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Volumn 67, Issue 6, 2017, Pages 1013-1025.e9

Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response

Author keywords

apoptosis; cell cycle; DNA damage; MYC; p53; transcriptome

Indexed keywords

MYC PROTEIN; PROTEIN P53; TRANSCRIPTOME; MESSENGER RNA; MYC PROTEIN, HUMAN; PROTEIN BINDING; TP53 PROTEIN, HUMAN;

EID: 85028503624     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2017.07.028     Document Type: Article
Times cited : (56)

References (66)
  • 1
    • 84940502214 scopus 로고    scopus 로고
    • Predicting effective microRNA target sites in mammalian mRNAs
    • Agarwal, V., Bell, G.W., Nam, J.-W., Bartel, D.P., Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4, 2015, e05005.
    • (2015) eLife , vol.4 , pp. e05005
    • Agarwal, V.1    Bell, G.W.2    Nam, J.-W.3    Bartel, D.P.4
  • 4
    • 42949171936 scopus 로고    scopus 로고
    • Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage
    • Batchelor, E., Mock, C.S., Bhan, I., Loewer, A., Lahav, G., Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage. Mol. Cell 30 (2008), 277–289.
    • (2008) Mol. Cell , vol.30 , pp. 277-289
    • Batchelor, E.1    Mock, C.S.2    Bhan, I.3    Loewer, A.4    Lahav, G.5
  • 6
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: a flexible trimmer for Illumina sequence data
    • Bolger, A.M., Lohse, M., Usadel, B., Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (2014), 2114–2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 7
    • 84982950001 scopus 로고    scopus 로고
    • Local and global regulation of transcription initiation in bacteria
    • Browning, D.F., Busby, S.J.W., Local and global regulation of transcription initiation in bacteria. Nat. Rev. Microbiol. 14 (2016), 638–650.
    • (2016) Nat. Rev. Microbiol. , vol.14 , pp. 638-650
    • Browning, D.F.1    Busby, S.J.W.2
  • 8
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp, T.R., Bernards, R., Agami, R., A system for stable expression of short interfering RNAs in mammalian cells. Science 296 (2002), 550–553.
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 9
    • 0033611568 scopus 로고    scopus 로고
    • p53 represses ribosomal gene transcription
    • Budde, A., Grummt, I., p53 represses ribosomal gene transcription. Oncogene 18 (1999), 1119–1124.
    • (1999) Oncogene , vol.18 , pp. 1119-1124
    • Budde, A.1    Grummt, I.2
  • 10
    • 84888877924 scopus 로고    scopus 로고
    • Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
    • Buenrostro, J.D., Giresi, P.G., Zaba, L.C., Chang, H.Y., Greenleaf, W.J., Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 10 (2013), 1213–1218.
    • (2013) Nat. Methods , vol.10 , pp. 1213-1218
    • Buenrostro, J.D.1    Giresi, P.G.2    Zaba, L.C.3    Chang, H.Y.4    Greenleaf, W.J.5
  • 11
    • 84949212255 scopus 로고    scopus 로고
    • ATAC-seq: a method for assaying chromatin accessibility genome-wide
    • Buenrostro, J.D., Wu, B., Chang, H.Y., Greenleaf, W.J., ATAC-seq: a method for assaying chromatin accessibility genome-wide. Curr. Protoc. Mol. Biol. 109 (2015), 21.29.1–21.29.9.
    • (2015) Curr. Protoc. Mol. Biol. , vol.109 , pp. 21.29.1-21.29.9
    • Buenrostro, J.D.1    Wu, B.2    Chang, H.Y.3    Greenleaf, W.J.4
  • 13
    • 84873351389 scopus 로고    scopus 로고
    • DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing
    • Chen, K., Xi, Y., Pan, X., Li, Z., Kaestner, K., Tyler, J., Dent, S., He, X., Li, W., DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing. Genome Res. 23 (2013), 341–351.
    • (2013) Genome Res. , vol.23 , pp. 341-351
    • Chen, K.1    Xi, Y.2    Pan, X.3    Li, Z.4    Kaestner, K.5    Tyler, J.6    Dent, S.7    He, X.8    Li, W.9
  • 22
    • 33749249590 scopus 로고    scopus 로고
    • NF-kappaB activation by double-strand breaks
    • Habraken, Y., Piette, J., NF-kappaB activation by double-strand breaks. Biochem. Pharmacol. 72 (2006), 1132–1141.
    • (2006) Biochem. Pharmacol. , vol.72 , pp. 1132-1141
    • Habraken, Y.1    Piette, J.2
  • 23
    • 44349089776 scopus 로고    scopus 로고
