메뉴 건너뛰기




Volumn 24, Issue 12, 2014, Pages 2011-2021

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MESSENGER RNA; PROLINE; CODON; PROTEIN BINDING;

EID: 84913573216     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.175893.114     Document Type: Article
Times cited : (127)

References (72)
  • 1
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson SG, Kurland CG. 1990. Codon preferences in free-living microorganisms. Microbiol Rev 54: 198-210.
    • (1990) Microbiol Rev , vol.54 , pp. 198-210
    • Andersson, S.G.1    Kurland, C.G.2
  • 2
    • 84895531783 scopus 로고    scopus 로고
    • Evolution at two levels of gene expression in yeast
    • Artieri CG, Fraser HB. 2014. Evolution at two levels of gene expression in yeast. Genome Res 24: 411-421.
    • (2014) Genome Res , vol.24 , pp. 411-421
    • Artieri, C.G.1    Fraser, H.B.2
  • 4
    • 0020024572 scopus 로고
    • Codon selection in yeast
    • Bennetzen JL, Hall BD. 1982. Codon selection in yeast. J Biol Chem 257: 3026-3031.
    • (1982) J Biol Chem , vol.257 , pp. 3026-3031
    • Bennetzen, J.L.1    Hall, B.D.2
  • 5
    • 84856625798 scopus 로고    scopus 로고
    • High-resolution view of the yeast meiotic program revealed by ribosome profiling
    • Brar GA, Yassour M, Friedman N, Regev A, Ingolia NT, Weissman JS. 2012. High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335: 552-557.
    • (2012) Science , vol.335 , pp. 552-557
    • Brar, G.A.1    Yassour, M.2    Friedman, N.3    Regev, A.4    Ingolia, N.T.5    Weissman, J.S.6
  • 6
    • 77949481052 scopus 로고    scopus 로고
    • Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
    • Bullard JH, Purdom E, Hansen KD, Dudoit S. 2010. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11: 94.
    • (2010) BMC Bioinformatics , vol.11 , pp. 94
    • Bullard, J.H.1    Purdom, E.2    Hansen, K.D.3    Dudoit, S.4
  • 7
    • 84875465945 scopus 로고    scopus 로고
    • Positively charged residues are the major determinants of ribosomal velocity
    • Charneski CA, Hurst LD. 2013. Positively charged residues are the major determinants of ribosomal velocity. PLoS Biol 11: e1001508.
    • (2013) PLoS Biol , vol.11 , pp. e1001508
    • Charneski, C.A.1    Hurst, L.D.2
  • 8
    • 84891816803 scopus 로고    scopus 로고
    • Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp
    • Charneski CA, Hurst LD. 2014. Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp. Mol Biol Evol 31: 70-84.
    • (2014) Mol Biol Evol , vol.31 , pp. 70-84
    • Charneski, C.A.1    Hurst, L.D.2
  • 10
    • 84871921644 scopus 로고    scopus 로고
    • EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
    • Doerfel LK, Wohlgemuth I, Kothe C, Peske F, Urlaub H, Rodnina MV. 2013. EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339: 85-88.
    • (2013) Science , vol.339 , pp. 85-88
    • Doerfel, L.K.1    Wohlgemuth, I.2    Kothe, C.3    Peske, F.4    Urlaub, H.5    Rodnina, M.V.6
  • 11
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: A test for translational selection
    • dos Reis M, Savva R, Wernisch L. 2004. Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res 32: 5036-5044.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5036-5044
    • Dos Reis, M.1    Savva, R.2    Wernisch, L.3
  • 12
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • Duret L, Mouchiroud D. 1999. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila , and Arabidopsis. Proc Natl Acad Sci 96: 4482-4487.
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 13
    • 33845932593 scopus 로고    scopus 로고
    • Pro in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA
    • Pro in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA. J Biol Chem 281: 34258-34268.
    • (2006) J Biol Chem , vol.281 , pp. 34258-34268
    • Garza-Sánchez, F.1    Janssen, B.D.2    Hayes, C.S.3
  • 14
    • 79954456859 scopus 로고    scopus 로고
    • Determinants of translation efficiency and accuracy
    • Gingold H, Pilpel Y. 2011. Determinants of translation efficiency and accuracy. Mol Syst Biol 7: 481.
