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Volumn 9, Issue 1, 2014, Pages

The discovery of phiAGATE, a novel phage infecting Bacillus pumilus, leads to new insights into the phylogeny of the subfamily Spounavirinae

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLUS PHAGE PHIAGATE; BACILLUS PUMILUS; BACTERIOPHAGE; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; DNA SEQUENCE; GENOME ANALYSIS; MOLECULAR DYNAMICS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; SEQUENCE ANALYSIS; SPOUNALIKEVIRUS; TAXONOMIC IDENTIFICATION; TWORTLIKEVIRUS; VIRUS; VIRUS ATTACHMENT; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS MORPHOLOGY; VIRUS REPLICATION;

EID: 84899858221     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0086632     Document Type: Article
Times cited : (30)

References (101)
  • 2
    • 70449380104 scopus 로고    scopus 로고
    • Classification of Myoviridae bacteriophages using protein sequence similarity
    • Lavigne R, Darius P, Summer EJ, Seto D, Mahadevan P, et al. (2009) Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol. 9: 224.
    • (2009) BMC Microbiol , vol.9 , pp. 224
    • Lavigne, R.1    Darius, P.2    Summer, E.J.3    Seto, D.4    Mahadevan, P.5
  • 4
    • 37249003841 scopus 로고    scopus 로고
    • Isolation and characterization of a novel Enterococcus faecalis bacteriophage phiEF24C as a therapeutic candidate
    • Uchiyama J, Rashel M, Maeda Y, Takemura I, Sugihara S, et al. (2008) Isolation and characterization of a novel Enterococcus faecalis bacteriophage phiEF24C as a therapeutic candidate. FEMS Microbiol Lett. 278.
    • (2008) FEMS Microbiol Lett , pp. 278
    • Uchiyama, J.1    Rashel, M.2    Maeda, Y.3    Takemura, I.4    Sugihara, S.5
  • 5
    • 0017851842 scopus 로고
    • Terminal redundancy of "high frequency of recombination" markers of Bacillus subtilis phage SPO1
    • Cregg JM, Stewart CR (1978) Terminal redundancy of "high frequency of recombination" markers of Bacillus subtilis phage SPO1. Virology. 86.
    • (1978) Virology , pp. 86
    • Cregg, J.M.1    Stewart, C.R.2
  • 6
    • 62449181292 scopus 로고    scopus 로고
    • Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions
    • Casjens SR, Gilcrease EB (2009) Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. Methods Mol Biol. 502: 91-111.
    • (2009) Methods Mol Biol , vol.502 , pp. 91-111
    • Casjens, S.R.1    Gilcrease, E.B.2
  • 8
    • 17044437752 scopus 로고    scopus 로고
    • The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
    • Apr 5
    • Kwan T, Liu J, DuBow M, Gros P, Pelletier J (2005) The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci USA. Apr 5; 102(14): 5174-9.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.14 , pp. 5174-5179
    • Kwan, T.1    Liu, J.2    DuBow, M.3    Gros, P.4    Pelletier, J.5
  • 9
    • 50249163139 scopus 로고    scopus 로고
    • The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: A model for the SPO1-like myoviruses of gram-positive bacteria
    • Klumpp J, Dorscht J, Lurz R, Bielmann R, Wieland M, et al. (2008) The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria. J Bacteriol. 190(17): 5753-65.
    • (2008) J Bacteriol , vol.190 , Issue.17 , pp. 5753-5765
    • Klumpp, J.1    Dorscht, J.2    Lurz, R.3    Bielmann, R.4    Wieland, M.5
  • 11
    • 46949111817 scopus 로고    scopus 로고
    • In silico and in vivo evaluation of bacteriophage phiEF24C, a candidate for treatment of Enterococcus faecalis infections
    • DOI 10.1128/AEM.02371-07
    • Uchiyama J, Rashel M, Takemura I, Wakiguchi H, Matsuzaki S (2008) In silico and in vivo evaluation of bacteriophage phiEF24C, a candidate for treatment of Enterococcus faecalis infections. Appl Environ Microbiol. 74(13): 4149-63. (Pubitemid 351962441)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.13 , pp. 4149-4163
    • Uchiyama, J.1    Rashel, M.2    Takemura, I.3    Wakiguchi, H.4    Matsuzaki, S.5
  • 14
    • 84857745267 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2012) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40 (Database issue): D13-25.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE ISSUE
    • Sayers, E.W.1    Barrett, T.2    Benson, D.A.3    Bolton, E.4    Bryant, S.H.5
  • 16
    • 73149099402 scopus 로고    scopus 로고
    • Isolation of a novel strain of Bacillus pumilus from penaeid shrimp that is inhibitory against marine pathogens
    • Hill JE, Baiano JC, Barnes AC (2009) Isolation of a novel strain of Bacillus pumilus from penaeid shrimp that is inhibitory against marine pathogens. J Fish Dis. 32(12): 1007-16.
