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Volumn 513, Issue 7517, 2014, Pages 242-245

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; DOUBLE STRANDED DNA; SEA WATER;

EID: 84906254581     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13459     Document Type: Article
Times cited : (144)

References (30)
  • 1
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh, O., Børsheim, K. Y., Bratbak, G. & Heldal, M. High abundance of viruses found in aquatic environments. Nature 340, 467-468 (1989).
    • (1989) Nature , vol.340 , pp. 467-468
    • Bergh, O.1    Børsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 2
    • 83655191021 scopus 로고    scopus 로고
    • Marine viruses: Truth or dare
    • Breitbart, M. Marine viruses: truth or dare. Annu. Rev. Mar. Sci. 4, 425-448 (2012).
    • (2012) Annu. Rev. Mar. Sci. , vol.4 , pp. 425-448
    • Breitbart, M.1
  • 3
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - Major players in the global ecosystem
    • Suttle, C. A. Marine viruses - major players in the global ecosystem. Nature Rev. Microbiol. 5, 801-812 (2007).
    • (2007) Nature Rev. Microbiol. , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 4
    • 84887380143 scopus 로고    scopus 로고
    • Metabolic reprogramming by viruses in the sunlit and dark ocean
    • Hurwitz, B. L., Hallam, S. J.&Sullivan, M. B. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol. 14, R123 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R123
    • Hurwitz, B.L.1    Hallam, S.J.2    Sullivan, M.B.3
  • 5
    • 84879060146 scopus 로고    scopus 로고
    • Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
    • Flombaum, P. et al. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proc. Natl Acad. Sci. USA 110, 9824-9829 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 9824-9829
    • Flombaum, P.1
  • 6
    • 84856148335 scopus 로고    scopus 로고
    • Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains
    • Holmfeldt, K., Odić, D., Sullivan, M. B., Middelboe, M. & Riemann, L. Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains. Appl. Environ. Microbiol. 78, 892-894 (2012).
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 892-894
    • Holmfeldt, K.1    Odić, D.2    Sullivan, M.B.3    Middelboe, M.4    Riemann, L.5
  • 7
    • 77249114108 scopus 로고    scopus 로고
    • Comparative genomic analysis of 60 mycobacteriophage genomes: Genome clustering, gene acquisition, and gene size
    • Hatfull, G. F., Jacobs-Sera, D.&Lawrence, J. G. Comparative genomic analysis of 60 mycobacteriophage genomes: genome clustering, gene acquisition, and gene size. J. Mol. Biol. 397, 119-143 (2010).
    • (2010) J. Mol. Biol. , vol.397 , pp. 119-143
    • Hatfull, G.F.1    Jacobs-Sera, D.2    Lawrence, J.G.3
  • 8
    • 49149115195 scopus 로고    scopus 로고
    • Unifying classical and molecular taxonomic classification: Analysis of the Podoviridae using BLASTP-based tools
    • Lavigne, R., Seto, D., Mahadevan, P., Ackermann, H.-W. & Kropinski, A. M. Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools. Res. Microbiol. 159, 406-414 (2008).
    • (2008) Res. Microbiol. , vol.159 , pp. 406-414
    • Lavigne, R.1    Seto, D.2    Mahadevan, P.3    Ackermann, H.-W.4    Kropinski, A.M.5
  • 9
    • 78249280297 scopus 로고    scopus 로고
    • Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
    • Sullivan, M. B. et al. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ. Microbiol. 12, 3035-3056 (2010).
    • (2010) Environ. Microbiol. , vol.12 , pp. 3035-3056
    • Sullivan, M.B.1
  • 10
    • 17644410730 scopus 로고    scopus 로고
    • The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus strains
    • Mann, N. H. et al. The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus strains. J. Bacteriol. 187, 3188-3200 (2005).
    • (2005) J. Bacteriol. , vol.187 , pp. 3188-3200
    • Mann, N.H.1
  • 11
    • 84872165538 scopus 로고    scopus 로고
    • Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging
    • Deng, L., Gregory, A., Yilmaz, S., Poulos, B. T., Hugenholtz, P. & Sullivan, M. B. Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBio 3, e00373-12 (2012).
    • (2012) MBio , vol.3 , pp. e00373-e00412
    • Deng, L.1    Gregory, A.2    Yilmaz, S.3    Poulos, B.T.4    Hugenholtz, P.5    Sullivan, M.B.6
  • 12
    • 84865720549 scopus 로고    scopus 로고
    • Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method
    • Duhaime, M. B., Deng, L., Poulos, B. T. & Sullivan, M. B. Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method. Environ. Microbiol. 14, 2526-2537 (2012).
    • (2012) Environ. Microbiol. , vol.14 , pp. 2526-2537
    • Duhaime, M.B.1    Deng, L.2    Poulos, B.T.3    Sullivan, M.B.4
  • 13
    • 84873174809 scopus 로고    scopus 로고
    • Phage-bacteria infection networks
    • Weitz, J. S. et al. Phage-bacteria infection networks. Trends Microbiol. 21, 82-91 (2013).
    • (2013) Trends Microbiol. , vol.21 , pp. 82-91
    • Weitz, J.S.1
  • 14
    • 79959588019 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial traits within oceanic viral communities
    • Sharon, I. et al. Comparative metagenomics of microbial traits within oceanic viral communities. ISME J. 5, 1178-1190 (2011).
