-
2
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
Allison DB, Cui X, Page GP, Sabripour M (2006) Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 7: 55-65
-
(2006)
Nat Rev Genet
, vol.7
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
3
-
-
41149159790
-
-
El Ghaoui L, Lanckriet GRG, Natsoulis G (2003) Robust classifiers with interval data. Report no. UCB/CSD-03-1279 Computer Science Division (EECS), University of California, Berkeley, CA
-
El Ghaoui L, Lanckriet GRG, Natsoulis G (2003) Robust classifiers with interval data. Report no. UCB/CSD-03-1279 Computer Science Division (EECS), University of California, Berkeley, CA
-
-
-
-
4
-
-
20844447668
-
Differential display in rat livers treated for 13 weeks with phenobarbital implicates a role for metabolic and oxidative stress in nongenotoxic carcinogenicity
-
Elrick M, Kramer J, Alden C, Blomme E, Bunch R, Cabonce M, Curtiss S, Kier L, Kolaja K, Rodi C (2005) Differential display in rat livers treated for 13 weeks with phenobarbital implicates a role for metabolic and oxidative stress in nongenotoxic carcinogenicity. Toxicol Pathol 33: 118-126
-
(2005)
Toxicol Pathol
, vol.33
, pp. 118-126
-
-
Elrick, M.1
Kramer, J.2
Alden, C.3
Blomme, E.4
Bunch, R.5
Cabonce, M.6
Curtiss, S.7
Kier, L.8
Kolaja, K.9
Rodi, C.10
-
5
-
-
0033853732
-
Fibrogenesis I. New insights into hepatic stellate cell activation: The simple becomes complex
-
Eng FJ, Friedman SL (2000) Fibrogenesis I. New insights into hepatic stellate cell activation: the simple becomes complex. Am J Physiol Gastrointest Liver Physiol 279: G7-G11
-
(2000)
Am J Physiol Gastrointest Liver Physiol
, vol.279
-
-
Eng, F.J.1
Friedman, S.L.2
-
6
-
-
84856401734
-
Liver fibrosis: Signals leading to the amplification of the fibrogenic hepatic stellate cell
-
Gabele E, Brenner DA, Rippe RA (2003) Liver fibrosis: signals leading to the amplification of the fibrogenic hepatic stellate cell. Front Biosci 8: d69-d77
-
(2003)
Front Biosci
, vol.8
-
-
Gabele, E.1
Brenner, D.A.2
Rippe, R.A.3
-
7
-
-
20944433525
-
Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action
-
Ganter B, Tugendreich S, Pearson CI, Ayanoglu E, Baumhueter S, Bostian KA, Brady L, Browne LJ, Calvin JT, Day GJ, Breckenridge N, Dunlea S, Eynon BP, Furness LM, Ferng J, Fielden MR, Fujimoto SY, Gong L, Hu C, Idury R et al (2005) Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action. J Biotechnol 119: 219-244
-
(2005)
J Biotechnol
, vol.119
, pp. 219-244
-
-
Ganter, B.1
Tugendreich, S.2
Pearson, C.I.3
Ayanoglu, E.4
Baumhueter, S.5
Bostian, K.A.6
Brady, L.7
Browne, L.J.8
Calvin, J.T.9
Day, G.J.10
Breckenridge, N.11
Dunlea, S.12
Eynon, B.P.13
Furness, L.M.14
Ferng, J.15
Fielden, M.R.16
Fujimoto, S.Y.17
Gong, L.18
Hu, C.19
Idury, R.20
more..