    • (2009) J Fish Dis , vol.32 , Issue.12 , pp. 1007-1016
    • Hill, J.E.1    Baiano, J.C.2    Barnes, A.C.3
  • 18
    • 57549117102 scopus 로고    scopus 로고
    • Growth promotion of the freshwater microalga Chlorella vulgaris by the nitrogen-fixing, plant growth-promoting bacterium Bacillus pumilus from arid zone soils
    • Hernandez JP, de-Bashan LE, Rodriguez DJ, Rodriguez Y, Bashan Y (2009) Growth promotion of the freshwater microalga Chlorella vulgaris by the nitrogen-fixing, plant growth-promoting bacterium Bacillus pumilus from arid zone soils. Eur. J. Soil Biol. 45(1): 88-93.
    • (2009) Eur. J. Soil Biol. , vol.45 , Issue.1 , pp. 88-93
    • Hernandez, J.P.1    De-Bashan, L.E.2    Rodriguez, D.J.3    Rodriguez, Y.4    Bashan, Y.5
  • 19
    • 0642287830 scopus 로고    scopus 로고
    • Isolation and identification of N2-fixing strains of Bacillus in rice rhizosphere of the Yangtze River Valley
    • Article in Chinese
    • Xie G, Su B, Cui Z (1998) Isolation and identification of N2-fixing strains of Bacillus in rice rhizosphere of the Yangtze River Valley (Article in Chinese). Wei Sheng Wu Xue Bao. 38(6): 480-3.
    • (1998) Wei Sheng Wu Xue Bao , vol.38 , Issue.6 , pp. 480-483
    • Xie, G.1    Su, B.2    Cui, Z.3
  • 23
    • 1842535259 scopus 로고    scopus 로고
    • Growth promotion of red pepper plug seedlings and the production of gibberellins by Bacillus cereus, Bacillus macroides and Bacillus pumilus
    • Joo GJ, Kim YM, Lee IJ, Song KS, Rhee IK (2004) Growth promotion of red pepper plug seedlings and the production of gibberellins by Bacillus cereus, Bacillus macroides and Bacillus pumilus. Biotechnol Lett. 26(6): 487-91.
    • (2004) Biotechnol Lett , vol.26 , Issue.6 , pp. 487-491
    • Joo, G.J.1    Kim, Y.M.2    Lee, I.J.3    Song, K.S.4    Rhee, I.K.5
  • 24
    • 84860881236 scopus 로고    scopus 로고
    • Bacillus pumilus, a new pathogen on mango plants
    • Galal AA, El-Bana AA, Janse J (2006) Bacillus pumilus, a new pathogen on mango plants. Egypt J Phytopathol. 34(1): 17-29.
    • (2006) Egypt J Phytopathol , vol.34 , Issue.1 , pp. 17-29
    • Galal, A.A.1    El-Bana, A.A.2    Janse, J.3
  • 25
    • 33845762740 scopus 로고    scopus 로고
    • Screening and mutagenesis of a novel Bacillus pumilus strain producing alkaline protease for dehairing
    • DOI 10.1111/j.1472-765X.2006.02039.x
    • Wang HY, Liu DM, Liu Y, Cheng CF, Ma QY, et al. (2007) Screening and mutagenesis of a novel Bacillus pumilus strain producing alkaline protease for dehairing. Lett Appl Microbiol. 44(1): 1-6. (Pubitemid 44973961)
    • (2007) Letters in Applied Microbiology , vol.44 , Issue.1 , pp. 1-6
    • Wang, H.Y.1    Liu, D.M.2    Liu, Y.3    Cheng, C.F.4    Ma, Q.Y.5    Huang, Q.6    Zhang, Y.Z.7
  • 26
    • 84855239162 scopus 로고    scopus 로고
    • The overexpression of the SAPB of Bacillus pumilus CBS and mutated sapB-L31I/T33S/N99Y alkaline proteases in Bacillus subtilis DB430: New attractive properties for the mutant enzyme
    • Jaouadi NZ, Jaouadi B, Aghajari N, Bejar S (2012) The overexpression of the SAPB of Bacillus pumilus CBS and mutated sapB-L31I/T33S/N99Y alkaline proteases in Bacillus subtilis DB430: new attractive properties for the mutant enzyme. Bioresour Technol. 105: 142-51.