    • Multiple mechanisms contribute to inhibit transcription in response to DNA damage
    • Heine, G.F., Horwitz, A.A., Parvin, J.D., Multiple mechanisms contribute to inhibit transcription in response to DNA damage. J. Biol. Chem. 283 (2008), 9555–9561.
    • (2008) J. Biol. Chem. , vol.283 , pp. 9555-9561
    • Heine, G.F.1    Horwitz, A.A.2    Parvin, J.D.3
  • 24
    • 84934275896 scopus 로고    scopus 로고
    • Proteostasis control by the unfolded protein response
    • Hetz, C., Chevet, E., Oakes, S.A., Proteostasis control by the unfolded protein response. Nat. Cell Biol. 17 (2015), 829–838.
    • (2015) Nat. Cell Biol. , vol.17 , pp. 829-838
    • Hetz, C.1    Chevet, E.2    Oakes, S.A.3
  • 25
    • 23844476499 scopus 로고    scopus 로고
    • p53-Dependent transcriptional repression of c-myc is required for G1 cell cycle arrest
    • Ho, J.S.L., Ma, W., Mao, D.Y.L., Benchimol, S., p53-Dependent transcriptional repression of c-myc is required for G1 cell cycle arrest. Mol. Cell. Biol. 25 (2005), 7423–7431.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 7423-7431
    • Ho, J.S.L.1    Ma, W.2    Mao, D.Y.L.3    Benchimol, S.4
  • 26
    • 0642365202 scopus 로고    scopus 로고
    • Efficient labeling of fission yeast Schizosaccharomyces pombe with thymidine and BUdR
    • Hodson, J.A., Bailis, J.M., Forsburg, S.L., Efficient labeling of fission yeast Schizosaccharomyces pombe with thymidine and BUdR. Nucleic Acids Res., 31, 2003, e134.
    • (2003) Nucleic Acids Res. , vol.31 , pp. e134
    • Hodson, J.A.1    Bailis, J.M.2    Forsburg, S.L.3
  • 27
    • 54949149565 scopus 로고    scopus 로고
    • Apoptotic signaling by c-MYC
    • Hoffman, B., Liebermann, D.A., Apoptotic signaling by c-MYC. Oncogene 27 (2008), 6462–6472.
    • (2008) Oncogene , vol.27 , pp. 6462-6472
    • Hoffman, B.1    Liebermann, D.A.2
  • 29
    • 0040298568 scopus 로고    scopus 로고
    • Caspase-3 is required for DNA fragmentation and morphological changes associated with apoptosis
    • Jänicke, R.U., Sprengart, M.L., Wati, M.R., Porter, A.G., Caspase-3 is required for DNA fragmentation and morphological changes associated with apoptosis. J. Biol. Chem. 273 (1998), 9357–9360.
    • (1998) J. Biol. Chem. , vol.273 , pp. 9357-9360
    • Jänicke, R.U.1    Sprengart, M.L.2    Wati, M.R.3    Porter, A.G.4
  • 30
    • 80054789799 scopus 로고    scopus 로고
    • Cell-type independent MYC target genes reveal a primordial signature involved in biomass accumulation
    • Ji, H., Wu, G., Zhan, X., Nolan, A., Koh, C., De Marzo, A., Doan, H.M., Fan, J., Cheadle, C., Fallahi, M., et al. Cell-type independent MYC target genes reveal a primordial signature involved in biomass accumulation. PLoS ONE, 6, 2011, e26057.
    • (2011) PLoS ONE , vol.6 , pp. e26057
    • Ji, H.1    Wu, G.2    Zhan, X.3    Nolan, A.4    Koh, C.5    De Marzo, A.6    Doan, H.M.7    Fan, J.8    Cheadle, C.9    Fallahi, M.10
  • 31
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., Salzberg, S.L., TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, 2013, R36.
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 34
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357–359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 35
    • 52149094807 scopus 로고    scopus 로고
    • How the c-myc promoter works and why it sometimes does not
    • Levens, D., How the c-myc promoter works and why it sometimes does not. J. Natl. Cancer Inst. Monogr. 2008 (2008), 41–43.
    • (2008) J. Natl. Cancer Inst. Monogr. , vol.2008 , pp. 41-43
    • Levens, D.1
  • 36
    • 84887191036 scopus 로고    scopus 로고
    • Cellular MYCro economics: balancing MYC function with MYC expression
    • Levens, D., Cellular MYCro economics: balancing MYC function with MYC expression. Cold Spring Harb. Perspect. Med., 3, 2013, a014233.
    • (2013) Cold Spring Harb. Perspect. Med. , vol.3 , pp. a014233
    • Levens, D.1
  • 37
    • 70349442548 scopus 로고    scopus 로고
    • The first 30 years of p53: growing ever more complex
    • Levine, A.J., Oren, M., The first 30 years of p53: growing ever more complex. Nat. Rev. Cancer 9 (2009), 749–758.
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 749-758
