-
1
-
-
78649773164
-
Rapid, low-input, lowbias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey, A.A., Morrison, H.G., Asan, Xun, X., Kitzman, J.O., Turner, E.H., Stackhouse, B., MacKenzie, A.P., Caruccio, N.C., Zhang, X., and Shendure, J. 2010. Rapid, low-input, lowbias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 11:R119.
-
(2010)
Genome Biol
, vol.11
-
-
Adey, A.A.1
Morrison, H.G.2
Asan, X.X.3
Kitzman, J.O.4
Turner, E.H.5
Stackhouse, B.6
MacKenzie, A.P.7
Caruccio, N.C.8
Zhang, X.9
Shendure, J.10
-
2
-
-
79960563344
-
Determinants and dynamics of genome accessibility
-
Bell, O., Tiwari, V.K., Thomä, N.H., and Schübeler, D. 2011. Determinants and dynamics of genome accessibility. Nat. Rev. Genet. 12:554-564.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 554-564
-
-
Bell, O.1
Tiwari, V.K.2
Thomä, N.H.3
Schübeler, D.4
-
3
-
-
84888877924
-
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin DNAbinding proteins and nucleosome position
-
Buenrostro, J.D., Giresi, P.G., Zaba, L.C., Chang, H.Y., and Greenleaf, W.J. 2013. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNAbinding proteins and nucleosome position. Nat. Methods 10:1213-1218.
-
(2013)
Nat. Methods
, vol.10
, pp. 1213-1218
-
-
Buenrostro, J.D.1
Giresi, P.G.2
Zaba, L.C.3
Chang, H.Y.4
Greenleaf, W.J.5
-
4
-
-
84892814234
-
Chromatin modifiers and remodellers: Regulators of cellular differentiation
-
Chen, T. and Dent, S.Y.R. 2014. Chromatin modifiers and remodellers: Regulators of cellular differentiation. Nat. Rev. Genet. 15:93-106.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 93-106
-
-
Chen, T.1
Dent, S.Y.R.2
-
5
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Consortium, T.E.P. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Consortium, T.E.P.1
-
7
-
-
0023899769
-
Nuclease hypersensitive sites in chromatin
-
Gross, D.S. and Garrard, W.T. 1988. Nuclease hypersensitive sites in chromatin. Annu. Rev. Biochem. 57:159-197.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 159-197
-
-
Gross, D.S.1
Garrard, W.T.2
-
8
-
-
0016221697
-
Chromatin structure: A repeating unit of histones and DNA
-
Kornberg, R.D. 1974. Chromatin structure: A repeating unit of histones and DNA. Science 184:868-871.
-
(1974)
Science
, vol.184
, pp. 868-871
-
-
Kornberg, R.D.1
-
9
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. 2007. Chromatin modifications and their function. Cell 128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
10
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt, S.G., Marinov, G.K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B.E., Bickel, P., Brown, J.B., Cayting, P., Chen, Y., DeSalvo, G., Epstein, C., Fisher-Aylor, K.I., Euskirchen, G., Gerstein, M., Gertz, J., Hartemink, A.J., Hoffman, M.M., Iyer, V.R., Jung, Y.L., Karmakar, S., Kellis, M., Kharchenko, P.V., Li, Q., Liu, T., Liu, X.S., Ma, L., Milosavljevic, A., Myers, R.M., Park, P.J., Pazin, M.J., Perry, M.D., Raha, D., Reddy, T.E., Rozowsky, J., Shoresh, N., Sidow, A., Slattery, M., Stamatoyannopoulos, J.A., Tolstorukov, M.Y., White, K.P., Xi, S., Farnham, P.J., Lieb, J.D., Wold, B.J., and Snyder, M. 2012. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 22:1813-1831.
-
(2012)
Genome Res
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
DeSalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
Gerstein, M.16
Gertz, J.17
Hartemink, A.J.18
Hoffman, M.M.19
Iyer, V.R.20
Jung, Y.L.21
Karmakar, S.22
Kellis, M.23
Kharchenko, P.V.24
Li, Q.25
Liu, T.26
Liu, X.S.27
Ma, L.28
Milosavljevic, A.29
Myers, R.M.30
Park, P.J.31
Pazin, M.J.32
Perry, M.D.33
Raha, D.34
Reddy, T.E.35
Rozowsky, J.36
Shoresh, N.37
Sidow, A.38
Slattery, M.39
Stamatoyannopoulos, J.A.40
Tolstorukov, M.Y.41
White, K.P.42
Xi, S.43
Farnham, P.J.44
Lieb, J.D.45
Wold, B.J.46
Snyder, M.47
more..