-
8
-
-
33947143078
-
Gene expression during chemically induced liver fibrosis: Effect of halofuginone on TGF-beta signaling
-
Gnainsky Y, Kushnirsky Z, Bilu G, Hagai Y, Genina O, Volpin H, Bruck R, Spira G, Nagler A, Kawada N, Yoshizato K, Reinhardt DP, Libermann TA, Pines M (2007) Gene expression during chemically induced liver fibrosis: effect of halofuginone on TGF-beta signaling. Cell Tissue Res 328: 153-166
-
(2007)
Cell Tissue Res
, vol.328
, pp. 153-166
-
-
Gnainsky, Y.1
Kushnirsky, Z.2
Bilu, G.3
Hagai, Y.4
Genina, O.5
Volpin, H.6
Bruck, R.7
Spira, G.8
Nagler, A.9
Kawada, N.10
Yoshizato, K.11
Reinhardt, D.P.12
Libermann, T.A.13
Pines, M.14
-
9
-
-
0142128826
-
Gene expression analysis reveals chemical-specific profiles
-
Hamadeh H, Bushel P, Jayadev S, Martin K, DiSorbo O, Sieber S, Bennett L, Tennant R, Stoll R, Barrett J (2002) Gene expression analysis reveals chemical-specific profiles. Toxicol Sci 67: 219
-
(2002)
Toxicol Sci
, vol.67
, pp. 219
-
-
Hamadeh, H.1
Bushel, P.2
Jayadev, S.3
Martin, K.4
DiSorbo, O.5
Sieber, S.6
Bennett, L.7
Tennant, R.8
Stoll, R.9
Barrett, J.10
-
10
-
-
0034568109
-
Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
-
RESEARCH0003
-
Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, Brown P (2000) 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. Genome Biol 1: RESEARCH0003
-
(2000)
Genome Biol
, vol.1
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.B.3
Alizadeh, A.4
Levy, R.5
Staudt, L.6
Chan, W.C.7
Botstein, D.8
Brown, P.9
-
12
-
-
3242742968
-
Gene expression profiling of rat livers reveals indicators of potential adverse effects
-
Heinloth A, Irwin R, Boorman G, Nettesheim P, Fannin R, Sieber S, Snell M, Tucker C, Li L, Travlos G (2004) Gene expression profiling of rat livers reveals indicators of potential adverse effects. Toxicol Sci 80: 193
-
(2004)
Toxicol Sci
, vol.80
, pp. 193
-
-
Heinloth, A.1
Irwin, R.2
Boorman, G.3
Nettesheim, P.4
Fannin, R.5
Sieber, S.6
Snell, M.7
Tucker, C.8
Li, L.9
Travlos, G.10
-
13
-
-
2142639373
-
Gene expression profiling reveals multiple toxicity endpoints induced by hepatotoxicants
-
Huang Q, Jin X, Gaillard ET, Knight BL, Pack FD, Stoltz JH, Jayadev S, Blanchard KT (2004) Gene expression profiling reveals multiple toxicity endpoints induced by hepatotoxicants. Mutat Res 549: 147-167
-
(2004)
Mutat Res
, vol.549
, pp. 147-167
-
-
Huang, Q.1
Jin, X.2
Gaillard, E.T.3
Knight, B.L.4
Pack, F.D.5
Stoltz, J.H.6
Jayadev, S.7
Blanchard, K.T.8
-
15
-
-
33847363203
-
Models of liver fibrosis: Exploring the dynamic nature of inflammation and repair in a solid organ
-
Iredale JP (2007) Models of liver fibrosis: exploring the dynamic nature of inflammation and repair in a solid organ. J Clin Invest 117: 539-548
-
(2007)
J Clin Invest
, vol.117
, pp. 539-548
-
-
Iredale, J.P.1
-
16
-
-
2942706149
-
Changes in the gene expression associated with carbon tetrachloride-induced liver fibrosis persist after cessation of dosing in mice
-
Jiang Y, Liu J, Waalkes M, Kang YJ (2004) Changes in the gene expression associated with carbon tetrachloride-induced liver fibrosis persist after cessation of dosing in mice. Toxicol Sci 79: 404-410
-
(2004)
Toxicol Sci
, vol.79
, pp. 404-410
-
-
Jiang, Y.1
Liu, J.2
Waalkes, M.3
Kang, Y.J.4
-
17
-
-
0343621452
-
Prediction of rodent carcinogenicity utilizing a battery of in vitro and in vivo genotoxicity tests
-
Kim BS, Margolin BH (1999) Prediction of rodent carcinogenicity utilizing a battery of in vitro and in vivo genotoxicity tests. Environ Mol Mutagen 34: 297-304
-
(1999)
Environ Mol Mutagen
, vol.34
, pp. 297-304
-
-
Kim, B.S.1
Margolin, B.H.2
-
18
-
-
33749335282
-
The connectivity map: Using gene-expression signatures to connect small molecules, genes, and disease
-
