-
1
-
-
0032503986
-
Primary production of the biosphere: Integrating terrestrial and oceanic components
-
pmid: 9657713
-
C. B. Field, M. J. Behrenfeld, J. T. Randerson, P. Falkowski, Primary production of the biosphere: Integrating terrestrial and oceanic components. Science 281, 237-240 (1998). doi: 10.1126/science.281.5374.237; pmid: 9657713
-
(1998)
Science
, vol.281
, pp. 237-240
-
-
Field, C.B.1
Behrenfeld, M.J.2
Randerson, J.T.3
Falkowski, P.4
-
2
-
-
44449137093
-
The microbial engines that drive Earth's biogeochemical cycles
-
pmid: 18497287
-
P. G. Falkowski, T. Fenchel, E. F. Delong, The microbial engines that drive Earth's biogeochemical cycles. Science 320, 1034-1039 (2008). doi: 10.1126/science.1153213; pmid: 18497287
-
(2008)
Science
, vol.320
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
3
-
-
83655191021
-
Marine viruses: Truth or dare
-
pmid: 22457982
-
M. Breitbart, Marine viruses: Truth or dare. Annu. Rev. Mar. Sci. 4, 425-448 (2012). doi: 10.1146/annurev-marine-120709-142805; pmid: 22457982
-
(2012)
Annu. Rev. Mar. Sci.
, vol.4
, pp. 425-448
-
-
Breitbart, M.1
-
4
-
-
34548792911
-
Marine viruses - Major players in the global ecosystem
-
pmid: 17853907
-
C. A. Suttle, Marine viruses - major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812 (2007). doi: 10.1038/nrmicro1750; pmid: 17853907
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
5
-
-
80055082475
-
A holistic approach to marine eco-systems biology
-
pmid: 22028628
-
E. Karsenti et al., A holistic approach to marine eco-systems biology. PLOS Biol. 9, e1001177 (2011). doi: 10.1371/journal.pbio.1001177; pmid: 22028628
-
(2011)
PLOS Biol.
, vol.9
, pp. e1001177
-
-
Karsenti, E.1
-
6
-
-
84877278609
-
Sequencing platform and library preparation choices impact viral metagenomes
-
pmid: 23663384
-
S. A. Solonenko et al., Sequencing platform and library preparation choices impact viral metagenomes. BMC Genomics 14, 320 (2013). doi: 10.1186/1471-2164-14-320; pmid: 23663384
-
(2013)
BMC Genomics
, vol.14
, pp. 320
-
-
Solonenko, S.A.1
-
7
-
-
84883136726
-
Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses
-
pmid: 23635867
-
J. R. Brum, R. O. Schenck, M. B. Sullivan, Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses. ISME J. 7, 1738-1751 (2013). doi: 10.1038/ismej.2013.67; pmid: 23635867
-
(2013)
ISME J.
, vol.7
, pp. 1738-1751
-
-
Brum, J.R.1
Schenck, R.O.2
Sullivan, M.B.3
-
8
-
-
84883147815
-
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
-
pmid: 23575371
-
P. Hingamp et al., Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J. 7, 1678-1695 (2013). doi: 10.1038/ismej.2013.59; pmid: 23575371
-
(2013)
ISME J.
, vol.7
, pp. 1678-1695
-
-
Hingamp, P.1
-
9
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
-
pmid: 17355171
-
S. Yooseph et al., The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families. PLOS Biol. 5, e16 (2007). pmid: 17355171
-
(2007)
PLOS Biol.