-
11
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
Neph, S., Vierstra, J., Stergachis, A.B., Reynolds, A.P., Haugen, E., Vernot, B., Thurman, R.E., John, S., Sandstrom, R., Johnson, A.K., Maurano, M.T., Humbert, R., Rynes, E., Wang, H., Vong, S., Lee, K., Bates, D., Diegel, M., Roach, V., Dunn, D., Neri, J., Schafer, A., Hansen, R.S., Kutyavin, T., Giste, E., Weaver, M., Canfield, T., Sabo, P., Zhang, M., Balasundaram, G., Byron, R., MacCoss, M.J., Akey, J.M., Bender, M.A., Groudine, M., Kaul, R., and Stamatoyannopoulos, J.A. 2012. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 489:83-90.
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
Vierstra, J.2
Stergachis, A.B.3
Reynolds, A.P.4
Haugen, E.5
Vernot, B.6
Thurman, R.E.7
John, S.8
Sandstrom, R.9
Johnson, A.K.10
Maurano, M.T.11
Humbert, R.12
Rynes, E.13
Wang, H.14
Vong, S.15
Lee, K.16
Bates, D.17
Diegel, M.18
Roach, V.19
Dunn, D.20
Neri, J.21
Schafer, A.22
Hansen, R.S.23
Kutyavin, T.24
Giste, E.25
Weaver, M.26
Canfield, T.27
Sabo, P.28
Zhang, M.29
Balasundaram, G.30
Byron, R.31
MacCoss, M.J.32
Akey, J.M.33
Bender, M.A.34
Groudine, M.35
Kaul, R.36
Stamatoyannopoulos, J.A.37
more..
-
13
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn, J.L. and Chang, H.Y. 2012. Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 81:145-166.
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
14
-
-
77956276383
-
DNase-seq: A high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
-
pdb.prot5384
-
Song, L. and Crawford, G.E. 2010. DNase-seq: A high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells. Cold Spring Harbor Protoc. 2010:pdb.prot5384.
-
(2010)
Cold Spring Harbor Protoc
-
-
Song, L.1
Crawford, G.E.2
-
15
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman, R.E., Rynes, E., Humbert, R., Vierstra, J., Maurano, M.T., Haugen, E., Sheffield, N.C., Stergachis, A.B., Wang, H., Vernot, B., Garg, K., John, S., Sandstrom, R., Bates, D., Boatman, L., Canfield, T.K., Diegel, M., Dunn, D., Ebersol, A.K., Frum, T., Giste, E., Johnson, A.K., Johnson, E.M., Kutyavin, T., Lajoie, B., Lee, B.K., Lee, K., London, D., Lotakis, D., Neph, S., Neri, F., Nguyen, E.D., Qu, H., Reynolds, A.P., Roach, V., Safi, A., Sanchez, M.E., Sanyal, A., Shafer, A., Simon, J.M., Song, L., Vong, S., Weaver, M., Yan, Y., Zhang, Z., Zhang, Z., Lenhard, B., Tewari, M., Dorschner, M.O., Hansen, R.S., Navas, P.A., Stamatoyannopoulos, G., Iyer, V.R., Lieb, J.D., Sunyaev, S.R., Akey, J.M., Sabo, P.J., Kaul, R., Furey, T.S., Dekker, J., Crawford, G.E., and Stamatoyannopoulos, J.A. 2012. The accessible chromatin landscape of the human genome. Nature 489:75-82.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
Garg, K.11
John, S.12
Sandstrom, R.13
Bates, D.14
Boatman, L.15
Canfield, T.K.16
Diegel, M.17
Dunn, D.18
Ebersol, A.K.19
Frum, T.20
Giste, E.21
Johnson, A.K.22
Johnson, E.M.23
Kutyavin, T.24
Lajoie, B.25
Lee, B.K.26
Lee, K.27
London, D.28
Lotakis, D.29
Neph, S.30
Neri, F.31
Nguyen, E.D.32
Qu, H.33
Reynolds, A.P.34
Roach, V.35
Safi, A.36
Sanchez, M.E.37
Sanyal, A.38
Shafer, A.39
Simon, J.M.40
Song, L.41
Vong, S.42
Weaver, M.43
Yan, Y.44
Zhang, Z.45
Zhang, Z.46
Lenhard, B.47
Tewari, M.48
Dorschner, M.O.49
Hansen, R.S.50
Navas, P.A.51
Stamatoyannopoulos, G.52
Iyer, V.R.53
Lieb, J.D.54
Sunyaev, S.R.55
Akey, J.M.56
Sabo, P.J.57
Kaul, R.58
Furey, T.S.59
Dekker, J.60
Crawford, G.E.61
Stamatoyannopoulos, J.A.62
more..
-
16
-
-
79959557189
-
Determinants of nucleosome organization in primary human cells
-
Valouev, A., Johnson, S.M., Boyd, S.D., Smith, C.L., Fire, A.Z., and Sidow, A. 2011. Determinants of nucleosome organization in primary human cells. Nature 474:516-520.
-
(2011)
Nature
, vol.474
, pp. 516-520
-
-
Valouev, A.1
Johnson, S.M.2
Boyd, S.D.3
Smith, C.L.4
Fire, A.Z.5
Sidow, A.6
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