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Volumn 8, Issue , 2017, Pages

A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury

Author keywords

[No Author keywords available]

Indexed keywords

ANATOMY; CELLS AND CELL COMPONENTS; DATA SET; DRUG; EXPERIMENTAL STUDY; GENE; GENETIC ANALYSIS; GENOMICS; HISTOPATHOLOGY; INJURY; PREDICTION; PROBABILITY; TOXICITY;

EID: 85021759690     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15932     Document Type: Article
Times cited : (84)

References (79)
  • 1
    • 39349118236 scopus 로고    scopus 로고
    • Toxicology. Transforming environmental health protection
    • Collins, F. S., Gray, G. M. & Bucher, J. R. Toxicology. Transforming environmental health protection. Science 319, 906-907 (2008).
    • (2008) Science , vol.319 , pp. 906-907
    • Collins, F.S.1    Gray, G.M.2    Bucher, J.R.3
  • 2
    • 79952055751 scopus 로고    scopus 로고
    • Advancing regulatory science
    • Hamburg, M. A. Advancing regulatory science. Science 331, 987 (2011).
    • (2011) Science , vol.331 , pp. 987
    • Hamburg, M.A.1
  • 3
    • 84966343999 scopus 로고    scopus 로고
    • Foretelling toxicity: FDA researchers work to predict risk of liver injury from drugs
    • Willyard, C. Foretelling toxicity: FDA researchers work to predict risk of liver injury from drugs. Nat. Med. 22, 450-451 (2016).
    • (2016) Nat. Med. , vol.22 , pp. 450-451
    • Willyard, C.1
  • 4
    • 0033771951 scopus 로고    scopus 로고
    • Concordance of the toxicity of pharmaceuticals in humans and in animals
    • Olson, H. et al. Concordance of the toxicity of pharmaceuticals in humans and in animals. Regul. Toxicol. Pharmacol. 32, 56-67 (2000).
    • (2000) Regul. Toxicol. Pharmacol. , vol.32 , pp. 56-67
    • Olson, H.1
  • 5
    • 84890499263 scopus 로고    scopus 로고
    • Idiosyncratic drug-induced liver injury: An update on the 2007 overview
    • Hussaini, S. H. & Farrington, E. A. Idiosyncratic drug-induced liver injury: an update on the 2007 overview. Expert Opin. Drug Saf. 13, 67-81 (2014).
    • (2014) Expert Opin. Drug Saf. , vol.13 , pp. 67-81
    • Hussaini, S.H.1    Farrington, E.A.2
  • 6
    • 84988731993 scopus 로고    scopus 로고
    • Key challenges and opportunities associated with the use of in vitro models to detect human DILI: Integrated risk assessment and mitigation plans
    • Atienzar, F. A. et al. Key challenges and opportunities associated with the use of in vitro models to detect human DILI: integrated risk assessment and mitigation plans. BioMed Res. Int. 2016, 9737920 (2016).
    • (2016) BioMed Res. Int. , vol.2016 , pp. 9737920
    • Atienzar, F.A.1
  • 7
    • 84872243783 scopus 로고    scopus 로고
    • Systems pharmacology to predict drug toxicity: Integration across levels of biological organization
    • Bai, J. P. & Abernethy, D. R. Systems pharmacology to predict drug toxicity: integration across levels of biological organization. Annu. Rev. Pharmacol. Toxicol. 53, 451-473 (2013).
    • (2013) Annu. Rev. Pharmacol. Toxicol. , vol.53 , pp. 451-473
    • Bai, J.P.1    Abernethy, D.R.2
  • 8
    • 84896366331 scopus 로고    scopus 로고
    • Systems toxicology: From basic research to risk assessment
    • Sturla, S. J. et al. Systems toxicology: from basic research to risk assessment. Chem. Res. Toxicol. 27, 314-329 (2014).
    • (2014) Chem. Res. Toxicol. , vol.27 , pp. 314-329
    • Sturla, S.J.1
  • 9
    • 84905269622 scopus 로고    scopus 로고
    • A framework for the next generation of risk science
    • Krewski, D. et al. A framework for the next generation of risk science. Environ. Health Perspect. 122, 796-805 (2014).
    • (2014) Environ. Health Perspect. , vol.122 , pp. 796-805
    • Krewski, D.1
  • 10
    • 84937759207 scopus 로고    scopus 로고
    • Developing tools for defining and establishing pathways of toxicity
    • Andersen, M. E., McMullen, P. D. & Krewski, D. Developing tools for defining and establishing pathways of toxicity. Arch. Toxicol. 89, 809-812 (2015).
