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Volumn , Issue , 2013, Pages 19-40

Transcription Termination by RNA Polymerase II

Author keywords

Allosteric model; RNA polymerase II; SnoRNA; Termination pathway; Torpedo model; Transcription termination

Indexed keywords


EID: 85016821326     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527665433.ch2     Document Type: Chapter
Times cited : (1)

References (145)
  • 1
    • 0023478621 scopus 로고
    • A poly(A) addition site and a downstream termination region are required for efficient cessation of transcription by RNA polymerase II in the mouse beta maj-globin gene
    • Logan, J., Falck-Pedersen, E., Darnell, J.E., Jr., and Shenk, T. (1987) A poly(A) addition site and a downstream termination region are required for efficient cessation of transcription by RNA polymerase II in the mouse beta maj-globin gene. Proc. Natl. Acad. Sci. U.S.A., 84, 8306-8310.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 8306-8310
    • Logan, J.1    Falck-Pedersen, E.2    Darnell, J.E.3    Shenk, T.4
  • 2
    • 0023990221 scopus 로고
    • A functional mRNA polyadenylation signal is required for transcription termination by RNA polymerase II
    • Connelly, S. and Manley, J.L. (1988) A functional mRNA polyadenylation signal is required for transcription termination by RNA polymerase II. Genes Dev., 2, 440-452.
    • (1988) Genes Dev. , vol.2 , pp. 440-452
    • Connelly, S.1    Manley, J.L.2
  • 3
    • 0034307008 scopus 로고    scopus 로고
    • Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
    • Komarnitsky, P., Cho, E.J., and Buratowski, S. (2000) Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev., 14, 2452-2460.
    • (2000) Genes Dev. , vol.14 , pp. 2452-2460
    • Komarnitsky, P.1    Cho, E.J.2    Buratowski, S.3
  • 4
    • 0035893314 scopus 로고    scopus 로고
    • Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
    • Cho, E.J., Kobor, M.S., Kim, M., Greenblatt, J., and Buratowski, S. (2001) Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes Dev., 15, 3319-3329.
    • (2001) Genes Dev. , vol.15 , pp. 3319-3329
    • Cho, E.J.1    Kobor, M.S.2    Kim, M.3    Greenblatt, J.4    Buratowski, S.5
  • 6
    • 80555125095 scopus 로고    scopus 로고
    • RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing
    • Hsin, J.P., Sheth, A., and Manley, J.L. (2011) RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing. Science, 334, 683-686.
    • (2011) Science , vol.334 , pp. 683-686
    • Hsin, J.P.1    Sheth, A.2    Manley, J.L.3
  • 8
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • Buratowski, S. (2009) Progression through the RNA polymerase II CTD cycle. Mol. Cell, 36, 541-546.
    • (2009) Mol. Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 11
    • 84856273602 scopus 로고    scopus 로고
    • A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes
    • Bataille, A.R., Jeronimo, C., Jacques, P.E., Laramee, L., Fortin, M.E., Forest, A., Bergeron, M., Hanes, S.D., and Robert, F. (2012) A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. Mol. Cell, 45, 158-170.
    • (2012) Mol. Cell , vol.45 , pp. 158-170
    • Bataille, A.R.1    Jeronimo, C.2    Jacques, P.E.3    Laramee, L.4    Fortin, M.E.5    Forest, A.6    Bergeron, M.7    Hanes, S.D.8    Robert, F.9
  • 12
    • 0031453408 scopus 로고    scopus 로고
    • mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain
    • Cho, E.J., Takagi, T., Moore, C.R., and Buratowski, S. (1997) mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev., 11, 3319-3326.
    • (1997) Genes Dev. , vol.11 , pp. 3319-3326
    • Cho, E.J.1    Takagi, T.2    Moore, C.R.3    Buratowski, S.4
  • 13
    • 62549104640 scopus 로고    scopus 로고
    • Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters
    • Qiu, H., Hu, C., and Hinnebusch, A.G. (2009) Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters. Mol. Cell, 33, 752-762.
    • (2009) Mol. Cell , vol.33 , pp. 752-762
    • Qiu, H.1    Hu, C.2    Hinnebusch, A.G.3
  • 15
    • 1542290655 scopus 로고    scopus 로고
    • Transitions in RNA polymerase II elongation complexes at the 3' ends of genes
    • Kim, M., Ahn, S.H., Krogan, N.J., Greenblatt, J.F., and Buratowski, S. (2004) Transitions in RNA polymerase II elongation complexes at the 3' ends of genes. EMBO J., 23, 354-364.
    • (2004) EMBO J. , vol.23 , pp. 354-364
    • Kim, M.1    Ahn, S.H.2    Krogan, N.J.3    Greenblatt, J.F.4    Buratowski, S.5
  • 16
    • 1542334001 scopus 로고    scopus 로고
    • Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing
