-
1
-
-
43149086380
-
ALLPATHS: de novo assembly of whole-genome shotgun microreads
-
Butler, J. et al. (2008) ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res., 18, 810-820.
-
(2008)
Genome Res
, vol.18
, pp. 810-820
-
-
Butler, J.1
-
2
-
-
39049156065
-
Short read fragment assembly of bacterial genomes
-
Chaisson, M.J. and Pevzner, P.A. (2008) Short read fragment assembly of bacterial genomes. Genome Res., 18, 324-330.
-
(2008)
Genome Res
, vol.18
, pp. 324-330
-
-
Chaisson, M.J.1
Pevzner, P.A.2
-
3
-
-
59949093527
-
De novo fragment assembly with short mate-paired reads: Does the read length matter?
-
Chaisson, M.J. et al. (2009) De novo fragment assembly with short mate-paired reads: Does the read length matter? Genome Res., 19, 336-346.
-
(2009)
Genome Res
, vol.19
, pp. 336-346
-
-
Chaisson, M.J.1
-
4
-
-
80054732674
-
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
-
Chitsaz, H. et al. (2011) Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nat. Biotechnol., 29, 915-921.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 915-921
-
-
Chitsaz, H.1
-
5
-
-
83055181941
-
Assemblathon 1 a competitive assessment of de novo short read assembly methods
-
Earl, D. et al. (2011) Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res., 21, 2224-2241.
-
(2011)
Genome Res
, vol.21
, pp. 2224-2241
-
-
Earl, D.1
-
6
-
-
43149085041
-
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer
-
Hernandez, D. et al. (2008) De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res., 18, 802-809.
-
(2008)
Genome Res
, vol.18
, pp. 802-809
-
-
Hernandez, D.1
-
7
-
-
78649358717
-
Quake: quality-aware detection and correction of sequencing errors
-
Kelley, D.R. et al. (2010) Quake: quality-aware detection and correction of sequencing errors. Genome Biol., 11, R116.
-
(2010)
Genome Biol
, vol.11
-
-
Kelley, D.R.1
-
8
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent, W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
9
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R. et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res., 20, 265-272.
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
-
10
-
-
79959485321
-
Error correction of high-throughput sequencing datasets with non-uniform coverage
-
Medvedev, P. et al. (2011) Error correction of high-throughput sequencing datasets with non-uniform coverage. Bioinformatics, 27, i137-i141.
-
(2011)
Bioinformatics
, vol.27
-
-
Medvedev, P.1
-
11
-
-
59149090570
-
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes
-
Noguchi, H. et al. (2008) MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. DNA Res., 15, 387-396.
-
(2008)
DNA Res
, vol.15
, pp. 387-396
-
-
Noguchi, H.1
-
12
-
-
84872207312
-
IDBA - a practical iterative de Bruijn graph de novo assembler
-
Peng, Y. et al. (2010) IDBA - a practical iterative de Bruijn graph de novo assembler. In RECOMB, Lisbon.
-
(2010)
RECOMB, Lisbon
-
-
Peng, Y.1
-
13
-
-
79959422558
-
Meta-IDBA: a de Novo assembler for metagenomic data
-
Peng, Y. et al. (2011) Meta-IDBA: a de Novo assembler for metagenomic data. Bioinformatics, 27, i94-i101.
-
(2011)
Bioinformatics
, vol.27
-
-
Peng, Y.1
-
14
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
Pevzner, P.A. et al. (2001) An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci. USA, 98, 9748-9753.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
-
15
-
-
70149108769
-
Whole genome amplification and de novo assembly of single bacterial cells
-
Rodrigue, S. et al. (2009) Whole genome amplification and de novo assembly of single bacterial cells. PLoS One, 4, e6864.
-
(2009)
PLoS One
, vol.4
-
-
Rodrigue, S.1
-
16
-
-
66449136667
-
ABySS: a parallel assembler for short read sequence data
-
Simpson, J.T. et al. (2009) ABySS: a parallel assembler for short read sequence data. Genome Res., 19, 1117-1123.
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
-
17
-
-
77649200259
-
Aprimer on metagenomics
-
Wooley, J.C. et al. (2010)Aprimer on metagenomics. PLoS Comput. Biol., 6, e1000667.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Wooley, J.C.1
-
18
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
Woyke, T. et al. (2009) Assembling the marine metagenome, one cell at a time. PLoS One, 4, e5299.
-
(2009)
PLoS One
, vol.4
-
-
Woyke, T.1
-
19
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
20
-
-
77949511368
-
Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler
-
Zerbino, D.R. et al. (2009) Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS One, 4, e8407.
-
(2009)
PLoS One
, vol.4
-
-
Zerbino, D.R.1
|