    • (2012) Bioresour Technol , vol.105 , pp. 142-151
    • Jaouadi, N.Z.1    Jaouadi, B.2    Aghajari, N.3    Bejar, S.4
  • 27
    • 76949088827 scopus 로고    scopus 로고
    • Production and optimization of cellulase-free, alkali-stable xylanase by Bacillus pumilus SV-85S in submerged fermentation
    • Nagar S, Gupta VK, Kumar D, Kumar L, Kuhad RC (2010) Production and optimization of cellulase-free, alkali-stable xylanase by Bacillus pumilus SV-85S in submerged fermentation. J Ind Microbiol Biotechnol. 37(1): 71-83.
    • (2010) J Ind Microbiol Biotechnol , vol.37 , Issue.1 , pp. 71-83
    • Nagar, S.1    Gupta, V.K.2    Kumar, D.3    Kumar, L.4    Kuhad, R.C.5
  • 28
    • 77955661921 scopus 로고    scopus 로고
    • Application of cellulase-free xylano-pectinolytic enzymes from the same bacterial isolate in biobleaching of kraft pulp
    • Kaur A, Mahajan R, Singh A, Garg G, Sharma J (2010) Application of cellulase-free xylano-pectinolytic enzymes from the same bacterial isolate in biobleaching of kraft pulp. Bioresour Technol. 101.
    • (2010) Bioresour Technol , pp. 101
    • Kaur, A.1    Mahajan, R.2    Singh, A.3    Garg, G.4    Sharma, J.5
  • 29
    • 34648814378 scopus 로고    scopus 로고
    • Pumilicin 4, a novel bacteriocin with anti-MRSA and Anti-VRE activity produced by newly isolated bacteria Bacillus pumilus strain WAPB4
    • DOI 10.1007/s00284-006-0632-2
    • Aunpad R, Na-Bangchang K (2007) Pumilicin 4, a novel bacteriocin with anti-MRSA and anti-VRE activity produced by newly isolated bacteria Bacillus pumilus strain WAPB4. Curr Microbiol. 55(4): 308-13. (Pubitemid 47460529)
    • (2007) Current Microbiology , vol.55 , Issue.4 , pp. 308-313
    • Aunpad, R.1    Na-Bangchang, K.2
  • 30
    • 77953542754 scopus 로고    scopus 로고
    • Bacillus pumilus of Palk Bay origin inhibits quorum-sensing-mediated virulence factors in Gram-negative bacteria
    • Nithya C, Aravindraja C, Pandian SK (2010) Bacillus pumilus of Palk Bay origin inhibits quorum-sensing-mediated virulence factors in Gram-negative bacteria. Res Microbiol. 161(4): 293-304.
    • (2010) Res Microbiol , vol.161 , Issue.4 , pp. 293-304
    • Nithya, C.1    Aravindraja, C.2    Pandian, S.K.3
  • 31
    • 80053296193 scopus 로고    scopus 로고
    • A novel compound from the marine bacterium Bacillus pumilus S6-15 inhibits biofilm formation in Gram-positive and Gram-negative species
    • Nithya C, Devi MG, Karutha Pandian S (2011) A novel compound from the marine bacterium Bacillus pumilus S6-15 inhibits biofilm formation in Gram-positive and Gram-negative species. Biofouling. 27(5): 519-28.
    • (2011) Biofouling , vol.27 , Issue.5 , pp. 519-528
    • Nithya, C.1    Devi, M.G.2    Karutha Pandian, S.3
  • 33
    • 33947113822 scopus 로고    scopus 로고
    • Food poisoning associated with pumilacidin-producing Bacillus pumilus in rice
    • DOI 10.1016/j.ijfoodmicro.2006.11.005, PII S0168160507000359
    • From C, Hormazabal V, Granum PE (2007) Food poisoning associated with pumilacidin-producing Bacillus pumilus in rice. Int J Food Microbiol. 115(3): 319-24. (Pubitemid 46400880)
    • (2007) International Journal of Food Microbiology , vol.115 , Issue.3 , pp. 319-324
    • From, C.1    Hormazabal, V.2    Granum, P.E.3
  • 35
    • 0018089246 scopus 로고
    • Sporulation-converting bacteriophages for Bacillus pumilus
    • Keggins KM, Nauman RK, Lovett PS (1978) Sporulation-converting bacteriophages for Bacillus pumilus. J Virol. 27(3): 819-22. (Pubitemid 9009124)
    • (1978) Journal of Virology , vol.27 , Issue.3 , pp. 819-822
    • Keggins, K.M.1    Nauman, R.K.2    Lovett, P.S.3
  • 36
    • 0015951739 scopus 로고
    • Some properties of the PBP1 transduction system in Bacillus pumilus
    • Lovett PS, Bramucci D, Bramucci MG, Burdick BD (1974) Some properties of the PBP1 transduction system in Bacillus pumilus. J Virol. 13(1): 81-4.