    • (2015) Arch. Toxicol. , vol.89 , pp. 809-812
    • Andersen, M.E.1    McMullen, P.D.2    Krewski, D.3
  • 11
    • 84948756624 scopus 로고    scopus 로고
    • Toward the replacement of animal experiments through the bioinformatics-driven analysis of 'omics' data from human cell cultures
    • Grafström, R. C. et al. Toward the replacement of animal experiments through the bioinformatics-driven analysis of 'omics' data from human cell cultures. Altern. Lab Anim. 43, 325-332 (2015).
    • (2015) Altern. Lab Anim. , vol.43 , pp. 325-332
    • Grafström, R.C.1
  • 12
    • 41149111051 scopus 로고    scopus 로고
    • The liver pharmacological and xenobiotic gene response repertoire
    • Natsoulis, G. et al. The liver pharmacological and xenobiotic gene response repertoire. Mol. Syst. Biol. 4, 175 (2008).
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 175
    • Natsoulis, G.1
  • 13
    • 84869462906 scopus 로고    scopus 로고
    • A decade of toxicogenomic research and its contribution to toxicological science
    • Chen, M., Zhang, M., Borlak, J. & Tong, W. A decade of toxicogenomic research and its contribution to toxicological science. Toxicol. Sci. 130, 217-228 (2012).
    • (2012) Toxicol. Sci. , vol.130 , pp. 217-228
    • Chen, M.1    Zhang, M.2    Borlak, J.3    Tong, W.4
  • 14
    • 84904812772 scopus 로고    scopus 로고
    • Genomic models of short-term exposure accurately predict long-term chemical carcinogenicity and identify putative mechanisms of action
    • Gusenleitner, D. et al. Genomic models of short-term exposure accurately predict long-term chemical carcinogenicity and identify putative mechanisms of action. PLoS ONE 9, e102579 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e102579
    • Gusenleitner, D.1
  • 15
    • 84901981682 scopus 로고    scopus 로고
    • Cancer biology, toxicology and alternative methods development go hand-in-hand
    • Kohonen, P. et al. Cancer biology, toxicology and alternative methods development go hand-in-hand. Basic Clin. Pharmacol. Toxicol. 115, 50-58 (2014).
    • (2014) Basic Clin. Pharmacol. Toxicol. , vol.115 , pp. 50-58
    • Kohonen, P.1
  • 16
    • 84941087170 scopus 로고    scopus 로고
    • Open TG-GATEs: A large-scale toxicogenomics database
    • Igarashi, Y. et al. Open TG-GATEs: a large-scale toxicogenomics database. Nucleic Acids Res. 43, D921-D927 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D921-D927
    • Igarashi, Y.1
  • 17
    • 48849117849 scopus 로고    scopus 로고
    • Dose response considerations in risk assessment-an overview of recent ILSI activities
    • Holsapple, M. P. & Wallace, K. B. Dose response considerations in risk assessment-an overview of recent ILSI activities. Toxicol. Lett. 180, 85-92 (2008).
    • (2008) Toxicol. Lett. , vol.180 , pp. 85-92
    • Holsapple, M.P.1    Wallace, K.B.2
  • 18
    • 84887916009 scopus 로고    scopus 로고
    • Incorporating new technologies into toxicity testing and risk assessment: Moving from 21st century vision to a data-driven framework
    • Thomas, R. S. et al. Incorporating new technologies into toxicity testing and risk assessment: moving from 21st century vision to a data-driven framework. Toxicol. Sci. 136, 4-18 (2013).
    • (2013) Toxicol. Sci. , vol.136 , pp. 4-18
    • Thomas, R.S.1
  • 19
    • 84946055501 scopus 로고    scopus 로고
    • Lessons from toxicology: Developing a 21st-century paradigm for medical research
    • Langley, G. et al. Lessons from toxicology: developing a 21st-century paradigm for medical research. Environ Health Perspect. 123, A268-A272 (2015).
    • (2015) Environ Health Perspect. , vol.123 , pp. A268-A272
    • Langley, G.1
  • 20
    • 84937688579 scopus 로고    scopus 로고
    • Adverse outcome pathways and drug-induced liver injury testing
    • Vinken, M. Adverse outcome pathways and drug-induced liver injury testing. Chem. Res. Toxicol. 28, 1391-1397 (2015).