, vol.5
, pp. e16
-
-
Yooseph, S.1
-
10
-
-
84874530236
-
The Pacific Ocean virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology
-
pmid: 23468974
-
B. L. Hurwitz, M. B. Sullivan, The Pacific Ocean virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLOS ONE 8, e57355 (2013). doi: 10.1371/journal.pone.0057355; pmid: 23468974
-
(2013)
PLOS ONE
, vol.8
, pp. e57355
-
-
Hurwitz, B.L.1
Sullivan, M.B.2
-
11
-
-
84906254581
-
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
-
pmid: 25043051
-
L. Deng et al., Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature 513, 242-245 (2014). doi: 10.1038/nature13459; pmid: 25043051
-
(2014)
Nature
, vol.513
, pp. 242-245
-
-
Deng, L.1
-
12
-
-
84870665503
-
Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline
-
pmid: 23084423
-
M. B. Duhaime, M. B. Sullivan, Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline. Virology 434, 181-186 (2012). doi: 10.1016/j.virol.2012.09.036; pmid: 23084423
-
(2012)
Virology
, vol.434
, pp. 181-186
-
-
Duhaime, M.B.1
Sullivan, M.B.2
-
13
-
-
84865720549
-
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method
-
pmid: 22713159
-
M. B. D. Duhaime, L. Deng, B. T. Poulos, M. B. Sullivan, Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method. Environ. Microbiol. 14, 2526-2537 (2012). doi: 10.1111/j.1462-2920.2012.02791.x; pmid: 22713159
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2526-2537
-
-
Duhaime, M.B.D.1
Deng, L.2
Poulos, B.T.3
Sullivan, M.B.4
-
14
-
-
84876484290
-
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
-
pmid: 22845467
-
B. L. Hurwitz, L. Deng, B. T. Poulos, M. B. Sullivan, Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environ. Microbiol. 15, 1428-1440 (2013). doi: 10.1111/j.1462-2920.2012.02836.x; pmid: 22845467
-
(2013)
Environ. Microbiol.
, vol.15
, pp. 1428-1440
-
-
Hurwitz, B.L.1
Deng, L.2
Poulos, B.T.3
Sullivan, M.B.4
-
15
-
-
79954570132
-
A simple and efficient method for concentration of ocean viruses by chemical flocculation
-
pmid: 21572525
-
S. G. John et al., A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environ. Microbiol. Rep. 3, 195-202 (2011). doi: 10.1111/j.1758-2229.2010.00208.x; pmid: 21572525
-
(2011)
Environ. Microbiol. Rep.
, vol.3
, pp. 195-202
-
-
John, S.G.1
-
16
-
-
84876490711
-
Are we missing half of the viruses in the ocean?
-
pmid: 23151645
-
G. F. Steward et al., Are we missing half of the viruses in the ocean? ISME J. 7, 672-679 (2013). doi: 10.1038/ismej.2012.121; pmid: 23151645
-
(2013)
ISME J.
, vol.7
, pp. 672-679
-
-
Steward, G.F.1
-
17
-
-
84856148335
-
Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains
-
pmid: 22138992
-
K. Holmfeldt, D. Odić, M. B. Sullivan, M. Middelboe, L. Riemann, Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains. Appl. Environ. Microbiol. 78, 892-894 (2012). doi: 10.1128/AEM.06580-11; pmid: 22138992
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 892-894
-
-
Holmfeldt, K.1
Odić, D.2
Sullivan, M.B.3
Middelboe, M.4
Riemann, L.5
-
18
-
-
33847797188
-
Flow cytometric detection and enumeration of DNA and RNA viruses infecting marine eukaryotic microalgae
-
Y. Tomaru, K. Nagasaki, Flow cytometric detection and enumeration of DNA and RNA viruses infecting marine eukaryotic microalgae. J. Oceanogr. 63, 215-221 (2007). doi: 10.1007/s10872-007-0023-8
-
(2007)
J. Oceanogr.
, vol.63
, pp. 215-221
-
-
Tomaru, Y.1
Nagasaki, K.2
-
19
-
-
0033983437
-
Flow cytometric detection of viruses
-
pmid: 10716350
-
C. P. D. Brussaard, D. Marie, G. Bratbak, Flow cytometric detection of viruses. J. Virol. Methods 85, 175-182 (2000). doi: 10.1016/S0166-0934(99)00167-6; pmid: 10716350
-
(2000)
J. Virol. Methods
, vol.85
, pp. 175-182
-
-
Brussaard, C.P.D.1
Marie, D.2
Bratbak, G.3
-
20
-
-
0034048220
-
A comparison of methods for counting viruses in aquatic systems
-
pmid: 10831400
-
Y. Bettarel, T. Sime-Ngando, C. Amblard, H. Laveran, A comparison of methods for counting viruses in aquatic systems. Appl. Environ. Microbiol. 66, 2283-2289 (2000). doi: 10.1128/AEM.66.6.2283-2289.2000; pmid: 10831400
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2283-2289
-
-
Bettarel, Y.1
Sime-Ngando, T.2
Amblard, C.3
Laveran, H.4
-
21
-
-
0028861191
-
Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy
-
K. P. Hennes, C. A. Suttle, Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy. Limnol. Oceanogr. 40, 1050-1055 (1995). doi: 10.4319/lo.1995.40.6.1050
-
(1995)
Limnol. Oceanogr.