    • (1974) J Virol , vol.13 , Issue.1 , pp. 81-84
    • Lovett, P.S.1    Bramucci, D.2    Bramucci, M.G.3    Burdick, B.D.4
  • 38
    • 84899850205 scopus 로고
    • Characterization of two bacteriophages for Bacillus pumilus. The virulent phage 31 and the temperate phage NP-5
    • Imai K (1969) Characterization of two bacteriophages for Bacillus pumilus. The virulent phage 31 and the temperate phage NP-5. IFO Res. Commun. 14: 5.
    • (1969) IFO Res. Commun. , vol.14 , pp. 5
    • Imai, K.1
  • 40
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
    • Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17.
    • (1989) Nucleic Acids Res , pp. 17
    • Edwards, U.1    Rogall, T.2    Blöcker, H.3    Emde, M.4    Böttger, E.C.5
  • 41
    • 0033166540 scopus 로고    scopus 로고
    • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
    • Turner S, Pryer KM, Miao VP, Palmer JD (1999) Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol. 46(4): 327-38. (Pubitemid 29400753)
    • (1999) Journal of Eukaryotic Microbiology , vol.46 , Issue.4 , pp. 327-338
    • Turner, S.1    Pryer, K.M.2    Miao, V.P.W.3    Palmer, J.D.4
  • 42
    • 0021213774 scopus 로고
    • Identification of Bacillus strains using the API system
    • Logan NA, Berkeley RC (1984) Identification of Bacillus strains using the API system. J Gen Microbiol. 130(7): 1871-82. (Pubitemid 14058805)
    • (1984) Journal of General Microbiology , vol.130 , Issue.7 , pp. 1871-1882
    • Logan, N.A.1    Berkeley, R.C.W.2
  • 43
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 20(18): 3551-67. (Pubitemid 30007252)
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 44
    • 79960598316 scopus 로고    scopus 로고
    • A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes
    • Budinoff CR, Loar SN, LeCleir GR, Wilhelm SW, Buchan A (2011) A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes. BMC Microbiol. 11: 168.
    • (2011) BMC Microbiol , vol.11 , pp. 168
    • Budinoff, C.R.1    Loar, S.N.2    LeCleir, G.R.3    Wilhelm, S.W.4    Buchan, A.5
  • 45
    • 56049086102 scopus 로고    scopus 로고
    • Isolation and characterization of a T7-like lytic phage for Pseudomonas fluorescens
    • Sillankorva S, Neubauer P, Azeredo J (2008) Isolation and characterization of a T7-like lytic phage for Pseudomonas fluorescens. BMC Biotechnol. 8: 80.
    • (2008) BMC Biotechnol , vol.8 , pp. 80
    • Sillankorva, S.1    Neubauer, P.2    Azeredo, J.3
  • 46
    • 56049123048 scopus 로고
    • The effect of chemical and physical agents on the phage receptor of Phase II Shigella sonnei
    • Barry GT, Goebel WF (1951) The effect of chemical and physical agents on the phage receptor of Phase II Shigella sonnei. J Exp Med. 94(5): 387-400.
    • (1951) J Exp Med , vol.94 , Issue.5 , pp. 387-400
    • Barry, G.T.1    Goebel, W.F.2
  • 47
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • DOI 10.1093/nar/26.4.1107
    • Lukashin AV, Borodovsky M (1998) GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26(4): 1107-15. (Pubitemid 28291669)
    • (1998) Nucleic Acids Research , vol.26 , Issue.4 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 48
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • DOI 10.1093/bioinformatics/btm009
    • Delcher AL, Bratke KA, Powers EC, Salzberg SL (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 23(6): 673-9. (Pubitemid 46554717)
    • (2007) Bioinformatics , vol.23 , Issue.6 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 49
    • 0032944241 scopus 로고    scopus 로고
    • INFOGENE: A database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects
    • DOI 10.1093/nar/27.1.248
    • Solovyev VV, Salamov AA (1999) INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects. Nucleic Acids Res. 27(1): 248-50. (Pubitemid 29209451)
    • (1999) Nucleic Acids Research , vol.27 , Issue.1 , pp. 248-250
    • Solovyev, V.V.1    Salamov, A.A.2
  • 50
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: Rapid annotations using subsystems technology
    • Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 9: 75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1    Bartels, D.2    Best, A.A.3    DeJongh, M.4    Disz, T.5
  • 51
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - An integration platform for the signature-recognition methods in InterPro
    • Zdobnov EM, Apweiler R (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 17(9): 847-8. (Pubitemid 32970486)
    • (2001) Bioinformatics , vol.17 , Issue.9 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 52
    • 84899822580 scopus 로고    scopus 로고
    • Biomatters Ltd. Available: Accessed 01.01.2013
    • Biomatters Ltd. (2012) Geneious 6.0.5. Available: http://www.geneious. com/. Accessed 01.01.2013.