    • (2011) Mol Syst Biol , vol.7 , pp. 481
    • Gingold, H.1    Pilpel, Y.2
  • 15
    • 84886302057 scopus 로고    scopus 로고
    • Causes and effects of N-terminal codon bias in bacterial genes
    • Goodman DB, Church GM, Kosuri S. 2013. Causes and effects of N-terminal codon bias in bacterial genes. Science 342: 475-479.
    • (2013) Science , vol.342 , pp. 475-479
    • Goodman, D.B.1    Church, G.M.2    Kosuri, S.3
  • 18
    • 77955883388 scopus 로고    scopus 로고
    • Biases in Illumina transcriptome sequencing caused by random hexamer priming
    • Hansen KD, Brenner SE, Dudoit S. 2010. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 38: e131.
    • (2010) Nucleic Acids Res , vol.38 , pp. e131
    • Hansen, K.D.1    Brenner, S.E.2    Dudoit, S.3
  • 20
    • 77956024408 scopus 로고    scopus 로고
    • Genome-wide translational profiling by ribosome footprinting
    • Ingolia NT. 2010. Genome-wide translational profiling by ribosome footprinting. Methods Enzymol 470: 119-142.
    • (2010) Methods Enzymol , vol.470 , pp. 119-142
    • Ingolia, N.T.1
  • 21
    • 62549134121 scopus 로고    scopus 로고
    • Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS. 2009. Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 22
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS. 2011. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 24
    • 0034821884 scopus 로고    scopus 로고
    • Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
    • Kanaya S, Yamada Y, Kinouchi M, Kudo Y, Ikemura T. 2001. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. J Mol Evol 53: 290-298.
    • (2001) J Mol Evol , vol.53 , pp. 290-298
    • Kanaya, S.1    Yamada, Y.2    Kinouchi, M.3    Kudo, Y.4    Ikemura, T.5
  • 25
    • 0025141883 scopus 로고
    • The difference in the type of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate
    • Kato M, Nishikawa K, Uritani M, Miyazaki M, Takemura S. 1990. The difference in the type of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate. J Biochem 107: 242-247.
    • (1990) J Biochem , vol.107 , pp. 242-247
    • Kato, M.1    Nishikawa, K.2    Uritani, M.3    Miyazaki, M.4    Takemura, S.5
  • 27
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla G, Murray AW, Tollervey D, Plotkin JB. 2009. Coding-sequence determinants of gene expression in Escherichia coli. Science 324: 255-258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 28
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 29
    • 84900489620 scopus 로고    scopus 로고
    • Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
    • Lareau LF, Hite DH, Hogan GJ, Brown PO. 2014. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments. eLife 3: e01257.
    • (2014) ELife , vol.3 , pp. e01257
    • Lareau, L.F.1    Hite, D.H.2    Hogan, G.J.3    Brown, P.O.4
  • 30
    • 77951940273 scopus 로고    scopus 로고
    • Modeling non-uniformity in short-read rates in RNA-Seq data
    • Li J, Jiang H, Wong WH. 2010. Modeling non-uniformity in short-read rates in RNA-Seq data. Genome Biol 11: R50.
    • (2010) Genome Biol , vol.11 , pp. R50
    • Li, J.1    Jiang, H.2    Wong, W.H.3
  • 31
    • 84860231100 scopus 로고    scopus 로고
    • The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
    • Li GW, Oh E, Weissman JS. 2012. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484: 538-541.
    • (2012) Nature , vol.484 , pp. 538-541
    • Li, G.W.1    Oh, E.2    Weissman, J.S.3
  • 32
    • 54249096045 scopus 로고    scopus 로고
    • Electrostatics in the ribosomal tunnel modulate chain elongation rates
    • Lu J, Deutsch C. 2008. Electrostatics in the ribosomal tunnel modulate chain elongation rates. J Mol Biol 384: 73-86.