, vol.40
, pp. 1050-1055
-
-
Hennes, K.P.1
Suttle, C.A.2
-
22
-
-
0001756771
-
Comparison of epifluorescence and transmission electron microscopy for counting viruses in natural marine waters
-
M. G. Weinbauer, C. A. Suttle, Comparison of epifluorescence and transmission electron microscopy for counting viruses in natural marine waters. Aquat. Microb. Ecol. 13, 225-232 (1997). doi: 10.3354/ame013225
-
(1997)
Aquat. Microb. Ecol.
, vol.13
, pp. 225-232
-
-
Weinbauer, M.G.1
Suttle, C.A.2
-
23
-
-
0001679973
-
Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria
-
R. T. Noble, J. A. Fuhrman, Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14, 113-118 (1998). doi: 10.3354/ame014113
-
(1998)
Aquat. Microb. Ecol.
, vol.14
, pp. 113-118
-
-
Noble, R.T.1
Fuhrman, J.A.2
-
24
-
-
0032960484
-
Enumeration of marine viruses in culture and natural samples by flow cytometry
-
pmid: 9872758
-
D. Marie, C. P. D. Brussaard, R. Thyrhaug, G. Bratbak, D. Vaulot, Enumeration of marine viruses in culture and natural samples by flow cytometry. Appl. Environ. Microbiol. 65, 45-52 (1999).pmid: 9872758
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 45-52
-
-
Marie, D.1
Brussaard, C.P.D.2
Thyrhaug, R.3
Bratbak, G.4
Vaulot, D.5
-
25
-
-
84929992013
-
Structure and function of the global ocean microbiome
-
S. Sunagawa, Structure and function of the global ocean microbiome. Science 348, 1261359 (2015).
-
(2015)
Science
, vol.348
, pp. 1261359
-
-
Sunagawa, S.1
-
26
-
-
84873563756
-
Orthologous gene clusters and taxon signature genes for viruses of prokaryotes
-
pmid: 23222723
-
D. M. Kristensen et al., Orthologous gene clusters and taxon signature genes for viruses of prokaryotes. J. Bacteriol. 195, 941-950 (2013). doi: 10.1128/JB.01801-12; pmid: 23222723
-
(2013)
J. Bacteriol.
, vol.195
, pp. 941-950
-
-
Kristensen, D.M.1
-
27
-
-
84885949137
-
The global virome: Not as big as we thought?
-
pmid: 23896279
-
J. C. Ignacio-Espinoza, S. A. Solonenko, M. B. Sullivan, The global virome: Not as big as we thought? Curr. Opin. Virol. 3, 566-571 (2013). doi: 10.1016/j.coviro.2013.07.004; pmid: 23896279
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 566-571
-
-
Ignacio-Espinoza, J.C.1
Solonenko, S.A.2
Sullivan, M.B.3
-
28
-
-
84921568760
-
Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome
-
pmid: 25093636
-
B. L. Hurwitz, J. R. Brum, M. B. Sullivan, Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome. ISME J. 9, 472-484 (2015). doi: 10.1038/ismej.2014.143; pmid: 25093636
-
ISME J.
, vol.9
, Issue.2015
, pp. 472-484
-
-
Hurwitz, B.L.1
Brum, J.R.2
Sullivan, M.B.3
-
29
-
-
77956188953
-
Global patterns and predictors of marine biodiversity across taxa
-
pmid: 20668450
-
D. P. Tittensor et al., Global patterns and predictors of marine biodiversity across taxa. Nature 466, 1098-1101 (2010). doi: 10.1038/nature09329; pmid: 20668450
-
(2010)
Nature
, vol.466
, pp. 1098-1101
-
-
Tittensor, D.P.1
-
30
-
-
84873437771
-
Marine bacteria exhibit a bipolar distribution
-
pmid: 23324742
-
W. J. Sul, T. A. Oliver, H. W. Ducklow, L. A. Amaral-Zettler, M. L. Sogin, Marine bacteria exhibit a bipolar distribution. Proc. Natl. Acad. Sci. U.S.A. 110, 2342-2347 (2013). doi: 10.1073/pnas.1212424110; pmid: 23324742
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 2342-2347
-
-
Sul, W.J.1
Oliver, T.A.2
Ducklow, H.W.3
Amaral-Zettler, L.A.4
Sogin, M.L.5
-
31
-
-
44449097007
-
A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities
-
pmid: 18362337
-
D. I. Jarvis et al., A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities. Proc. Natl. Acad. Sci. U.S.A. 105, 5326-5331 (2008). doi: 10.1073/pnas.0800607105; pmid: 18362337
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 5326-5331
-
-
Jarvis, D.I.1
-
33
-
-
84923568014
-
Rising to the challenge: Accelerated pace of discovery transforms marine virology
-
pmid: 25639680
-
J. R. Brum, M. B. Sullivan, Rising to the challenge: Accelerated pace of discovery transforms marine virology. Nat. Rev. Microbiol. 13, 147-159 (2015). doi: 10.1038/nrmicro3404; pmid: 25639680
-
Nat. Rev. Microbiol.