    • (2011) ISME J. , vol.5 , pp. 1178-1190
    • Sharon, I.1
  • 15
    • 70249108768 scopus 로고    scopus 로고
    • Photosystem I gene cassettes are present in marine virus genomes
    • Sharon, I. et al. Photosystem I gene cassettes are present in marine virus genomes. Nature 461, 258-262 (2009).
    • (2009) Nature , vol.461 , pp. 258-262
    • Sharon, I.1
  • 16
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
    • Sullivan, M. B., Coleman, M. L., Weigele, P., Rohwer, F. & Chisholm, S. W. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3, e144 (2005).
    • (2005) PLoS Biol. , vol.3 , pp. e144
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 17
    • 69949104491 scopus 로고    scopus 로고
    • Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: Implications for mechanisms of cyanophage evolution
    • Millard, A. D., Zwirglmaier, K., Downey, M. J., Mann, N. H. & Scanlan, D. J. Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution. Environ. Microbiol. 11, 2370-2387 (2009).
    • (2009) Environ. Microbiol. , vol.11 , pp. 2370-2387
    • Millard, A.D.1    Zwirglmaier, K.2    Downey, M.J.3    Mann, N.H.4    Scanlan, D.J.5
  • 18
    • 70350439599 scopus 로고    scopus 로고
    • Genomic analysis of multiple Roseophage SIO1 strains
    • Angly, F. et al. Genomic analysis of multiple Roseophage SIO1 strains. Environ. Microbiol. 11, 2863-2873 (2009).
    • (2009) Environ. Microbiol. , vol.11 , pp. 2863-2873
    • Angly, F.1
  • 19
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis, K. T. Genomic insights that advance the species definition for prokaryotes. Proc. Natl Acad. Sci. USA 102, 2567-2572 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1
  • 20
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: Genetic exchange and failings of phenetic approaches
    • Lawrence, J. G., Hatfull, G. F. & Hendrix, R. W. Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J. Bacteriol. 184, 4891-4905 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 22
    • 84858273407 scopus 로고    scopus 로고
    • The secret lives of mycobacteriophages
    • Hatfull, G. F. The secret lives of mycobacteriophages. Adv. Virus Res. 82, 179-288 (2012).
    • (2012) Adv. Virus Res. , vol.82 , pp. 179-288
    • Hatfull, G.F.1
  • 23
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
    • Hendrix, R. W., Smith, M. C., Burns, R. N., Ford, M. E. & Hatfull, G. F. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl Acad. Sci. USA 96, 2192-2197 (1999).
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 24
    • 70350459198 scopus 로고    scopus 로고
    • Recombination and microdiversity in coastalmarine cyanophages
    • Marston, M. F.&Amrich, C. G. Recombination and microdiversity in coastalmarine cyanophages. Environ. Microbiol. 11, 2893-2903 (2009).
    • (2009) Environ. Microbiol. , vol.11 , pp. 2893-2903
    • Marston, M.F.1    Amrich, C.G.2
  • 25
    • 84864387036 scopus 로고    scopus 로고
    • Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes
    • Ignacio-Espinoza, J. C. & Sullivan, M. B. Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes. Environ. Microbiol. 14, 2113-2126 (2012).
    • (2012) Environ. Microbiol. , vol.14 , pp. 2113-2126
    • Ignacio-Espinoza, J.C.1    Sullivan, M.B.2
  • 26
    • 84886729050 scopus 로고    scopus 로고
    • Previously unknown and highly divergent ssDNA viruses populate the oceans
    • Labonté, J. M. & Suttle, C. A. Previously unknown and highly divergent ssDNA viruses populate the oceans. ISME J. 7, 2169-2177 (2013).
    • (2013) ISME J. , vol.7 , pp. 2169-2177
    • Labonté, J.M.1    Suttle, C.A.2
  • 27
    • 84875273263 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of bacterial and archaeal population structure
    • Polz, M. F., Alm, E. J. & Hanage, W. P. Horizontal gene transfer and the evolution of bacterial and archaeal population structure. Trends Genet. 29, 170-175 (2013).
    • (2013) Trends Genet. , vol.29 , pp. 170-175
    • Polz, M.F.1    Alm, E.J.2    Hanage, W.P.3
  • 28
    • 0001631420 scopus 로고
    • Dominance and diversity in land plant communities: Numerical relations of species express the importance of competition in community function and evolution
    • Whittaker, R. H. Dominance and diversity in land plant communities: numerical relations of species express the importance of competition in community function and evolution. Science 147, 250-260 (1965).
    • (1965) Science , vol.147 , pp. 250-260
    • Whittaker, R.H.1
  • 29
    • 79953101588 scopus 로고    scopus 로고
    • Phenotypic and genotypic variations within a single bacteriophage species
    • Ceyssens, P. J. et al. Phenotypic and genotypic variations within a single bacteriophage species. Virol. J. 8, 134 (2011).
    • (2011) Virol. J. , vol.8 , pp. 134
    • Ceyssens, P.J.1
  • 30
    • 84859499489 scopus 로고    scopus 로고
    • Population genomics of early events in the ecological differentiation of bacteria
    • Shapiro, B. J. et al. Population genomics of early events in the ecological differentiation of bacteria. Science 336, 48-51 (2012).
    • (2012) Science , vol.336 , pp. 48-51
    • Shapiro, B.J.1


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