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Volumn 8, Issue , 2017, Pages

Single-virus genomics reveals hidden cosmopolitan and abundant viruses

Author keywords

[No Author keywords available]

Indexed keywords

GENOME; GENOMICS; MARINE ENVIRONMENT; MICROBIAL COMMUNITY; MICROORGANISM; VIRUS;

EID: 85021451179     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15892     Document Type: Article
Times cited : (143)

References (64)
  • 1
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses-major players in the global ecosystem
    • Suttle, C. A. Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812 (2007).
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 2
    • 84989812720 scopus 로고    scopus 로고
    • Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
    • Roux, S. et al. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature 537, 689-693 (2016).
    • (2016) Nature , vol.537 , pp. 689-693
    • Roux, S.1
  • 3
    • 84929998256 scopus 로고    scopus 로고
    • Ocean plankton. Patterns and ecological drivers of ocean viral communities
    • Brum, J. R. et al. Ocean plankton. Patterns and ecological drivers of ocean viral communities. Science 348, 1261498 (2015).
    • (2015) Science , vol.348 , pp. 1261498
    • Brum, J.R.1
  • 4
    • 84984985848 scopus 로고    scopus 로고
    • Uncovering Earth's virome
    • Paez-Espino, D. et al. Uncovering Earth's virome. Nature 536, 425-430 (2016).
    • (2016) Nature , vol.536 , pp. 425-430
    • Paez-Espino, D.1
  • 5
    • 84987654794 scopus 로고    scopus 로고
    • Healthy human gut phageome
    • Manrique, P. et al. Healthy human gut phageome. Proc. Natl Acad. Sci. USA 113, 10400-10405 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 10400-10405
    • Manrique, P.1
  • 6
    • 84905041075 scopus 로고    scopus 로고
    • A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
    • Dutilh, B. E. et al. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat. Commun. 5, 1-11 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 1-11
    • Dutilh, B.E.1
  • 7
    • 84906942533 scopus 로고    scopus 로고
    • Human oral viruses are personal, persistent and genderconsistent
    • Abeles, S. R. et al. Human oral viruses are personal, persistent and genderconsistent. ISME J. 8, 1753-1767 (2014).
    • (2014) ISME J. , vol.8 , pp. 1753-1767
    • Abeles, S.R.1
  • 8
    • 80053528043 scopus 로고    scopus 로고
    • The human gut virome: Inter-individual variation and dynamic response to diet
    • Minot, S. et al. The human gut virome: inter-individual variation and dynamic response to diet. Genome Res. 21, 1616-1625 (2011).
    • (2011) Genome Res. , vol.21 , pp. 1616-1625
    • Minot, S.1
  • 9
    • 84939526110 scopus 로고    scopus 로고
    • Viral dark matter and virus-host interactions resolved from publicly available microbial genomes
    • Roux, S., Hallam, S. J., Woyke, T. & Sullivan, M. B. Viral dark matter and virus-host interactions resolved from publicly available microbial genomes. Elife 4, 1-20 (2015).
    • (2015) Elife , vol.4 , pp. 1-20
    • Roux, S.1    Hallam, S.J.2    Woyke, T.3    Sullivan, M.B.4
  • 11
  • 12
    • 80052479893 scopus 로고    scopus 로고
    • Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
    • Swan, B. K. et al. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333, 1296-1300 (2011).
    • (2011) Science , vol.333 , pp. 1296-1300
    • Swan, B.K.1
  • 13
    • 84879932140 scopus 로고    scopus 로고
    • Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
    • Swan, B. K. et al. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc. Natl Acad. Sci. USA 110, 11463-11468 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 11463-11468
    • Swan, B.K.1
  • 14
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437 (2013).
    • (2013) Nature , vol.499 , pp. 431-437
    • Rinke, C.1
  • 15
    • 84899559579 scopus 로고    scopus 로고
    • Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
    • Kashtan, N. et al. Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science 344, 416-420 (2014).