, vol.13
, Issue.2015
, pp. 147-159
-
-
Brum, J.R.1
Sullivan, M.B.2
-
34
-
-
84929996994
-
Global oceans eukaryotic plankton diversity
-
C. de Vargas et al., Global oceans eukaryotic plankton diversity. Science 348, 1261605 (2015).
-
(2015)
Science
, vol.348
, pp. 1261605
-
-
De Vargas, C.1
-
35
-
-
84880693152
-
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
-
pmid: 23798439
-
I. Kang, H.-M. Oh, D. Kang, J.-C. Cho, Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans. Proc. Natl. Acad. Sci. U.S.A. 110, 12343-12348 (2013). doi: 10.1073/pnas.1219930110; pmid: 23798439
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 12343-12348
-
-
Kang, I.1
Oh, H.-M.2
Kang, D.3
Cho, J.-C.4
-
36
-
-
84876489323
-
Genomes of marine cyanopodoviruses reveal multiple origins of diversity
-
pmid: 23320838
-
S. J. Labrie et al., Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environ. Microbiol. 15, 1356-1376 (2013). doi: 10.1111/1462-2920.12053; pmid: 23320838
-
(2013)
Environ. Microbiol.
, vol.15
, pp. 1356-1376
-
-
Labrie, S.J.1
-
37
-
-
78249280297
-
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
-
pmid: 20662890
-
M. B. Sullivan et al., Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ. Microbiol. 12, 3035-3056 (2010). doi: 10.1111/j.1462-2920.2010.02280.x; pmid: 20662890
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 3035-3056
-
-
Sullivan, M.B.1
-
38
-
-
84874193410
-
Abundant SAR11 viruses in the ocean
-
pmid: 23407494
-
Y. Zhao et al., Abundant SAR11 viruses in the ocean. Nature 494, 357-360 (2013). doi: 10.1038/nature11921; pmid: 23407494
-
(2013)
Nature
, vol.494
, pp. 357-360
-
-
Zhao, Y.1
-
39
-
-
0034111671
-
The complete genomic sequence of the marine phage Roseaphage SIO1 shares homology with nonmarine phages
-
F. Rohwer et al., The complete genomic sequence of the marine phage Roseaphage SIO1 shares homology with nonmarine phages. Limnol. Oceanogr. 45, 408-418 (2000). doi: 10.4319/lo.2000.45.2.0408
-
(2000)
Limnol. Oceanogr.
, vol.45
, pp. 408-418
-
-
Rohwer, F.1
-
40
-
-
84922964128
-
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
-
pmid: 25171894
-
S. Roux et al., Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics. eLife 3, e03125 (2014). doi: 10.7554/eLife.03125; pmid: 25171894
-
(2014)
ELife
, vol.3
, pp. e03125
-
-
Roux, S.1
-
41
-
-
84892736640
-
Expanding the marine virosphere using metagenomics
-
pmid: 24348267
-
C. M. Mizuno, F. Rodriguez-Valera, N. E. Kimes, R. Ghai, Expanding the marine virosphere using metagenomics. PLOS Genet. 9, e1003987 (2013). doi: 10.1371/journal.pgen.1003987; pmid: 24348267
-
(2013)
PLOS Genet.