    • (2008) J Mol Biol , vol.384 , pp. 73-86
    • Lu, J.1    Deutsch, C.2
  • 33
    • 34547569922 scopus 로고    scopus 로고
    • Mapping the electrostatic potential within the ribosomal exit tunnel
    • Lu J, Kobertz WR, Deutsch C. 2007. Mapping the electrostatic potential within the ribosomal exit tunnel. J Mol Biol 371: 1378-1391.
    • (2007) J Mol Biol , vol.371 , pp. 1378-1391
    • Lu, J.1    Kobertz, W.R.2    Deutsch, C.3
  • 34
    • 84895525650 scopus 로고    scopus 로고
    • Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
    • McManus J, May G, Spealman P, Shteyman A. 2014. Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast. Genome Res 24: 422-430.
    • (2014) Genome Res , vol.24 , pp. 422-430
    • McManus, J.1    May, G.2    Spealman, P.3    Shteyman, A.4
  • 35
    • 37549003962 scopus 로고    scopus 로고
    • Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin
    • Muto H, Ito K. 2008. Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin. Biochem Biophys Res Commun 366: 1043-1047.
    • (2008) Biochem Biophys Res Commun , vol.366 , pp. 1043-1047
    • Muto, H.1    Ito, K.2
  • 36
    • 33646557329 scopus 로고    scopus 로고
    • A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
    • Namy O, Moran SJ, Stuart DI, Gilbert RJ, Brierley I. 2006. A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 441: 244-247.
    • (2006) Nature , vol.441 , pp. 244-247
    • Namy, O.1    Moran, S.J.2    Stuart, D.I.3    Gilbert, R.J.4    Brierley, I.5
  • 37
    • 0015216932 scopus 로고
    • The mechanism by which cycloheximide and related glutarimide antibiotics inhibit peptide synthesis on reticulocyte ribosomes
    • Obrig TG, Culp WJ, McKeehan WL, Hardesty B. 1971. The mechanism by which cycloheximide and related glutarimide antibiotics inhibit peptide synthesis on reticulocyte ribosomes. J Biol Chem 246: 174-181.
    • (1971) J Biol Chem , vol.246 , pp. 174-181
    • Obrig, T.G.1    Culp, W.J.2    McKeehan, W.L.3    Hardesty, B.4
  • 38
    • 84873325566 scopus 로고    scopus 로고
    • SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data
    • Ouyang Z, Snyder MP, Chang HY. 2013. SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data. Genome Res 23: 377-387.
    • (2013) Genome Res , vol.23 , pp. 377-387
    • Ouyang, Z.1    Snyder, M.P.2    Chang, H.Y.3
  • 40
    • 84873570699 scopus 로고    scopus 로고
    • Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
    • Pechmann S, Frydman J. 2013. Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding. Nat Struct Mol Biol 20: 237-243.
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 237-243
    • Pechmann, S.1    Frydman, J.2
  • 41
    • 0032736056 scopus 로고    scopus 로고
    • Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae
    • Percudani R, Ottonello S. 1999. Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae . Mol Biol Evol 16: 1752-1762.
    • (1999) Mol Biol Evol , vol.16 , pp. 1752-1762
    • Percudani, R.1    Ottonello, S.2
  • 42
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: The causes and consequences of codon bias
    • Plotkin JB, Kudla G. 2011. Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet 12: 32-42.
    • (2011) Nat Rev Genet , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 43
    • 84859219968 scopus 로고    scopus 로고
    • Balanced codon usage optimizes eukaryotic translational efficiency
    • Qian W, Yang JR, Pearson NM, Maclean C, Zhang J. 2012. Balanced codon usage optimizes eukaryotic translational efficiency. PLoS Genet 8: e1002603.
    • (2012) PLoS Genet , vol.8 , pp. e1002603
    • Qian, W.1    Yang, J.R.2    Pearson, N.M.3    Maclean, C.4    Zhang, J.5
  • 45
    • 84893351549 scopus 로고    scopus 로고
    • Genomewide probing of RNA structure reveals active unfolding of mRNA structures in vivo
    • Rouskin S, Zubradt M, Washietl S, Kellis M, Weissman JS. 2014. Genomewide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Nature 505: 701-705.