    • (2015) Chem. Res. Toxicol. , vol.28 , pp. 1391-1397
    • Vinken, M.1
  • 21
    • 84902166194 scopus 로고    scopus 로고
    • Phenotypic screening of the ToxCast chemical library to classify toxic and therapeutic mechanisms
    • Kleinstreuer, N. C. et al. Phenotypic screening of the ToxCast chemical library to classify toxic and therapeutic mechanisms. Nat. Biotechnol. 32, 583-591 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 583-591
    • Kleinstreuer, N.C.1
  • 22
    • 84940727150 scopus 로고    scopus 로고
    • SEURAT: Safety evaluation ultimately replacing animal testing-recommendations for future research in the field of predictive toxicology
    • Daston, G. et al. SEURAT: safety evaluation ultimately replacing animal testing-recommendations for future research in the field of predictive toxicology. Arch. Toxicol. 89, 15-23 (2015).
    • (2015) Arch. Toxicol. , vol.89 , pp. 15-23
    • Daston, G.1
  • 23
    • 84955449812 scopus 로고    scopus 로고
    • Modelling the Tox21 10 K chemical profiles for in vivo toxicity prediction and mechanism characterization
    • Huang, R. et al. Modelling the Tox21 10 K chemical profiles for in vivo toxicity prediction and mechanism characterization. Nat. Commun. 7, 10425 (2016).
    • (2016) Nat. Commun. , vol.7 , pp. 10425
    • Huang, R.1
  • 24
  • 25
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb, J. et al. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313, 1929-1935 (2006).
    • (2006) Science , vol.313 , pp. 1929-1935
    • Lamb, J.1
  • 26
    • 77957044703 scopus 로고    scopus 로고
    • Discovery of drug mode of action and drug repositioning from transcriptional responses
    • Iorio, F. et al. Discovery of drug mode of action and drug repositioning from transcriptional responses. Proc. Natl Acad. Sci. USA 107, 14621-14626 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 14621-14626
    • Iorio, F.1
  • 27
    • 84884200376 scopus 로고    scopus 로고
    • Characterization of drug-induced transcriptional modules: Towards drug repositioning and functional understanding
    • Iskar, M. et al. Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding. Mol. Syst. Biol. 9, 662 (2013).
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 662
    • Iskar, M.1
  • 28
    • 84899896360 scopus 로고    scopus 로고
    • Probabilistic drug connectivity mapping
    • Parkkinen, J. A. & Kaski, S. Probabilistic drug connectivity mapping. BMC Bioinf. 15, 113 (2014).
    • (2014) BMC Bioinf. , vol.15 , pp. 113
    • Parkkinen, J.A.1    Kaski, S.2
  • 29
    • 84979034960 scopus 로고    scopus 로고
    • Grouping 34 chemicals based on mode of action using connectivity mapping
    • De Abrew, K. N. et al. Grouping 34 chemicals based on mode of action using connectivity mapping. Toxicol. Sci. 151, 447-461 (2016).
    • (2016) Toxicol. Sci. , vol.151 , pp. 447-461
    • De Abrew, K.N.1
  • 30
    • 33749011163 scopus 로고    scopus 로고
    • The NCI60 human tumour cell line anticancer drug screen
    • Shoemaker, R. H. The NCI60 human tumour cell line anticancer drug screen. Nat. Rev. Cancer 6, 813-823 (2006).
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 813-823
    • Shoemaker, R.H.1
  • 31
    • 84867027478 scopus 로고    scopus 로고
    • The determination and interpretation of the therapeutic index in drug development
    • Muller, P. Y. & Milton, M. N. The determination and interpretation of the therapeutic index in drug development. Nat. Rev. Drug Discov. 11, 751-761 (2012).
    • (2012) Nat. Rev. Drug Discov. , vol.11 , pp. 751-761
    • Muller, P.Y.1    Milton, M.N.2
  • 32
    • 84943812903 scopus 로고    scopus 로고
    • Setting clinical exposure levels of concern for Drug-Induced Liver Injury (DILI) using mechanistic in vitro assays
    • Shah, F. et al. Setting clinical exposure levels of concern for Drug-Induced Liver Injury (DILI) using mechanistic in vitro assays. Toxicol. Sci. 147, 500-514 (2015).
    • (2015) Toxicol. Sci. , vol.147 , pp. 500-514
    • Shah, F.1
  • 33
    • 84876665555 scopus 로고    scopus 로고
    • The liver toxicity knowledge base: A systems approach to a complex end point
    • Chen, M. et al. The liver toxicity knowledge base: a systems approach to a complex end point. Clin. Pharmacol. Ther. 93, 409-412 (2013).