Lamb J, Crawford E, Peck D, Modell J, Blat I, Wrobel M, Lerner J, Brunet J, Subramanian A, Ross K (2006) The connectivity map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313: 1929
-
(2006)
Science
, vol.313
, pp. 1929
-
-
Lamb, J.1
Crawford, E.2
Peck, D.3
Modell, J.4
Blat, I.5
Wrobel, M.6
Lerner, J.7
Brunet, J.8
Subramanian, A.9
Ross, K.10
-
19
-
-
0027565967
-
Pathophysiology and pharmacologic modulation of hepatic fibrosis
-
Leveille CR, Arias IM (1993) Pathophysiology and pharmacologic modulation of hepatic fibrosis. J Vet Intern Med 7: 73-84
-
(1993)
J Vet Intern Med
, vol.7
, pp. 73-84
-
-
Leveille, C.R.1
Arias, I.M.2
-
20
-
-
13244292283
-
Multiclass discovery in array data
-
Liu Y, Ringner M (2004) Multiclass discovery in array data. BMC Bioinformatics 5: 70
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 70
-
-
Liu, Y.1
Ringner, M.2
-
21
-
-
4644291153
-
Accuracy of diagnostic tests read with and without clinical information: A systematic review. Meta-analysis of prostate-specific antigen and digital rectal examination as screening tests for prostate carcinoma. Prediction of rodent carcinogenicity utilizing a battery of in vitro and in vivo genotoxicity tests
-
Loy CT, Irwig L, Mistry K, Cable G, Kim BS, Margolin BH (2004) Accuracy of diagnostic tests read with and without clinical information: a systematic review. Meta-analysis of prostate-specific antigen and digital rectal examination as screening tests for prostate carcinoma. Prediction of rodent carcinogenicity utilizing a battery of in vitro and in vivo genotoxicity tests. JAMA 292: 1602-1609
-
(2004)
JAMA
, vol.292
, pp. 1602-1609
-
-
Loy, C.T.1
Irwig, L.2
Mistry, K.3
Cable, G.4
Kim, B.S.5
Margolin, B.H.6
-
22
-
-
0028918915
-
Multiple defects and perinatal death in mice deficient in follistatin
-
Matzuk MM, Lu N, Vogel H, Sellheyer K, Roop DR, Bradley A (1995) Multiple defects and perinatal death in mice deficient in follistatin. Nature 374: 360-363
-
(1995)
Nature
, vol.374
, pp. 360-363
-
-
Matzuk, M.M.1
Lu, N.2
Vogel, H.3
Sellheyer, K.4
Roop, D.R.5
Bradley, A.6
-
23
-
-
13444249852
-
Prediction of cancer outcome with microarrays: A multiple random validation strategy
-
Michiels S, Koscielny S, Hill C (2005) Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 365: 488-492
-
(2005)
Lancet
, vol.365
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
24
-
-
0041746616
-
Meta-analysis of prostate-specific antigen and digital rectal examination as screening tests for prostate carcinoma
-
Mistry K, Cable G (2003) Meta-analysis of prostate-specific antigen and digital rectal examination as screening tests for prostate carcinoma. J Am Board Fam Pract 16: 95-101
-
(2003)
J Am Board Fam Pract
, vol.16
, pp. 95-101
-
-
Mistry, K.1
Cable, G.2
-
25
-
-
21144462902
-
Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures
-
Natsoulis G, El Ghaoui L, Lanckriet GR, Tolley AM, Leroy F, Dunlea S, Eynon BP, Pearson CI, Tugendreich S, Jarnagin K (2005) Classification of a large microarray data set: algorithm comparison and analysis of drug signatures. Genome Res 15: 724-736
-
(2005)
Genome Res
, vol.15
, pp. 724-736
-
-
Natsoulis, G.1
El Ghaoui, L.2
Lanckriet, G.R.3
Tolley, A.M.4
Leroy, F.5
Dunlea, S.6
Eynon, B.P.7
Pearson, C.I.8
Tugendreich, S.9
Jarnagin, K.10
-
26
-
-
33845462135
-
Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity
-
Nie A, McMillian M, Brandon Parker J, Leone A, Bryant S, Yieh L, Bittner A, Nelson J, Carmen A, Wan J (2006) Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity. Mol Carcinog 45: 914-933
-
(2006)
Mol Carcinog
, vol.45
, pp. 914-933
-
-
Nie, A.1
McMillian, M.2
Brandon Parker, J.3
Leone, A.4
Bryant, S.5
Yieh, L.6
Bittner, A.7
Nelson, J.8
Carmen, A.9
Wan, J.10
-
27
-
-
0031418657
-
Role of PPAR alpha in the mechanism of action of the nongenotoxic carcinogen and peroxisome proliferator Wy-14,643
-
