607974 scopus 로고    scopus 로고
    • Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
    • Jan CH, Williams CC, Weissman JS, Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling. Science. 2014;. doi: 10.1126/science.1257521
    • (2014) Science
    • Jan, C.H.1    Williams, C.C.2    Weissman, J.S.3
  • 42
    • 84909606778 scopus 로고    scopus 로고
    • Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling
    • Williams CC, Jan CH, Weissman JS, Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling. Science. 2014;346 (6210). doi: 10.1126/science.1257522
    • (2014) Science , vol.346 , Issue.6210
    • Williams, C.C.1    Jan, C.H.2    Weissman, J.S.3
  • 43
    • 84930682682 scopus 로고    scopus 로고
    • Widespread Co-translational RNA Decay Reveals Ribosome Dynamics
    • Pelechano V, Wei W, Steinmetz L, Widespread Co-translational RNA Decay Reveals Ribosome Dynamics. Cell. 2015;161(6):1400–1412. Available from: http://linkinghub.elsevier.com/retrieve/pii/S0092867415005565 doi: 10.1016/j.cell.2015.05.008 26046441
    • (2015) Cell , vol.161 , Issue.6 , pp. 1400-1412
    • Pelechano, V.1    Wei, W.2    Steinmetz, L.3
  • 44
    • 84891816803 scopus 로고    scopus 로고
    • Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp
    • Charneski Ca, Hurst LD, Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp. Molecular Biology and Evolution. 2014;31(1):70–84. doi: 10.1093/molbev/mst169 24077849
    • (2014) Molecular Biology and Evolution , vol.31 , Issue.1 , pp. 70-84
    • Charneski, C.1    Hurst, L.D.2
  • 45
    • 84880672169 scopus 로고    scopus 로고
    • tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding
    • Rezgui VAN, Tyagi K, Ranjan N, Konevega AL, Mittelstaet J, Rodnina MV, et al. tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding. Proceedings of the National Academy of Sciences of the United States of America. 2013;110(30):12289–94. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3725067&tool=pmcentrez&rendertype=abstract doi: 10.1073/pnas.1300781110 23836657
    • (2013) Proceedings of the National Academy of Sciences of the United States of America , vol.110 , Issue.30 , pp. 12289-12294
    • Rezgui, V.A.N.1    Tyagi, K.2    Ranjan, N.3    Konevega, A.L.4    Mittelstaet, J.5    Rodnina, M.V.6
  • 46
    • 0015812565 scopus 로고
    • RNA and protein elongation rates in Saccharomyces cerevisiae
    • Lacroute F, RNA and protein elongation rates in Saccharomyces cerevisiae. Molecular & General genetics: MGG. 1973;125(4):319–327.
    • (1973) Molecular & General genetics: MGG , vol.125 , Issue.4 , pp. 319-327
    • Lacroute, F.1
  • 47
    • 84924567669 scopus 로고    scopus 로고
    • Codon Optimality Is a Major Determinant of mRNA Stability
    • Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, et al. Codon Optimality Is a Major Determinant of mRNA Stability. Cell. 2015;160(6):1111–1124. Available from: http://linkinghub.elsevier.com/retrieve/pii/S0092867415001956 doi: 10.1016/j.cell.2015.02.029 25768907
    • (2015) Cell , vol.160 , Issue.6 , pp. 1111-1124
    • Presnyak, V.1    Alhusaini, N.2    Chen, Y.H.3    Martin, S.4    Morris, N.5    Kline, N.6
  • 48
    • 84879345901 scopus 로고    scopus 로고
    • Rate-limiting steps in yeast protein translation
    • Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB, Rate-limiting steps in yeast protein translation. Cell. 2013 Jun;153(7):1589–601. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3694300&tool=pmcentrez&rendertype=abstract doi: 10.1016/j.cell.2013.05.049 23791185
    • (2013) Cell , vol.153 , Issue.7 , pp. 1589-1601
    • Shah, P.1    Ding, Y.2    Niemczyk, M.3    Kudla, G.4    Plotkin, J.B.5
  • 49
    • 84906235471 scopus 로고    scopus 로고
    • The effect of tRNA levels on decoding times of mRNA codons
    • Dana A, Tuller T, The effect of tRNA levels on decoding times of mRNA codons. Nucleic Acids Research. 2014 Jul;Available from: http://www.ncbi.nlm.nih.gov/pubmed/25056313 doi: 10.1093/nar/gku646
    • (2014) Nucleic Acids Research
    • Dana, A.1    Tuller, T.2


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