    • (2014) Science , vol.344 , pp. 416-420
    • Kashtan, N.1
  • 16
    • 84958606331 scopus 로고    scopus 로고
    • Single-cell genome sequencing: Current state of the science
    • Gawad, C., Koh, W. & Quake, S. R. Single-cell genome sequencing: current state of the science. Nat. Rev. Genet. 17, 175-188 (2016).
    • (2016) Nat. Rev. Genet. , vol.17 , pp. 175-188
    • Gawad, C.1    Koh, W.2    Quake, S.R.3
  • 17
    • 79959842126 scopus 로고    scopus 로고
    • Genomic island variability facilitates Prochlorococcus-virus coexistence
    • Avrani, S., Wurtzel, O., Sharon, I., Sorek, R. & Lindell, D. Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474, 604-608 (2011).
    • (2011) Nature , vol.474 , pp. 604-608
    • Avrani, S.1    Wurtzel, O.2    Sharon, I.3    Sorek, R.4    Lindell, D.5
  • 18
    • 84879678051 scopus 로고    scopus 로고
    • Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
    • Albertsen, M. et al. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat. Biotechnol. 31, 533-538 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 533-538
    • Albertsen, M.1
  • 19
    • 79952973319 scopus 로고    scopus 로고
    • Single virus genomics: A new tool for virus discovery
    • Allen, L. Z. et al. Single virus genomics: a new tool for virus discovery. PLoS ONE 6, e17722 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e17722
    • Allen, L.Z.1
  • 20
    • 84899471898 scopus 로고    scopus 로고
    • Marine viruses, a genetic reservoir revealed by targeted viromics
    • Martínez Martínez, J., Swan, B. K. & Wilson, W. H. Marine viruses, a genetic reservoir revealed by targeted viromics. ISME J. 8, 1079-1088 (2014).
    • (2014) ISME J. , vol.8 , pp. 1079-1088
    • Martínez Martínez, J.1    Swan, B.K.2    Wilson, W.H.3
  • 21
    • 84899552918 scopus 로고    scopus 로고
    • Metavir 2: New tools for viral metagenome comparison and assembled virome analysis
    • Roux, S., Tournayre, J., Mahul, A., Debroas, D. & Enault, F. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics 15, 76 (2014).
    • (2014) BMC Bioinformatics , vol.15 , pp. 76
    • Roux, S.1    Tournayre, J.2    Mahul, A.3    Debroas, D.4    Enault, F.5
  • 22
    • 84892175074 scopus 로고    scopus 로고
    • Bacterial vesicles in marine ecosystems
    • Biller, S. J. et al. Bacterial vesicles in marine ecosystems. Science 343, 183-186 (2014).
    • (2014) Science , vol.343 , pp. 183-186
    • Biller, S.J.1
  • 23
    • 84874530236 scopus 로고    scopus 로고
    • The Pacific Ocean Virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology
    • Hurwitz, B. L. & Sullivan, M. B. The Pacific Ocean Virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS ONE 8, e57355 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e57355
    • Hurwitz, B.L.1    Sullivan, M.B.2
  • 24
    • 85046025173 scopus 로고    scopus 로고
    • The marine viromes of four oceanic regions
    • Angly, F. E. et al. The marine viromes of four oceanic regions. PLoS Biol. 4, e368 (2006).
    • (2006) PLoS Biol. , vol.4 , pp. e368
    • Angly, F.E.1
  • 25
    • 84929992013 scopus 로고    scopus 로고
    • Structure and function of the global ocean microbiome
    • Sunagawa, S. et al. Structure and function of the global ocean microbiome. Science 348, 1-9 (2015).
    • (2015) Science , vol.348 , pp. 1-9
    • Sunagawa, S.1
  • 26
    • 84945491851 scopus 로고    scopus 로고
    • Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton
    • Labonté, J. M. et al. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. ISME J. 9, 2386-2399 (2015).
    • (2015) ISME J. , vol.9 , pp. 2386-2399
    • Labonté, J.M.1
  • 27
    • 84874193410 scopus 로고    scopus 로고
    • Abundant SAR11 viruses in the ocean
    • Zhao, Y. et al. Abundant SAR11 viruses in the ocean. Nature 494, 357-360 (2013).