    • (2013) Clin. Pharmacol. Ther. , vol.93 , pp. 409-412
    • Chen, M.1
  • 35
    • 84930631638 scopus 로고    scopus 로고
    • Probabilistic machine learning and artificial intelligence
    • Ghahramani, Z. Probabilistic machine learning and artificial intelligence. Nature 28, 452-459 (2015).
    • (2015) Nature , vol.28 , pp. 452-459
    • Ghahramani, Z.1
  • 37
    • 84976585220 scopus 로고    scopus 로고
    • Risk of acute and serious liver injury associated to nimesulide and other NSAIDs: Data from drug-induced liver injury case-control study in Italy
    • Donati, M. et al. Risk of acute and serious liver injury associated to nimesulide and other NSAIDs: data from drug-induced liver injury case-control study in Italy. Br. J. Clin. Pharmacol. 82, 238-248 (2016).
    • (2016) Br. J. Clin. Pharmacol. , vol.82 , pp. 238-248
    • Donati, M.1
  • 38
    • 49249103327 scopus 로고    scopus 로고
    • Cellular imaging predictions of clinical drug-induced liver injury
    • Xu, J. J. et al. Cellular imaging predictions of clinical drug-induced liver injury. Toxicol. Sci. 105, 97-105 (2008).
    • (2008) Toxicol. Sci. , vol.105 , pp. 97-105
    • Xu, J.J.1
  • 39
    • 84876475743 scopus 로고    scopus 로고
    • Use of micropatterned cocultures to detect compounds that cause drug-induced liver injury in humans
    • Khetani, S. R. et al. Use of micropatterned cocultures to detect compounds that cause drug-induced liver injury in humans. Toxicol. Sci. 132, 107-117 (2013).
    • (2013) Toxicol. Sci. , vol.132 , pp. 107-117
    • Khetani, S.R.1
  • 40
    • 84883187061 scopus 로고    scopus 로고
    • A high content screening assay to predict human drug-induced liver injury during drug discovery
    • Persson, M., Løye, A. F., Mow, T. & Hornberg, J. J. A high content screening assay to predict human drug-induced liver injury during drug discovery. J. Pharmacol. Toxicol. Methods 68, 302-313 (2013).
    • (2013) J. Pharmacol. Toxicol. Methods , vol.68 , pp. 302-313
    • Persson, M.1    Løye, A.F.2    Mow, T.3    Hornberg, J.J.4
  • 41
    • 84903442033 scopus 로고    scopus 로고
    • A testing strategy to predict risk for drug-induced liver injury in humans using high-content screen assays and the 'rule-of-two' model
    • Chen, M. et al. A testing strategy to predict risk for drug-induced liver injury in humans using high-content screen assays and the 'rule-of-two' model. Arch. Toxicol. 88, 1439-1449 (2014).
    • (2014) Arch. Toxicol. , vol.88 , pp. 1439-1449
    • Chen, M.1
  • 42
    • 84964756585 scopus 로고    scopus 로고
    • Integrating publicly available data to generate computationally predicted adverse outcome pathways for fatty liver
    • Bell, S. M., Angrish, M. M., Wood, C. E. & Edwards, S. W. Integrating publicly available data to generate computationally predicted adverse outcome pathways for fatty liver. Toxicol. Sci. 150, 510-520 (2016).
    • (2016) Toxicol. Sci. , vol.150 , pp. 510-520
    • Bell, S.M.1    Angrish, M.M.2    Wood, C.E.3    Edwards, S.W.4
  • 43
    • 67650445156 scopus 로고    scopus 로고
    • Toxicology for the twenty-first century
    • Hartung, T. Toxicology for the twenty-first century. Nature 460, 208-212 (2009).
    • (2009) Nature , vol.460 , pp. 208-212
    • Hartung, T.1
  • 44
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry, R. A. et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264 (2003).
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 45
    • 29144535372 scopus 로고    scopus 로고
    • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    • Dai, M. et al. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res. 33, e175 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. e175
    • Dai, M.1
  • 47
    • 84961289551 scopus 로고    scopus 로고
    • Orchestrating high-throughput genomic analysis with Bioconductor
    • Huber, W. et al. Orchestrating high-throughput genomic analysis with Bioconductor. Nat. Methods 12, 115-121 (2015).
    • (2015) Nat. Methods , vol.12 , pp. 115-121
    • Huber, W.1
  • 48
    • 84861545549 scopus 로고    scopus 로고
    • Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1,159 drugs
    • Khan, S. A. et al. Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1,159 drugs. BMC Bioinf. 13, 112 (2012).