Peters JM, Cattley RC, Gonzalez FJ (1997) Role of PPAR alpha in the mechanism of action of the nongenotoxic carcinogen and peroxisome proliferator Wy-14,643. Carcinogenesis 18: 2029-2033
-
(1997)
Carcinogenesis
, vol.18
, pp. 2029-2033
-
-
Peters, J.M.1
Cattley, R.C.2
Gonzalez, F.J.3
-
28
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush J (2001) Computational analysis of microarray data. Nat Rev Genet 2: 418-427
-
(2001)
Nat Rev Genet
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
29
-
-
0033810010
-
Morphology of liver repair following cholestatic liver injury: Resolution of ductal hyperplasia, matrix deposition and regression of myofibroblasts
-
Ramm GA, Carr SC, Bridle KR, Li L, Britton RS, Crawford DH, Vogler CA, Bacon BR, Tracy TF (2000) Morphology of liver repair following cholestatic liver injury: resolution of ductal hyperplasia, matrix deposition and regression of myofibroblasts. Liver 20: 387-396
-
(2000)
Liver
, vol.20
, pp. 387-396
-
-
Ramm, G.A.1
Carr, S.C.2
Bridle, K.R.3
Li, L.4
Britton, R.S.5
Crawford, D.H.6
Vogler, C.A.7
Bacon, B.R.8
Tracy, T.F.9
-
30
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
Simon R, Radmacher MD, Dobbin K, McShane LM (2003) Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 95: 14-18
-
(2003)
J Natl Cancer Inst
, vol.95
, pp. 14-18
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
31
-
-
33751584998
-
Compendium of gene expression profiles comprising a baseline model of the human liver drug metabolism transcriptome
-
Slatter J, Templeton I, Castle J, Kulkarni A, Rushmore T, Richards K, He Y, Dai X, Cheng O, Caguyong M (2006) Compendium of gene expression profiles comprising a baseline model of the human liver drug metabolism transcriptome. Xenobiotica 36: 938-962
-
(2006)
Xenobiotica
, vol.36
, pp. 938-962
-
-
Slatter, J.1
Templeton, I.2
Castle, J.3
Kulkarni, A.4
Rushmore, T.5
Richards, K.6
He, Y.7
Dai, X.8
Cheng, O.9
Caguyong, M.10
-
32
-
-
33750990783
-
Gene expression profiles of hepatic cell-type specific marker genes in progression of liver fibrosis
-
Takahara Y, Takahashi M, Wagatsuma H, Yokoya F, Zhang QW, Yamaguchi M, Aburatani H, Kawada N (2006) Gene expression profiles of hepatic cell-type specific marker genes in progression of liver fibrosis. World J Gastroenterol 12: 6473-6499
-
(2006)
World J Gastroenterol
, vol.12
, pp. 6473-6499
-
-
Takahara, Y.1
Takahashi, M.2
Wagatsuma, H.3
Yokoya, F.4
Zhang, Q.W.5
Yamaguchi, M.6
Aburatani, H.7
Kawada, N.8
-
33
-
-
4344576756
-
A gene-expression signature can quantify the degree of hepatic fibrosis in the rat
-
Utsunomiya T, Okamoto M, Hashimoto M, Yoshinaga K, Shiraishi T, Tanaka F, Mimori K, Inoue H, Watanabe G, Barnard GF, Mori M (2004) A gene-expression signature can quantify the degree of hepatic fibrosis in the rat. J Hepatol 41: 399-406
-
(2004)
J Hepatol
, vol.41
, pp. 399-406
-
-
Utsunomiya, T.1
Okamoto, M.2
Hashimoto, M.3
Yoshinaga, K.4
Shiraishi, T.5
Tanaka, F.6
Mimori, K.7
Inoue, H.8
Watanabe, G.9
Barnard, G.F.10
Mori, M.11
-
34
-
-
33644860703
-
Bias in error estimation when using cross-validation for model selection
-
Varma S, Simon R (2006) Bias in error estimation when using cross-validation for model selection. BMC Bioinformatics 7: 91
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 91
-
-
Varma, S.1
Simon, R.2
-
35
-
-
0034040368
-
The impact of genomics-based technologies on drug safety evaluation
-
Waring J, Ulrich R (2000) The impact of genomics-based technologies on drug safety evaluation. Annu Rev Pharmacol Toxicol 40: 335-352
-
(2000)
Annu Rev Pharmacol Toxicol
, vol.40
, pp. 335-352
-
-
Waring, J.1
Ulrich, R.2
-
36
-
-
0035196734
-
Regulation of transforming growth factorbeta signaling
-
Zhu HJ, Burgess AW (2001) Regulation of transforming growth factorbeta signaling. Mol Cell Biol Res Commun 4: 321-330
-
(2001)
Mol Cell Biol Res Commun
, vol.4
, pp. 321-330
-
-
Zhu, H.J.1
Burgess, A.W.2
|