    • (2013) Nature , vol.494 , pp. 357-360
    • Zhao, Y.1
  • 28
    • 84876490711 scopus 로고    scopus 로고
    • Are we missing half of the viruses in the ocean?
    • Steward, G. F. et al. Are we missing half of the viruses in the ocean? ISME J. 7, 672-679 (2013).
    • (2013) ISME J. , vol.7 , pp. 672-679
    • Steward, G.F.1
  • 29
    • 84860008730 scopus 로고    scopus 로고
    • Capturing single cell genomes of active polysaccharide degraders: An unexpected contribution of verrucomicrobia
    • Martinez-Garcia, M. et al. Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of verrucomicrobia. PLoS ONE 7, e35314 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e35314
    • Martinez-Garcia, M.1
  • 30
    • 85016002937 scopus 로고    scopus 로고
    • Alignment-free d2 oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
    • Ahlgren, N. A., Ren, J., Lu, Y. Y., Fuhrman, J. A. & Sun, F. Alignment-free d2 oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. Nucleic Acids Res. 45, 39-53 (2017).
    • (2017) Nucleic Acids Res. , vol.45 , pp. 39-53
    • Ahlgren, N.A.1    Ren, J.2    Lu, Y.Y.3    Fuhrman, J.A.4    Sun, F.5
  • 31
    • 84959474801 scopus 로고    scopus 로고
    • Illuminating structural proteins in viral 'dark matter' with metaproteomics
    • Brum, J. R. et al. Illuminating structural proteins in viral 'dark matter' with metaproteomics. Proc. Natl Acad. Sci. USA 113, 2436-2441 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 2436-2441
    • Brum, J.R.1
  • 32
    • 1642386112 scopus 로고    scopus 로고
    • Optimization of procedures for counting viruses by flow cytometry
    • Brussaard, C. P. D. Optimization of procedures for counting viruses by flow cytometry. Appl. Environ. Microbiol. 70, 1506-1513 (2004).
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1506-1513
    • Brussaard, C.P.D.1
  • 33
    • 85008394347 scopus 로고    scopus 로고
    • Consensus statement: Virus taxonomy in the age of metagenomics
    • Simmonds, P. et al. Consensus statement: virus taxonomy in the age of metagenomics. Nat. Rev. Microbiol. 15, 161-168 (2017).
    • (2017) Nat. Rev. Microbiol. , vol.15 , pp. 161-168
    • Simmonds, P.1
  • 34
    • 84906254581 scopus 로고    scopus 로고
    • Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
    • Deng, L. et al. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature 513, 242-245 (2014).
    • (2014) Nature , vol.513 , pp. 242-245
    • Deng, L.1
  • 35
    • 84996629629 scopus 로고    scopus 로고
    • Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
    • Gregory, A. C. et al. Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. BMC Genomics 17, 930 (2016).
    • (2016) BMC Genomics , vol.17 , pp. 930
    • Gregory, A.C.1
  • 36
    • 70350180460 scopus 로고    scopus 로고
    • Explaining microbial population genomics through phage predation
    • Rodriguez-Valera, F. et al. Explaining microbial population genomics through phage predation. Nat. Rev. Microbiol. 7, 828-836 (2009).
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 828-836
    • Rodriguez-Valera, F.1
  • 37
    • 84875092761 scopus 로고    scopus 로고
    • Virus-host swinging party in the oceans: Incorporating biological complexity into paradigms of antagonistic coexistence
    • Avrani, S., Schwartz, D. A. & Lindell, D. Virus-host swinging party in the oceans: incorporating biological complexity into paradigms of antagonistic coexistence. Mob. Genet. Elements 2, 88-95 (2012).
    • (2012) Mob. Genet. Elements , vol.2 , pp. 88-95
    • Avrani, S.1    Schwartz, D.A.2    Lindell, D.3
  • 38
    • 67650682146 scopus 로고    scopus 로고
    • A single-nucleotide polymorphism in a herpesvirus DNA polymerase is sufficient to cause lethal neurological disease
    • Van de Walle, G. R. R. et al. A single-nucleotide polymorphism in a herpesvirus DNA polymerase is sufficient to cause lethal neurological disease. J. Infect. Dis. 200, 20-25 (2009).