    • (2012) Geneious 6.0.5
  • 54
    • 33744471931 scopus 로고    scopus 로고
    • Enhanced automated function prediction using distantly related sequences and contextual association by PFP
    • DOI 10.1110/ps.062153506
    • Hawkins T, Luban S, Kihara D (2006) Enhanced automated function prediction using distantly related sequences and contextual association by PFP. Protein Sci. 5(6): 1550-6. (Pubitemid 43800030)
    • (2006) Protein Science , vol.15 , Issue.6 , pp. 1550-1556
    • Hawkins, T.1    Luban, S.2    Kihara, D.3
  • 55
    • 67649868148 scopus 로고    scopus 로고
    • ESG: Extended similarity group method for automated protein function prediction
    • Chitale M, Hawkins T, Park C, Kihara D (2009) ESG: extended similarity group method for automated protein function prediction. Bioinformatics. 5(14): 1739-45.
    • (2009) Bioinformatics , vol.5 , Issue.14 , pp. 1739-1745
    • Chitale, M.1    Hawkins, T.2    Park, C.3    Kihara, D.4
  • 56
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • DOI 10.1093/bioinformatics/bti610
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 21(18): 3674-6. (Pubitemid 41264107)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 57
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Web Server issue
    • Schattner P, Brooks AN, Lowe TM (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33(Web Server issue).
    • (2005) Nucleic Acids Res , pp. 33
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 59
    • 84863710150 scopus 로고    scopus 로고
    • Phage morphology recapitulates phylogeny: The comparative genomics of a new group of myoviruses
    • Comeau AM, Tremblay D, Moineau S, Rattei T, Kushkina AI, et al. (2012) Phage morphology recapitulates phylogeny: the comparative genomics of a new group of myoviruses. PLoS One. 7(7): e40102.
    • (2012) PLoS One , vol.7 , Issue.7
    • Comeau, A.M.1    Tremblay, D.2    Moineau, S.3    Rattei, T.4    Kushkina, A.I.5
  • 61
    • 0035180718 scopus 로고    scopus 로고
    • Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages
    • DOI 10.1128/JB.183.1.358-366.2001
    • Tétart F, Desplats C, Kutateladze M, Monod C, Ackermann HW, et al. (2001) Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages.J Bacteriol. 183(1): 358-66. (Pubitemid 32003143)
    • (2001) Journal of Bacteriology , vol.183 , Issue.1 , pp. 358-366
    • Tetart, F.1    Desplats, C.2    Kutateladze, M.3    Monod, C.4    Ackermann, H.-W.5    Krisch, H.M.6
  • 62
    • 84857131687 scopus 로고    scopus 로고
    • A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans
    • Sabehi G, Shaulov L, Silver DH, Yanai I, Harel A, et al. (2012) A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans.Proc Natl Acad Sci USA. 109(6): 2037-42.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.6 , pp. 2037-2042
    • Sabehi, G.1    Shaulov, L.2    Silver, D.H.3    Yanai, I.4    Harel, A.5
  • 64
    • 10044222704 scopus 로고    scopus 로고
    • CLANS: A Java application for visualizing protein families based on pairwise similarity
    • DOI 10.1093/bioinformatics/bth444
    • Frickey T, Lupas A (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics. 20(18): 3702-4. (Pubitemid 40136822)
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3702-3704
    • Frickey, T.1    Lupas, A.2
  • 66
    • 84862909016 scopus 로고    scopus 로고
    • Complete Genome Sequence of Bacillus cereus Bacteriophage BCP78J
    • Lee JH, Shin H, Son B, Ryu S (2012) Complete Genome Sequence of Bacillus cereus Bacteriophage BCP78J Virol 86 (1): 637-638.
    • (2012) Virol , vol.86 , Issue.1 , pp. 637-638
    • Lee, J.H.1    Shin, H.2    Son, B.3    Ryu, S.4
  • 67
    • 84862259899 scopus 로고    scopus 로고
    • Characterization of an endolysin, LysBPS13, from a Bacillus cereus bacteriophage
    • Park J, Yun J, Lim JA, Kang DH, Ryu S (2012) Characterization of an endolysin, LysBPS13, from a Bacillus cereus bacteriophage FEMS Microbiol Lett 332 (1): 76-83.
    • (2012) FEMS Microbiol Lett , vol.332 , Issue.1 , pp. 76-83
    • Park, J.1    Yun, J.2    Lim, J.A.3    Kang, D.H.4    Ryu, S.5
  • 68
    • 84870691954 scopus 로고    scopus 로고
    • Complete Genome Sequence of Wide-Host-Range Staphylococcus aureus Phage JD007J
    • Cui Z, Song Z, Wang Y, Zeng L, Shen W, et al. (2012) Complete Genome Sequence of Wide-Host-Range Staphylococcus aureus Phage JD007J. Virol. 86.