, vol.9
, pp. e1003987
-
-
Mizuno, C.M.1
Rodriguez-Valera, F.2
Kimes, N.E.3
Ghai, R.4
-
42
-
-
84904624132
-
Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
-
pmid: 25002514
-
B. L. Hurwitz, A. H. Westveld, J. R. Brum, M. B. Sullivan, Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses. Proc. Natl. Acad. Sci. U.S.A. 111, 10714-10719 (2014). doi: 10.1073/pnas.1319778111; pmid: 25002514
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 10714-10719
-
-
Hurwitz, B.L.1
Westveld, A.H.2
Brum, J.R.3
Sullivan, M.B.4
-
43
-
-
77949408671
-
Virus-host interactions in environments with a wide range of ionic strengths
-
pmid: 23765723
-
P. Kukkaro, D. H. Bamford, Virus-host interactions in environments with a wide range of ionic strengths. Environ. Microbiol. Rep. 1, 71-77 (2009). doi: 10.1111/j.1758-2229.2008.00007.x; pmid: 23765723
-
(2009)
Environ. Microbiol. Rep.
, vol.1
, pp. 71-77
-
-
Kukkaro, P.1
Bamford, D.H.2
-
44
-
-
0034053843
-
Virioplankton: Viruses in aquatic ecosystems
-
pmid: 10704475
-
K. E. Wommack, R. R. Colwell, Virioplankton: Viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64, 69-114 (2000). doi: 10.1128/MMBR.64.1.69-114.2000; pmid: 10704475
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
45
-
-
84920694495
-
Emerging methods to study bacteriophage infection at the single-cell level
-
V. Dang, M. B. Sullivan, Emerging methods to study bacteriophage infection at the single-cell level. Front. Microbiol. 5, 724 (2014).
-
(2014)
Front. Microbiol.
, vol.5
, pp. 724
-
-
Dang, V.1
Sullivan, M.B.2
-
46
-
-
84905891839
-
-
Elsevier, Boston, ed. 6
-
L. D. Talley, G. L. Pickard, W. J. Emery, J. H. Swift, Descriptive Physical Oceanography: An Introduction (Elsevier, Boston, ed. 6, 2011).
-
(2011)
Descriptive Physical Oceanography: An Introduction
-
-
Talley, L.D.1
Pickard, G.L.2
Emery, W.J.3
Swift, J.H.4
-
47
-
-
46149136818
-
Rings of the Agulhas current
-
D. B. Olson, R. H. Evans, Rings of the Agulhas current. Deep Sea Res. Pt. I 33, 27-42 (1986). doi: 10.1016/0198-0149(86)90106-8
-
(1986)
Deep Sea Res. Pt. I
, vol.33
, pp. 27-42
-
-
Olson, D.B.1
Evans, R.H.2
-
48
-
-
84929993120
-
Dispersal and remodeling of plankton communities by Agulhas rings
-
E. Villar, Dispersal and remodeling of plankton communities by Agulhas rings. Science 348, 1261447 (2015).
-
(2015)
Science
, vol.348
, pp. 1261447
-
-
Villar, E.1
-
49
-
-
20344382957
-
Here a virus, there a virus, everywhere the same virus?
-
pmid: 15936660
-
M. Breitbart, F. Rohwer, Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13, 278-284 (2005). doi: 10.1016/j.tim.2005.04.003; pmid: 15936660
-
(2005)
Trends Microbiol.
, vol.13
, pp. 278-284
-
-
Breitbart, M.1
Rohwer, F.2
-
50
-
-
84929997716
-
Top-down determinants of ocean microbial community structure
-
G. Lima-Mendez et al., Top-down determinants of ocean microbial community structure. Science 348, 1262073 (2015).
-
(2015)
Science
, vol.348
, pp. 1262073
-
-
Lima-Mendez, G.1
-
51
-
-
84880922997
-
Short-term observations of marine bacterial and viral communities: Patterns, connections and resilience
-
pmid: 23446831
-
D. M. Needham et al., Short-term observations of marine bacterial and viral communities: Patterns, connections and resilience. ISME J. 7, 1274-1285 (2013). doi: 10.1038/ismej.2013.19; pmid: 23446831
-
(2013)
ISME J.
, vol.7
, pp. 1274-1285
-
-
Needham, D.M.1
-
52
-
-
84899409844
-
Top-down controls on bacterial community structure: Microbial network analysis of bacteria, T4-like viruses and protists
-
pmid: 24196323
-
C.-E. T. Chow, D. Y. Kim, R. Sachdeva, D. A. Caron, J. A. Fuhrman, Top-down controls on bacterial community structure: Microbial network analysis of bacteria, T4-like viruses and protists. ISME J. 8, 816-829 (2014). doi: 10.1038/ismej.2013.199; pmid: 24196323
-
(2014)
ISME J.