    • Ahn, S.H., Kim, M., and Buratowski, S. (2004) Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing. Mol. Cell, 13, 67-76.
    • (2004) Mol. Cell , vol.13 , pp. 67-76
    • Ahn, S.H.1    Kim, M.2    Buratowski, S.3
  • 18
    • 0035947082 scopus 로고    scopus 로고
    • Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination
    • Calvo, O. and Manley, J.L. (2001) Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination. Mol. Cell, 7, 1013-1023.
    • (2001) Mol. Cell , vol.7 , pp. 1013-1023
    • Calvo, O.1    Manley, J.L.2
  • 19
    • 0036490381 scopus 로고    scopus 로고
    • EM visualization of Pol II genes in Drosophila: most genes terminate without prior 3' end cleavage of nascent transcripts
    • Osheim, Y.N., Sikes, M.L., and Beyer, A.L. (2002) EM visualization of Pol II genes in Drosophila: most genes terminate without prior 3' end cleavage of nascent transcripts. Chromosoma, 111, 1-12.
    • (2002) Chromosoma , vol.111 , pp. 1-12
    • Osheim, Y.N.1    Sikes, M.L.2    Beyer, A.L.3
  • 20
    • 0038219583 scopus 로고    scopus 로고
    • Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination
    • Sadowski, M., Dichtl, B., Hubner, W., and Keller, W. (2003) Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. EMBO J., 22, 2167-2177.
    • (2003) EMBO J. , vol.22 , pp. 2167-2177
    • Sadowski, M.1    Dichtl, B.2    Hubner, W.3    Keller, W.4
  • 21
    • 22344443368 scopus 로고    scopus 로고
    • CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11
    • Zhang, Z., Fu, J., and Gilmour, D.S. (2005) CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11. Genes Dev., 19, 1572-1580.
    • (2005) Genes Dev. , vol.19 , pp. 1572-1580
    • Zhang, Z.1    Fu, J.2    Gilmour, D.S.3
  • 22
    • 0032502825 scopus 로고    scopus 로고
    • Coupling termination of transcription to messenger RNA maturation in yeast
    • Birse, C.E., Minvielle-Sebastia, L., Lee, B.A., Keller, W., and Proudfoot, N.J. (1998) Coupling termination of transcription to messenger RNA maturation in yeast. Science, 280, 298-301.
    • (1998) Science , vol.280 , pp. 298-301
    • Birse, C.E.1    Minvielle-Sebastia, L.2    Lee, B.A.3    Keller, W.4    Proudfoot, N.J.5
  • 24
    • 9644308046 scopus 로고    scopus 로고
    • Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites
    • West, S., Gromak, N., and Proudfoot, N.J. (2004) Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites. Nature, 432, 522-525.
    • (2004) Nature , vol.432 , pp. 522-525
    • West, S.1    Gromak, N.2    Proudfoot, N.J.3
  • 25
    • 0030917088 scopus 로고    scopus 로고
    • Transcriptional termination signals for RNA polymerase II in fission yeast
    • Birse, C.E., Lee, B.A., Hansen, K., and Proudfoot, N.J. (1997) Transcriptional termination signals for RNA polymerase II in fission yeast. EMBO J., 16, 3633-3643.
    • (1997) EMBO J. , vol.16 , pp. 3633-3643
    • Birse, C.E.1    Lee, B.A.2    Hansen, K.3    Proudfoot, N.J.4
  • 26
    • 0037044807 scopus 로고    scopus 로고
    • The poly(A) signal, without the assistance of any downstream element, directs RNA polymerase II to pause in vivo and then to release stochastically from the template
    • Orozco, I.J., Kim, S.J., and Martinson, H.G. (2002) The poly(A) signal, without the assistance of any downstream element, directs RNA polymerase II to pause in vivo and then to release stochastically from the template. J. Biol. Chem., 277, 42899-42911.
    • (2002) J. Biol. Chem. , vol.277 , pp. 42899-42911
    • Orozco, I.J.1    Kim, S.J.2    Martinson, H.G.3
  • 27
    • 34447125198 scopus 로고    scopus 로고
    • The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase
    • Nag, A., Narsinh, K., and Martinson, H.G. (2007) The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase. Nat. Struct. Mol. Biol., 14, 662-669.
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 662-669
    • Nag, A.1    Narsinh, K.2    Martinson, H.G.3
  • 28
    • 33645844251 scopus 로고    scopus 로고
    • The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model
    • Luo, W., Johnson, A.W., and Bentley, D.L. (2006) The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model. Genes Dev., 20, 954-965.
    • (2006) Genes Dev. , vol.20 , pp. 954-965
    • Luo, W.1    Johnson, A.W.2    Bentley, D.L.3
  • 29
    • 69249157270 scopus 로고    scopus 로고
    • Torpedo nuclease Rat1 is insufficient to terminate RNA polymerase II in vitro
    • Dengl, S. and Cramer, P. (2009) Torpedo nuclease Rat1 is insufficient to terminate RNA polymerase II in vitro. J. Biol. Chem., 284, 21270-21279.
    • (2009) J. Biol. Chem. , vol.284 , pp. 21270-21279
    • Dengl, S.1    Cramer, P.2
  • 30
