Alignment-free d2∗ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

Nucleic Acids Research

Volumn 45, Issue 1, 2017, Pages 39-53

  Ahlgren, Nathan A ^a   Ren, Jie ^a   Lu, Yang Young ^a   Fuhrman, Jed A ^a   Sun, Fengzhu ^a,b  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b FUDAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE;

ARCHAEAL VIRUS; ARTICLE; BACTERIAL GENOME; BACTERIOPHAGE; CROSS ASSEMBLY PHAGE; GENE FREQUENCY; GENE SEQUENCE; GENETIC DATABASE; GENUS; HOST; HUMAN; MEASUREMENT ACCURACY; METAGENOMICS; MICROBIAL GENOME; NONHUMAN; NUCLEIC ACID ANALYSIS; NUCLEIC ACID STRUCTURE; OLIGONUCLEOTIDE FREQUENCY DISSIMILARITY MEASUREMENT; PREDICTION; SEQUENCE HOMOLOGY; TAXONOMY; BACTERIUM; CHEMISTRY; CLASSIFICATION; GASTROINTESTINAL TRACT; GENETICS; HUMAN GENOME; METABOLISM; NUCLEOTIDE SEQUENCE; PHYLOGENY; VIROLOGY; VIRUS GENOME;

BACTERIA; BACTERIOPHAGES; BASE SEQUENCE; GASTROINTESTINAL TRACT; GENOME, BACTERIAL; GENOME, HUMAN; GENOME, VIRAL; HUMANS; METAGENOMICS; OLIGONUCLEOTIDES; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 85016002937     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw1002     Document Type: Article

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