, vol.8
, pp. 816-829
-
-
Chow, C.-E.T.1
Kim, D.Y.2
Sachdeva, R.3
Caron, D.A.4
Fuhrman, J.A.5
-
55
-
-
85178558388
-
-
O. Wurl, Eds. CRC Press, Boca Raton, FL
-
A. Aminot, R. Kerouel, S. C. Coverly, in Practical Guidelines for the Analysis of Seawater, O. Wurl, Eds. (CRC Press, Boca Raton, FL, 2009), pp. 143-178.
-
(2009)
Practical Guidelines for the Analysis of Seawater
, pp. 143-178
-
-
Aminot, A.1
Kerouel, R.2
Coverly In, S.C.3
-
56
-
-
40749089558
-
Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: Comparison between in situ and predicted data
-
J. Ras, H. Claustre, J. Uitz, Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: Comparison between in situ and predicted data. Biogeosciences 5, 353-369 (2008). doi: 10.5194/bg-5-353-2008
-
(2008)
Biogeosciences
, vol.5
, pp. 353-369
-
-
Ras, J.1
Claustre, H.2
Uitz, J.3
-
57
-
-
0035936994
-
Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments
-
pmid: 11263574
-
L. Van Heukelem, C. S. Thomas, Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments. J. Chromatogr. A 910, 31-49 (2001). doi: 10.1016/S0378-4347(00)00603-4; pmid: 11263574
-
(2001)
J. Chromatogr.
, vol.910
, pp. 31-49
-
-
Van Heukelem, L.1
Thomas, C.S.2
-
58
-
-
0033865159
-
Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities
-
J. M. Gasol, P. A. del Giorgio, Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci. Mar. 64, 197-224 (2000).
-
(2000)
Sci. Mar.
, vol.64
, pp. 197-224
-
-
Gasol, J.M.1
Del Giorgio, P.A.2
-
60
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
pmid: 23222524
-
S. Schloissnig et al., Genomic variation landscape of the human gut microbiome. Nature 493, 45-50 (2013). doi: 10.1038/nature11711; pmid: 23222524
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
-
61
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
pmid: 23587118
-
R. Luo et al., SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler. GigaScience 1, 18 (2012). doi: 10.1186/2047-217X-1-18; pmid: 23587118
-
(2012)
GigaScience
, vol.1
, pp. 18
-
-
Luo, R.1
-
62
-
-
84867634981
-
MOCAT: A metagenomics assembly and gene prediction toolkit
-
pmid: 23082188
-
J. R. Kultima et al., MOCAT: A metagenomics assembly and gene prediction toolkit. PLOS ONE 7, e47656 (2012). doi: 10.1371/journal.pone.0047656; pmid: 23082188
-
(2012)
PLOS ONE
, vol.7
, pp. e47656
-
-
Kultima, J.R.1
-
63
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identification
-
pmid: 20211023
-
D. Hyatt et al., Prodigal: Prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119 (2010). doi: 10.1186/1471-2105-11-119; pmid: 20211023
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.119
-
-
Hyatt, D.1
-
64
-
-
84897526477
-
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
-
pmid: 24335607
-
S. Roux, M. Krupovic, D. Debroas, P. Forterre, F. Enault, Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences. Open Biol. 3, 130160 (2013). doi: 10.1098/rsob.130160; pmid: 24335607
-
(2013)
Open Biol.
, vol.3
, pp. 130160
-
-
Roux, S.1
Krupovic, M.2
Debroas, D.3
Forterre, P.4
Enault, F.5
-
65
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
pmid: 21593126
-
R. D. Finn, J. Clements, S. R. Eddy, HMMER web server: Interactive sequence similarity searching. Nucleic Acids Res. 39 (suppl), W29-W37 (2011). doi: 10.1093/nar/gkr367; pmid: 21593126
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
66
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
pmid: 22388286
-
B. Langmead, S. L. Salzberg, Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012). doi: 10.1038/nmeth.1923; pmid: 22388286
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
69
-
-
78650862532
-
Fast stable restricted maximum and marginal likellihood estimation of semiparametric generalized linear models
-
S. N. Wood, Fast stable restricted maximum and marginal likellihood estimation of semiparametric generalized linear models. J. R. Stat. Soc. Series B Stat. Methodol. 73, 3-36 (2011). doi: 10.1111/j.1467-9868.2010.00749.x
-
(2011)
J. R. Stat. Soc. Series B Stat. Methodol.
, vol.73
, pp. 3-36
-
-
Wood, S.N.1
|