    • (2009) J. Infect. Dis. , vol.200 , pp. 20-25
    • Van De Walle, G.R.R.1
  • 39
    • 84924091005 scopus 로고    scopus 로고
    • Evaluation of viral genome assembly and diversity estimation in deep metagenomes
    • Aguirre de Cárcer, D. et al. Evaluation of viral genome assembly and diversity estimation in deep metagenomes. BMC Genomics 15, 989 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 989
    • Aguirre De Cárcer, D.1
  • 40
    • 84962046034 scopus 로고    scopus 로고
    • Improved environmental genomes via integration of metagenomic and singlecell assemblies
    • Mende, D. R., Aylward, F. O., Eppley, J. M., Nielsen, T. N. & DeLong, E. F. Improved environmental genomes via integration of metagenomic and singlecell assemblies. Front. Microbiol. 7, 143 (2016).
    • (2016) Front. Microbiol. , vol.7 , pp. 143
    • Mende, D.R.1    Aylward, F.O.2    Eppley, J.M.3    Nielsen, T.N.4    DeLong, E.F.5
  • 41
    • 80051941010 scopus 로고    scopus 로고
    • Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli
    • Liu, J., Chen, C.-Y., Shiomi, D., Niki, H. & Margolin, W. Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli. Virology 417, 304-311 (2011).
    • (2011) Virology , vol.417 , pp. 304-311
    • Liu, J.1    Chen, C.-Y.2    Shiomi, D.3    Niki, H.4    Margolin, W.5
  • 42
    • 34247535716 scopus 로고    scopus 로고
    • Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green i
    • Patel, A. et al. Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat. Protoc. 2, 269-276 (2007).
    • (2007) Nat. Protoc. , vol.2 , pp. 269-276
    • Patel, A.1
  • 43
    • 84899507119 scopus 로고    scopus 로고
    • Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics
    • Rinke, C. et al. Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat. Protoc. 9, 1038-1048 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 1038-1048
    • Rinke, C.1
  • 44
    • 0034530892 scopus 로고    scopus 로고
    • Microbial community dynamics in Mediterranean nutrientenriched seawater mesocosms: Changes in the genetic diversity of bacterial populations
    • Schäfer, H. et al. Microbial community dynamics in Mediterranean nutrientenriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol. Ecol. 34, 243-253 (2001).
    • (2001) FEMS Microbiol. Ecol. , vol.34 , pp. 243-253
    • Schäfer, H.1
  • 46
    • 84355163060 scopus 로고    scopus 로고
    • High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
    • Martinez-Garcia, M. et al. High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J. 6, 113-123 (2012).
    • (2012) ISME J. , vol.6 , pp. 113-123
    • Martinez-Garcia, M.1
  • 47
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder, R. & Edwards, R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 27, 863-864 (2011).
    • (2011) Bioinformatics. , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 48
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich, A. et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477 (2012).
    • (2012) J. Comput. Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1
  • 49
    • 84863507534 scopus 로고    scopus 로고
    • Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    • Kearse, M. et al. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1647-1649
    • Kearse, M.1
  • 50
    • 84901337103 scopus 로고    scopus 로고
    • Common contaminants in nextgeneration sequencing that hinder discovery of low-abundance microbes
    • Laurence, M., Hatzis, C. & Brash, D. E. Common contaminants in nextgeneration sequencing that hinder discovery of low-abundance microbes. PLoS ONE 9, e97876 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e97876
    • Laurence, M.1    Hatzis, C.2    Brash, D.E.3
  • 51
    • 84930816939 scopus 로고    scopus 로고
    • ProDeGe: A computational protocol for fully automated decontamination of genomes
    • Tennessen, K. et al. ProDeGe: a computational protocol for fully automated decontamination of genomes. ISME J. 10, 269-272 (2015).
    • (2015) ISME J. , vol.10 , pp. 269-272
    • Tennessen, K.1
  • 52
    • 84866069326 scopus 로고    scopus 로고
    • Artificial neural networks trained to detect viral and phage structural proteins
    • Seguritan, V. et al. Artificial neural networks trained to detect viral and phage structural proteins. PLoS Comput. Biol. 8, e1002657 (2012).