    • (2012) Virol , pp. 86
    • Cui, Z.1    Song, Z.2    Wang, Y.3    Zeng, L.4    Shen, W.5
  • 69
    • 77957857001 scopus 로고    scopus 로고
    • Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites
    • Kilcher S, Loessner MJ, Klumpp J (2010) Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sitesJ. Bacteriol. 192.
    • (2010) J. Bacteriol. , pp. 192
    • Kilcher, S.1    Loessner, M.J.2    Klumpp, J.3
  • 70
    • 27744503831 scopus 로고    scopus 로고
    • Bacteriophage P100 for control of Listeria monocytogenes in foods: Genome sequence, bioinformatic analyses, oral toxicity study, and application
    • DOI 10.1016/j.yrtph.2005.08.005, PII S0273230005001534
    • Carlton RM, Noordman WH, Biswas B, de Meester ED, Loessner MJ (2005) Bacteriophage P100 for control of Listeria monocytogenes in foods: genome sequence, bioinformatic analyses, oral toxicity study, and applicationRegul. Toxicol. Pharmacol. 43 (3): 301-312. (Pubitemid 41616396)
    • (2005) Regulatory Toxicology and Pharmacology , vol.43 , Issue.3 , pp. 301-312
    • Carlton, R.M.1    Noordman, W.H.2    Biswas, B.3    De Meester, E.D.4    Loessner, M.J.5
  • 71
    • 84865091087 scopus 로고    scopus 로고
    • Complete Genome Sequence of Staphylococcus aureus Bacteriophage GH15J
    • Gu J, Liu X, Lu R, Li Y, Song J, et al. (2012) Complete Genome Sequence of Staphylococcus aureus Bacteriophage GH15J. Virol. 86 (16): 8914-8915.
    • (2012) Virol , vol.86 , Issue.16 , pp. 8914-8915
    • Gu, J.1    Liu, X.2    Lu, R.3    Li, Y.4    Song, J.5
  • 72
    • 80052555956 scopus 로고    scopus 로고
    • Microbiological and Molecular Assessment of Bacteriophage ISP for the Control of Staphylococcus aureus
    • Vandersteegen K, Mattheus W, Ceyssens PJ, Bilocq F, De Vos D, et al. (2011) Microbiological and Molecular Assessment of Bacteriophage ISP for the Control of Staphylococcus aureusPLoS ONE 6 (9): E24418.
    • (2011) PLoS ONE , vol.6 , Issue.9
    • Vandersteegen, K.1    Mattheus, W.2    Ceyssens, P.J.3    Bilocq, F.4    De Vos, D.5
  • 73
    • 1942443183 scopus 로고    scopus 로고
    • Genome of Staphylococcal Phage K: A New Lineage of Myoviridae Infecting Gram-Positive Bacteria with a Low G+C Content
    • DOI 10.1128/JB.186.9.2862-2871.2004
    • O'Flaherty S, Coffey A, Edwards R, Meaney W, Fitzgerald GF, et al. (2004) Genome of staphylococcal phage K: a new lineage of Myoviridae infecting gram-positive bacteria with a low G+C contentJ. Bacteriol. 186 (9): 2862-2871. (Pubitemid 38525941)
    • (2004) Journal of Bacteriology , vol.186 , Issue.9 , pp. 2862-2871
    • O'Flaherty, S.1    Coffey, A.2    Edwards, R.3    Meaney, W.4    Fitzgerald, G.F.5    Ross, R.P.6
  • 74
    • 84860389517 scopus 로고    scopus 로고
    • Evaluation of lytic activity of staphylococcal bacteriophage Sb-1 against freshly isolated clinical pathogens
    • Leila K, Nana B, Tamila M, Ekaterine T, Natia S, et al. (2011) Evaluation of lytic activity of staphylococcal bacteriophage Sb-1 against freshly isolated clinical pathogensMicrob Biotechnol. 4(5): 643-50.
    • (2011) Microb Biotechnol , vol.4 , Issue.5 , pp. 643-650
    • Leila, K.1    Nana, B.2    Tamila, M.3    Ekaterine, T.4    Natia, S.5
  • 75
    • 84862503656 scopus 로고    scopus 로고
    • Gegenees: Fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups
    • Agren J, Sundström A, Håfström T, Segerman B (2012) Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups. PLoS One. 7(6): e39107.
    • (2012) PLoS One , vol.7 , Issue.6
    • Agren, J.1    Sundström, A.2    Håfström, T.3    Segerman, B.4
  • 76
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23.