    • (2014) Nature , vol.505 , pp. 701-705
    • Rouskin, S.1    Zubradt, M.2    Washietl, S.3    Kellis, M.4    Weissman, J.S.5
  • 46
    • 0024344770 scopus 로고
    • The role of bases upstream of the Shine-Dalgarno region and in the coding sequence in the control of gene expression in Escherichia coli: Translation and stability of mRNAs in vivo
    • Schauder B, McCarthy JE. 1989. The role of bases upstream of the Shine-Dalgarno region and in the coding sequence in the control of gene expression in Escherichia coli: translation and stability of mRNAs in vivo. Gene 78: 59-72.
    • (1989) Gene , vol.78 , pp. 59-72
    • Schauder, B.1    McCarthy, J.E.2
  • 47
    • 34548052424 scopus 로고    scopus 로고
    • Translation matters: Protein synthesis defects in inherited disease
    • Scheper GC, van der Knaap MS, Proud CG. 2007. Translation matters: protein synthesis defects in inherited disease. Nat Rev Genet 8: 711-723.
    • (2007) Nat Rev Genet , vol.8 , pp. 711-723
    • Scheper, G.C.1    Van Der Knaap, M.S.2    Proud, C.G.3
  • 49
    • 84879345901 scopus 로고    scopus 로고
    • Rate-limiting steps in yeast protein translation
    • Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB. 2013. Rate-limiting steps in yeast protein translation. Cell 153: 1589-1601.
    • (2013) Cell , vol.153 , pp. 1589-1601
    • Shah, P.1    Ding, Y.2    Niemczyk, M.3    Kudla, G.4    Plotkin, J.B.5
  • 50
    • 0023650543 scopus 로고
    • The codon Adaptation Index: A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp PM, Li WH. 1987. The codon Adaptation Index: a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15: 1281-1295.
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 52
    • 78049245511 scopus 로고    scopus 로고
    • A comprehensive, quantitative, and genome-wide model of translation
    • Siwiak M, Zielenkiewicz P. 2010. A comprehensive, quantitative, and genome-wide model of translation. PLoS Comput Biol 6: e1000865.
    • (2010) PLoS Comput Biol , vol.6 , pp. e1000865
    • Siwiak, M.1    Zielenkiewicz, P.2
  • 53
    • 85052549687 scopus 로고    scopus 로고
    • A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
    • Srivastava S, Chen L. 2010. A two-parameter generalized Poisson model to improve the analysis of RNA-seq data. Nucleic Acids Res 38: e170.
    • (2010) Nucleic Acids Res , vol.38 , pp. e170
    • Srivastava, S.1    Chen, L.2
  • 54
    • 81755184408 scopus 로고    scopus 로고
    • Wobble base-pairing slows in vivo translation elongation in metazoans
    • Stadler M, Fire A. 2011. Wobble base-pairing slows in vivo translation elongation in metazoans. RNA 17: 2063-2073.
    • (2011) RNA , vol.17 , pp. 2063-2073
    • Stadler, M.1    Fire, A.2
  • 55
    • 84887278788 scopus 로고    scopus 로고
    • Conserved translatome remodeling in nematode species executing a shared developmental transition
    • Stadler M, Fire A. 2013. Conserved translatome remodeling in nematode species executing a shared developmental transition. PLoS Genet 9: e1003739.
    • (2013) PLoS Genet , vol.9 , pp. e1003739
    • Stadler, M.1    Fire, A.2
  • 56
    • 0028359705 scopus 로고
    • Codon usage in Caenorhabditis elegans: Delineation of translational selection and mutational biases
    • Stenico M, Lloyd AT, Sharp PM. 1994. Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases. Nucleic Acids Res 22: 2437-2446.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2437-2446
    • Stenico, M.1    Lloyd, A.T.2    Sharp, P.M.3
  • 58
    • 0023722029 scopus 로고
    • Codon choice and gene expression: Synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro
    • Thomas LK, Dix DB, Thompson RC. 1988. Codon choice and gene expression: synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro. Proc Natl Acad Sci 85: 4242-4246.