    • (2012) PLoS Comput. Biol. , vol.8 , pp. e1002657
    • Seguritan, V.1
  • 53
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • Peng, Y., Leung, H. C. M., Yiu, S. M. & Chin, F. Y. L. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28, 1420-1428 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.M.2    Yiu, S.M.3    Chin, F.Y.L.4
  • 54
    • 84954157006 scopus 로고    scopus 로고
    • RiboFrame: An improved method for microbial taxonomy profiling from non-targeted metagenomics
    • Ramazzotti, M., Berná, L., Donati, C. & Cavalieri, D. riboFrame: an improved method for microbial taxonomy profiling from non-targeted metagenomics. Front. Genet. 6, 329 (2015).
    • (2015) Front. Genet. , vol.6 , pp. 329
    • Ramazzotti, M.1    Berná, L.2    Donati, C.3    Cavalieri, D.4
  • 55
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling, A. C. E., Mau, B., Blattner, F. R. & Perna, N. T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14, 1394-1403 (2004).
    • (2004) Genome Res. , vol.14 , pp. 1394-1403
    • Darling, A.C.E.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 56
    • 84899858221 scopus 로고    scopus 로고
    • The discovery of phiAGATE, a novel phage infecting Bacillus pumilus, leads to new insights into the phylogeny of the subfamily Spounavirinae
    • Barylski, J., Nowicki, G. & Godzicka-Jzefiak, A. The discovery of phiAGATE, a novel phage infecting Bacillus pumilus, leads to new insights into the phylogeny of the subfamily Spounavirinae. PLoS ONE 9, e86632 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e86632
    • Barylski, J.1    Nowicki, G.2    Godzicka-Jzefiak, A.3
  • 57
    • 84862503656 scopus 로고    scopus 로고
    • Gegenees: Fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups
    • Agren, J., Sundström, A., Hafström, T. & Segerman, B. Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups. PLoS ONE 7, e39107 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e39107
    • Agren, J.1    Sundström, A.2    Hafström, T.3    Segerman, B.4
  • 58
    • 33750976398 scopus 로고    scopus 로고
    • MetaGene: Prokaryotic gene finding from environmental genome shotgun sequences
    • Noguchi, H., Park, J. & Takagi, T. MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res. 34, 5623-5630 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5623-5630
    • Noguchi, H.1    Park, J.2    Takagi, T.3
  • 59
    • 40849126681 scopus 로고    scopus 로고
    • Reticulate representation of evolutionary and functional relationships between phage genomes
    • Lima-Mendez, G., Van Helden, J., Toussaint, A. & Leplae, R. Reticulate representation of evolutionary and functional relationships between phage genomes. Mol. Biol. Evol. 25, 762-777 (2008).
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 762-777
    • Lima-Mendez, G.1    Van Helden, J.2    Toussaint, A.3    Leplae, R.4
  • 60
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for largescale detection of protein families
    • Enright, A. J., Van Dongen, S. & Ouzounis, C. A. An efficient algorithm for largescale detection of protein families. Nucleic Acids Res. 30, 1575-1584 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 61
    • 85018974675 scopus 로고    scopus 로고
    • VConTACT: An iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
    • Bolduc, B. et al. vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. Peer J. 5, e3243 (2017).
    • (2017) Peer J. , vol.5 , pp. e3243
    • Bolduc, B.1
  • 62
    • 84978531930 scopus 로고    scopus 로고
    • IVirus: Facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
    • Bolduc, B., Youens-Clark, K., Roux, S., Hurwitz, B. L. & Sullivan, M. B. iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. ISME J. 11, 7-14 (2017).
    • (2017) ISME J. , vol.11 , pp. 7-14
    • Bolduc, B.1    Youens-Clark, K.2    Roux, S.3    Hurwitz, B.L.4    Sullivan, M.B.5
  • 63
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 64
    • 79955063146 scopus 로고    scopus 로고
    • Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
    • Sowell, S. M. et al. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J. 5, 856-865 (2011).
    • (2011) ISME J. , vol.5 , pp. 856-865
    • Sowell, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.