    • (2006) Mol Biol Evol , pp. 23
    • Huson, D.H.1    Bryant, D.2
  • 77
    • 84872282918 scopus 로고    scopus 로고
    • The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains
    • Soares SC, Silva A, Trost E, Blom J, Ramos R, et al. (2013) The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains. PLoS One. 8(1): e53818.
    • (2013) PLoS One , vol.8 , Issue.1
    • Soares, S.C.1    Silva, A.2    Trost, E.3    Blom, J.4    Ramos, R.5
  • 78
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59(3): 307-21.
    • (2010) Syst Biol , vol.59 , Issue.3 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 79
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5): 1792-7.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 80
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of best-fit models of protein evolution
    • Darriba D, Taboada GL, Doallo R, Posada D (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics. 27: 1164-1165,
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 81
    • 36549003111 scopus 로고    scopus 로고
    • A Congruence Index for Testing Topological Similarity between Trees
    • de Vienne DM, Giraud T, Martin OC (200)7. A Congruence Index for Testing Topological Similarity between Trees. Bioinformatics. 23.
    • (2007) Bioinformatics , pp. 23
    • De Vienne, D.M.1    Giraud, T.2    Martin, O.C.3
  • 82
    • 79961109150 scopus 로고    scopus 로고
    • BLAST Ring Image Generator (BRIG): Simple prokaryote genome comparisons
    • Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics. 12: 402.
    • (2011) BMC Genomics , vol.12 , pp. 402
    • Alikhan, N.F.1    Petty, N.K.2    Ben Zakour, N.L.3    Beatson, S.A.4
  • 83
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 5(6): e11147.
    • (2010) PLoS One , vol.5 , Issue.6
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 84
    • 0036597231 scopus 로고    scopus 로고
    • Bacteriophages: Evolution of the majority
    • Hendrix RW (2002) Bacteriophages: evolution of the majority.Theor Popul Biol. 61(4): 471-80.
    • (2002) Theor Popul Biol , vol.61 , Issue.4 , pp. 471-480
    • Hendrix, R.W.1
  • 85
  • 86
    • 33947328397 scopus 로고    scopus 로고
    • Evolution and the complexity of bacteriophages
    • Serwer P (2007) Evolution and the complexity of bacteriophages. Virol J. 4: 30.
    • (2007) Virol J , vol.4 , pp. 30
    • Serwer, P.1
  • 88
    • 84861391321 scopus 로고    scopus 로고
    • Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus
    • Yuan Y, Gao M, Wu D, Liu P, Wu Y (2012) Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus. PLoS One. 7(5): e37557.
    • (2012) PLoS One , vol.7 , Issue.5
    • Yuan, Y.1    Gao, M.2    Wu, D.3    Liu, P.4    Wu, Y.5
  • 89
    • 84863992182 scopus 로고    scopus 로고
    • Novel bacteriophages containing a genome of another bacteriophage within their genomes
    • Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, et al. (2012) Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS One. 7(7): e40683.
    • (2012) PLoS One , vol.7 , Issue.7
    • Swanson, M.M.1    Reavy, B.2    Makarova, K.S.3    Cock, P.J.4    Hopkins, D.W.5
  • 90
    • 33646264828 scopus 로고    scopus 로고
    • Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry
    • Fouts DE, Rasko DA, Cer RZ, Jiang L, Fedorova NB, et al. (2006) Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry. J Bacteriol. 188(9): 3402-8.
    • (2006) J Bacteriol , vol.188 , Issue.9 , pp. 3402-3408
    • Fouts, D.E.1    Rasko, D.A.2    Cer, R.Z.3    Jiang, L.4    Fedorova, N.B.5
  • 91
    • 33645967146 scopus 로고    scopus 로고
    • Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: Implications for evolution of environmental fitness and antibiotic resistance
    • Schuch R, Fischett VA (2006) Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance. J Bacteriol. 188(8): 3037-51.