    • (2012) BMC Bioinf. , vol.13 , pp. 112
    • Khan, S.A.1
  • 49
    • 54249155522 scopus 로고    scopus 로고
    • Network pharmacology: The next paradigm in drug discovery
    • Hopkins, A. L. Network pharmacology: the next paradigm in drug discovery. Nat. Chem. Biol. 4, 682-690 (2008).
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 682-690
    • Hopkins, A.L.1
  • 50
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 51
    • 77955889132 scopus 로고    scopus 로고
    • ROAST: Rotation gene set tests for complex microarray experiments
    • Wu, D. et al. ROAST: rotation gene set tests for complex microarray experiments. Bioinformatics 26, 2176-2182 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2176-2182
    • Wu, D.1
  • 52
    • 84926507971 scopus 로고    scopus 로고
    • Limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie, M. E. et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. e47
    • Ritchie, M.E.1
  • 53
    • 84971667844 scopus 로고    scopus 로고
    • Gene set analysis approaches for RNA-seq data: Performance evaluation and application guideline
    • Rahmatallah, Y., Emmert-Streib, F. & Glazko, G. Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline. Brief Bioinform. 17, 393-407 (2016).
    • (2016) Brief Bioinform. , vol.17 , pp. 393-407
    • Rahmatallah, Y.1    Emmert-Streib, F.2    Glazko, G.3
  • 54
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa, A., Rahnenführer, J. & Lengauer, T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22, 1600-1607 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenführer, J.2    Lengauer, T.3
  • 55
    • 84894571860 scopus 로고    scopus 로고
    • Causal analysis approaches in ingenuity pathway analysis
    • Krämer, A., Green, J., Pollard, J. & Tugendreich, S. Causal analysis approaches in ingenuity pathway analysis. Bioinformatics 30, 523-530 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 523-530
    • Krämer, A.1    Green, J.2    Pollard, J.3    Tugendreich, S.4
  • 56
    • 66349091744 scopus 로고    scopus 로고
    • Probabilistic retrieval and visualization of biologically relevant microarray experiments
    • Caldas, J., Gehlenborg, N., Faisal, A., Brazma, A. & Kaski, S. Probabilistic retrieval and visualization of biologically relevant microarray experiments. Bioinformatics 25, i145-i153 (2009).
    • (2009) Bioinformatics , vol.25 , pp. i145-i153
    • Caldas, J.1    Gehlenborg, N.2    Faisal, A.3    Brazma, A.4    Kaski, S.5
  • 57
    • 20744439107 scopus 로고    scopus 로고
    • MADE4: An R package for multivariate analysis of gene expression data
    • Culhane, A. C., Thioulouse, J., Perrière, G. & Higgins, D. G. MADE4: an R package for multivariate analysis of gene expression data. Bioinformatics 21, 2789-2790 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 2789-2790
    • Culhane, A.C.1    Thioulouse, J.2    Perrière, G.3    Higgins, D.G.4
  • 58
    • 70349665204 scopus 로고    scopus 로고
    • High-throughput cell-based screening of 4,910 known drugs and drug-like small molecules identifies disulfiram as an inhibitor of prostate cancer cell growth
    • Iljin, K. et al. High-throughput cell-based screening of 4,910 known drugs and drug-like small molecules identifies disulfiram as an inhibitor of prostate cancer cell growth. Clin Cancer Res. 15, 6070-6078 (2009).
    • (2009) Clin Cancer Res. , vol.15 , pp. 6070-6078
    • Iljin, K.1
  • 59
    • 84969256252 scopus 로고    scopus 로고
    • Identification of selective cytotoxic and synthetic lethal drug responses in triple negative breast cancer cells
    • Gautam, P. et al. Identification of selective cytotoxic and synthetic lethal drug responses in triple negative breast cancer cells. Mol. Cancer 15, 34 (2016).
    • (2016) Mol. Cancer , vol.15 , pp. 34
    • Gautam, P.1
  • 61
    • 79952709519 scopus 로고    scopus 로고
    • PROC: An open-source package for R and S+ to analyze and compare ROC curves
    • Robin, X. et al. pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinf. 12, 77 (2011).
    • (2011) BMC Bioinf. , vol.12 , pp. 77
    • Robin, X.1
  • 63
    • 33846829987 scopus 로고    scopus 로고
    • The pls package: Principal component and partial least squares regression in R
    • Mevik, B. H. & Wehrens, R. The pls package: principal component and partial least squares regression in R. J. Stat. Softw. 18, 1-24 (2007).