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 4242-4246
    • Thomas, L.K.1    Dix, D.B.2    Thompson, R.C.3
  • 60
    • 77649245858 scopus 로고    scopus 로고
    • Translation efficiency is determined by both codon bias and folding energy
    • Tuller T, Waldman YY, Kupiec M, Ruppin E. 2010b. Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci 107: 3645-3650.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 3645-3650
    • Tuller, T.1    Waldman, Y.Y.2    Kupiec, M.3    Ruppin, E.4
  • 62
    • 84871918588 scopus 로고    scopus 로고
    • Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
    • Ude S, Lassak J, Starosta AL, Kraxenberger T, Wilson DN, Jung K. 2013. Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339: 82-85.
    • (2013) Science , vol.339 , pp. 82-85
    • Ude, S.1    Lassak, J.2    Starosta, A.L.3    Kraxenberger, T.4    Wilson, D.N.5    Jung, K.6
  • 63
    • 0021764898 scopus 로고
    • Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains
    • Varenne S, Buc J, Lloubes R, Lazdunski C. 1984. Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. J Mol Biol 180: 549-576.
    • (1984) J Mol Biol , vol.180 , pp. 549-576
    • Varenne, S.1    Buc, J.2    Lloubes, R.3    Lazdunski, C.4
  • 64
    • 84877767258 scopus 로고    scopus 로고
    • Estimating selection on synonymous codon usage from noisy experimental data
    • Wallace EW, Airoldi EM, Drummond DA. 2013. Estimating selection on synonymous codon usage from noisy experimental data. Mol Biol Evol 30: 1438-1453.
    • (2013) Mol Biol Evol , vol.30 , pp. 1438-1453
    • Wallace, E.W.1    Airoldi, E.M.2    Drummond, D.A.3
  • 67
    • 57749116022 scopus 로고    scopus 로고
    • Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates
    • Wohlgemuth I, Brenner S, Beringer M, Rodnina MV. 2008. Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates. J Biol Chem 283: 32229-32235.
    • (2008) J Biol Chem , vol.283 , pp. 32229-32235
    • Wohlgemuth, I.1    Brenner, S.2    Beringer, M.3    Rodnina, M.V.4
  • 68
    • 84905375893 scopus 로고    scopus 로고
    • Codon-by-codon modulation of translational speed and accuracy via MRNA folding
    • Yang JR, Chen X, Zhang J. 2014. Codon-by-codon modulation of translational speed and accuracy via mRNA folding. PLoS Biol 12: e1001910.
    • (2014) PLoS Biol , vol.12 , pp. e1001910
    • Yang, J.R.1    Chen, X.2    Zhang, J.3
  • 70
    • 79960557820 scopus 로고    scopus 로고
    • Bias detection and correction in RNA-Sequencing data
    • Zheng W, Chung LM, Zhao H. 2011. Bias detection and correction in RNA-Sequencing data. BMC Bioinformatics 12: 290.
    • (2011) BMC Bioinformatics , vol.12 , pp. 290
    • Zheng, W.1    Chung, L.M.2    Zhao, H.3
  • 71
    • 84884598021 scopus 로고    scopus 로고
    • Loss of a conserved tRNA anticodon modification perturbs cellular signaling
    • Zinshteyn B, Gilbert WV. 2013. Loss of a conserved tRNA anticodon modification perturbs cellular signaling. PLoS Genet 9: e1003675.
    • (2013) PLoS Genet , vol.9 , pp. e1003675
    • Zinshteyn, B.1    Gilbert, W.V.2
  • 72
    • 84857770146 scopus 로고    scopus 로고
    • Strong association between mRNA folding strength and protein abundance in S. cerevisiae
    • Zur H, Tuller T. 2012. Strong association between mRNA folding strength and protein abundance in S. cerevisiae. EMBO Rep 13: 272-277.
    • (2012) EMBO Rep , vol.13 , pp. 272-277
    • Zur, H.1    Tuller, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.