    • (2006) J Bacteriol , vol.188 , Issue.8 , pp. 3037-3051
    • Schuch, R.1    Fischett, V.A.2
  • 93
    • 37349090734 scopus 로고    scopus 로고
    • The ATPase SpoIIIE Transports DNA across Fused Septal Membranes during Sporulation in Bacillus subtilis
    • DOI 10.1016/j.cell.2007.11.009, PII S0092867407014134
    • Burton BM, Marquis KA, Sullivan NL, Rapoport TA, Rudner DZ (2007) The ATPase SpoIIIE transports DNA across fused septal membranes during sporulation in Bacillus subtilis. Cell. 131(7): 1301-12. (Pubitemid 350297414)
    • (2007) Cell , vol.131 , Issue.7 , pp. 1301-1312
    • Burton, B.M.1    Marquis, K.A.2    Sullivan, N.L.3    Rapoport, T.A.4    Rudner, D.Z.5
  • 94
    • 0017752221 scopus 로고
    • Bacteriophage PMB12 conversion of the sporulation defect in RNA polymerase mutants of Bacillus subtilis
    • Bramucci MG, Keggins KM, Lovett PS (1977) Bacteriophage PMB12 conversion of the sporulation defect in RNA polymerase mutants of Bacillus subtilis. J Virol. 24(1): 194-200. (Pubitemid 8190851)
    • (1977) Journal of Virology , vol.24 , Issue.1 , pp. 194-200
    • Bramucci, M.G.1    Keggins, K.M.2    Lovett, P.S.3
  • 95
    • 79957877061 scopus 로고    scopus 로고
    • The genome of Bacillus subtilis phage SP10: A comparative analysis with phage SPO1
    • Yee LM, Matsumoto T, Yano K, Matsuoka S, Sadaie Y, et al. (2011) The genome of Bacillus subtilis phage SP10: a comparative analysis with phage SPO1. Biosci Biotechnol Biochem. 75(5): 944-52.
    • (2011) Biosci Biotechnol Biochem , vol.75 , Issue.5 , pp. 944-952
    • Yee, L.M.1    Matsumoto, T.2    Yano, K.3    Matsuoka, S.4    Sadaie, Y.5
  • 96
    • 0344863179 scopus 로고    scopus 로고
    • The complete nucleotide sequence and functional organization of Bacillus subtilis bacteriophage SPP1
    • DOI 10.1016/S0378-1119(97)00547-7, PII S0378111997005477
    • Alonso JC, Lüder G, Stiege AC, Chai S, Weise F, et al. (1997) The complete nucleotide sequence and functional organization of Bacillus subtilis bacteriophage SPP1. Gene. 204(1-2): 201-12. (Pubitemid 28022190)
    • (1997) Gene , vol.204 , Issue.1-2 , pp. 201-212
    • Alonso, J.C.1    Luder, G.2    Stiege, A.C.3    Chai, S.4    Weise, F.5    Trautner, T.A.6
  • 97
    • 0037545836 scopus 로고    scopus 로고
    • Characterization of poly-gamma-glutamate hydrolase encoded by a bacteriophage genome: Possible role in phage infection of bacillus subtilis encapsulated with poly-gamma-glutamate
    • DOI 10.1128/AEM.69.5.2491-2497.2003
    • Kimura K, Itoh Y (2003) Characterization of poly-gamma-glutamate hydrolase encoded by a bacteriophage genome: possible role in phage infection of Bacillus subtilis encapsulated with poly-gamma-glutamate. Appl Environ Microbiol. 69(5): 2491-7. (Pubitemid 36560321)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.5 , pp. 2491-2497
    • Kimura, K.1    Itoh, Y.2
  • 98
    • 33745289074 scopus 로고    scopus 로고
    • Poly-gamma-glutamate in bacteria
    • DOI 10.1111/j.1365-2958.2006.05179.x
    • Candela T, Fouet A (2006) Poly-gamma-glutamate in bacteria. Mol Microbiol. 60(5): 1091-8. (Pubitemid 43922223)
    • (2006) Molecular Microbiology , vol.60 , Issue.5 , pp. 1091-1098
    • Candela, T.1    Fouet, A.2
  • 99
    • 78349292566 scopus 로고    scopus 로고
    • Exopolymeric substances (EPS) from Bacillus subtilis: Polymers and genes encoding their synthesis
    • Marvasi M, Visscher PT, Casillas Martinez L (2010) Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis. FEMS Microbiol Lett. 313(1): 1-9.
    • (2010) FEMS Microbiol Lett , vol.313 , Issue.1 , pp. 1-9
    • Marvasi, M.1    Visscher, P.T.2    Casillas Martinez, L.3
  • 100
    • 77954944222 scopus 로고    scopus 로고
    • The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism
    • Thompson JE, Pourhossein M, Waterhouse A, Hudson T, Goldrick M, et al. (2010) The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism. J Biol Chem. 285(31): 23963-9.
    • (2010) J Biol Chem , vol.285 , Issue.31 , pp. 23963-23969
    • Thompson, J.E.1    Pourhossein, M.2    Waterhouse, A.3    Hudson, T.4    Goldrick, M.5
  • 101
    • 84861951551 scopus 로고    scopus 로고
    • Genomic characterization of two Staphylococcus epidermidis bacteriophages with antibiofilm potential
    • Gutiérrez D, Martínez B, Rodríguez A, García P (2012) Genomic characterization of two Staphylococcus epidermidis bacteriophages with antibiofilm potential. BMC Genomics. 13: 228.
    • (2012) BMC Genomics , vol.13 , pp. 228
    • Gutiérrez, D.1    Martínez, B.2    Rodríguez, A.3    García, P.4


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