    • (2007) J. Stat. Softw. , vol.18 , pp. 1-24
    • Mevik, B.H.1    Wehrens, R.2
  • 66
    • 85020242561 scopus 로고    scopus 로고
    • The Chemistry development kit (CDK) v2.0: Atom typing, depiction, molecular formulas, and substructure searching
    • Willighagen, E. L. et al. The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminform. 9, 33 (2017).
    • (2017) J. Cheminform. , vol.9 , pp. 33
    • Willighagen, E.L.1
  • 67
  • 68
    • 33645823677 scopus 로고    scopus 로고
    • A new summarization method for affymetrix probe level data
    • Hochreiter, S., Clevert, D. A. & Obermayer, K. A new summarization method for affymetrix probe level data. Bioinformatics 22, 943-949 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 943-949
    • Hochreiter, S.1    Clevert, D.A.2    Obermayer, K.3
  • 70
    • 84907096801 scopus 로고    scopus 로고
    • StructSSI: Simultaneous and selective inference for grouped or hierarchically structured data
    • Sankaran, K. & Holmes, S. structSSI: Simultaneous and selective inference for grouped or hierarchically structured data. J. Stat. Softw. 59, 1-21 (2014).
    • (2014) J. Stat. Softw. , vol.59 , pp. 1-21
    • Sankaran, K.1    Holmes, S.2
  • 71
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Friedman, J., Hastie, T. & Tibshirani, R. Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw. 33, 1-22 (2010).
    • (2010) J. Stat. Softw. , vol.33 , pp. 1-22
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 73
    • 84934993654 scopus 로고    scopus 로고
    • Statistical learning and selective inference
    • Taylor, J. & Tibshirani, R. J. Statistical learning and selective inference. Proc. Natl Acad. Sci. USA 112, 7629-7634 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 7629-7634
    • Taylor, J.1    Tibshirani, R.J.2
  • 74
    • 84906937883 scopus 로고    scopus 로고
    • Human drug-induced liver injury severity is highly associated with dual inhibition of liver mitochondrial function and bile salt export pump
    • Aleo, M. D. et al. Human drug-induced liver injury severity is highly associated with dual inhibition of liver mitochondrial function and bile salt export pump. Hepatology 60, 1015-1022 (2014).
    • (2014) Hepatology , vol.60 , pp. 1015-1022
    • Aleo, M.D.1
  • 75
    • 84891315751 scopus 로고    scopus 로고
    • A correlation between the in vitro drug toxicity of drugs to cell lines that express human P450s and their propensity to cause liver injury in humans
    • Gustafsson, F., Foster, A. J., Sarda, S., Bridgland-Taylor, M. H. & Kenna, J. G. A correlation between the in vitro drug toxicity of drugs to cell lines that express human P450s and their propensity to cause liver injury in humans. Toxicol. Sci. 137, 189-211 (2014).
    • (2014) Toxicol. Sci. , vol.137 , pp. 189-211
    • Gustafsson, F.1    Foster, A.J.2    Sarda, S.3    Bridgland-Taylor, M.H.4    Kenna, J.G.5
  • 76
    • 77955362472 scopus 로고    scopus 로고
    • Developing structure-activity relationships for the prediction of hepatotoxicity
    • Greene, N. et al. Developing structure-activity relationships for the prediction of hepatotoxicity. Chem. Res. Toxicol. 23, 1215-1222 (2010).
    • (2010) Chem. Res. Toxicol. , vol.23 , pp. 1215-1222
    • Greene, N.1
  • 77
    • 84901781625 scopus 로고    scopus 로고
    • Drug-induced liver injury and drug development: Industry perspective
    • Regev, A. Drug-induced liver injury and drug development: industry perspective. Semin. Liver Dis. 34, 227-239 (2014).
    • (2014) Semin. Liver Dis. , vol.34 , pp. 227-239
    • Regev, A.1
  • 78
    • 84862276509 scopus 로고    scopus 로고
    • To test or not to test: Preliminary assessment of normality when comparing two independent samples
    • Rochon, J., Gondan, M. & Kieser, M. To test or not to test: Preliminary assessment of normality when comparing two independent samples. BMC Med. Res. Methodol. 1, 81 (2012).
    • (2012) BMC Med. Res. Methodol. , vol.1 , pp. 81
    • Rochon, J.1    Gondan, M.2    Kieser, M.3


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