    • Levine, A.J.1    Oren, M.2
  • 38
    • 0027420554 scopus 로고
    • Complementation by wild-type p53 of interleukin-6 effects on M1 cells: induction of cell cycle exit and cooperativity with c-myc suppression
    • Levy, N., Yonish-Rouach, E., Oren, M., Kimchi, A., Complementation by wild-type p53 of interleukin-6 effects on M1 cells: induction of cell cycle exit and cooperativity with c-myc suppression. Mol. Cell. Biol. 13 (1993), 7942–7952.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 7942-7952
    • Levy, N.1    Yonish-Rouach, E.2    Oren, M.3    Kimchi, A.4
  • 39
    • 84862777719 scopus 로고    scopus 로고
    • Distinct regulatory mechanisms and functions for p53-activated and p53-repressed DNA damage response genes in embryonic stem cells
    • Li, M., He, Y., Dubois, W., Wu, X., Shi, J., Huang, J., Distinct regulatory mechanisms and functions for p53-activated and p53-repressed DNA damage response genes in embryonic stem cells. Mol. Cell 46 (2012), 30–42.
    • (2012) Mol. Cell , vol.46 , pp. 30-42
    • Li, M.1    He, Y.2    Dubois, W.3    Wu, X.4    Shi, J.5    Huang, J.6
  • 50
    • 84962676782 scopus 로고    scopus 로고
    • p53 Pulses Diversify Target Gene Expression Dynamics in an mRNA Half-Life-Dependent Manner and Delineate Co-regulated Target Gene Subnetworks
    • Porter, J.R., Fisher, B.E., Batchelor, E., p53 Pulses Diversify Target Gene Expression Dynamics in an mRNA Half-Life-Dependent Manner and Delineate Co-regulated Target Gene Subnetworks. Cell Syst. 2 (2016), 272–282.
    • (2016) Cell Syst. , vol.2 , pp. 272-282
    • Porter, J.R.1    Fisher, B.E.2    Batchelor, E.3
  • 51
    • 33646589650 scopus 로고    scopus 로고
    • Cockayne syndrome B protein regulates the transcriptional program after UV irradiation
    • Proietti-De-Santis, L., Drané, P., Egly, J.-M., Cockayne syndrome B protein regulates the transcriptional program after UV irradiation. EMBO J. 25 (2006), 1915–1923.
    • (2006) EMBO J. , vol.25 , pp. 1915-1923
    • Proietti-De-Santis, L.1    Drané, P.2    Egly, J.-M.3
  • 56
    • 0037126303 scopus 로고    scopus 로고
    • Myc suppression of the p21(Cip1) Cdk inhibitor influences the outcome of the p53 response to DNA damage
    • Seoane, J., Le, H.-V., Massagué, J., Myc suppression of the p21(Cip1) Cdk inhibitor influences the outcome of the p53 response to DNA damage. Nature 419 (2002), 729–734.
    • (2002) Nature , vol.419 , pp. 729-734
    • Seoane, J.1    Le, H.-V.2    Massagué, J.3
  • 57
    • 0036176452 scopus 로고    scopus 로고
    • Overexpression of c-Myc alters G(1)/S arrest following ionizing radiation
    • Sheen, J.-H., Dickson, R.B., Overexpression of c-Myc alters G(1)/S arrest following ionizing radiation. Mol. Cell. Biol. 22 (2002), 1819–1833.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 1819-1833
    • Sheen, J.-H.1    Dickson, R.B.2
  • 62
    • 55249084500 scopus 로고    scopus 로고
    • Translational control of c-MYC by rapamycin promotes terminal myeloid differentiation
    • Wall, M., Poortinga, G., Hannan, K.M., Pearson, R.B., Hannan, R.D., McArthur, G.A., Translational control of c-MYC by rapamycin promotes terminal myeloid differentiation. Blood 112 (2008), 2305–2317.
    • (2008) Blood , vol.112 , pp. 2305-2317
    • Wall, M.1    Poortinga, G.2    Hannan, K.M.3    Pearson, R.B.4    Hannan, R.D.5    McArthur, G.A.6
  • 63
    • 82255173966 scopus 로고    scopus 로고
    • The unfolded protein response: from stress pathway to homeostatic regulation
    • Walter, P., Ron, D., The unfolded protein response: from stress pathway to homeostatic regulation. Science 334 (2011), 1081–1086.
    • (2011) Science , vol.334 , pp. 1081-1086
    • Walter, P.1    Ron, D.2
  • 64
    • 0033867975 scopus 로고    scopus 로고
    • Repression of RNA polymerase I transcription by the tumor suppressor p53
    • Zhai, W., Comai, L., Repression of RNA polymerase I transcription by the tumor suppressor p53. Mol. Cell. Biol. 20 (2000), 5930–5938.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 5930-5938
    • Zhai, W.1    Comai, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.