    • 0037031891 scopus 로고    scopus 로고
    • RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides
    • Ujvari, A., Pal, M., and Luse, D.S. (2002) RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides. J. Biol. Chem., 277, 32527-32537.
    • (2002) J. Biol. Chem. , vol.277 , pp. 32527-32537
    • Ujvari, A.1    Pal, M.2    Luse, D.S.3
  • 31
    • 33646849728 scopus 로고    scopus 로고
    • Rho-dependent transcription termination: more questions than answers
    • Banerjee, S., Chalissery, J., Bandey, I., and Sen, R. (2006) Rho-dependent transcription termination: more questions than answers. J. Microbiol., 44, 11-22.
    • (2006) J. Microbiol. , vol.44 , pp. 11-22
    • Banerjee, S.1    Chalissery, J.2    Bandey, I.3    Sen, R.4
  • 33
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions
    • Kiss, T. (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell, 109, 145-148.
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 35
    • 0032126735 scopus 로고    scopus 로고
    • Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1
    • Chanfreau, G., Rotondo, G., Legrain, P., and Jacquier, A. (1998) Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1. EMBO J., 17, 3726-3737.
    • (1998) EMBO J. , vol.17 , pp. 3726-3737
    • Chanfreau, G.1    Rotondo, G.2    Legrain, P.3    Jacquier, A.4
  • 36
    • 0033785798 scopus 로고    scopus 로고
    • Musing on the structural organization of the exosome complex
    • Mitchell, P. and Tollervey, D. (2000) Musing on the structural organization of the exosome complex. Nat. Struct. Biol., 7, 843-846.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 843-846
    • Mitchell, P.1    Tollervey, D.2
  • 38
    • 3042796191 scopus 로고    scopus 로고
    • Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts
    • Carroll, K.L., Pradhan, D.A., Granek, J.A., Clarke, N.D., and Corden, J.L. (2004) Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Mol. Cell. Biol., 24, 6241-6252.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 6241-6252
    • Carroll, K.L.1    Pradhan, D.A.2    Granek, J.A.3    Clarke, N.D.4    Corden, J.L.5
  • 40
    • 0035921929 scopus 로고    scopus 로고
    • RNAbinding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts
    • Steinmetz, E.J., Conrad, N.K., Brow, D.A., and Corden, J.L. (2001) RNAbinding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts. Nature, 413, 327-331.
    • (2001) Nature , vol.413 , pp. 327-331
    • Steinmetz, E.J.1    Conrad, N.K.2    Brow, D.A.3    Corden, J.L.4
  • 41
    • 0029960432 scopus 로고    scopus 로고
    • Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1
    • Steinmetz, E.J. and Brow, D.A. (1996) Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1. Mol. Cell. Biol., 16, 6993-7003.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6993-7003
    • Steinmetz, E.J.1    Brow, D.A.2
  • 42
    • 0032499774 scopus 로고    scopus 로고
    • Control of pre-mRNA accumulation by the essential yeast protein Nrd1 requires high-affinity transcript binding and a domain implicated in RNA polymerase II association
    • Steinmetz, E.J. and Brow, D.A. (1998) Control of pre-mRNA accumulation by the essential yeast protein Nrd1 requires high-affinity transcript binding and a domain implicated in RNA polymerase II association. Proc. Natl. Acad. Sci. U.S.A., 95, 6699-6704.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 6699-6704
    • Steinmetz, E.J.1    Brow, D.A.2
  • 43
    • 30744467674 scopus 로고    scopus 로고
    • Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts
    • Vasiljeva, L. and Buratowski, S. (2006) Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. Mol. Cell, 21, 239-248.
    • (2006) Mol. Cell , vol.21 , pp. 239-248
    • Vasiljeva, L.1    Buratowski, S.2
  • 44
    • 49449110180 scopus 로고    scopus 로고
    • The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
    • Vasiljeva, L., Kim, M., Mutschler, H., Buratowski, S., and Meinhart, A. (2008) The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat. Struct. Mol. Biol., 15, 795-804.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 795-804
    • Vasiljeva, L.1    Kim, M.2    Mutschler, H.3    Buratowski, S.4    Meinhart, A.5
  • 45
    • 33644784770 scopus 로고    scopus 로고
    • Accumulation of unstable promoterassociated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
    • Davis, C.A. and Ares, M., Jr. (2006) Accumulation of unstable promoterassociated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A., 103, 3262-3267.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 3262-3267
    • Davis, C.A.1    Ares, M.2
  • 48
    • 33645229776 scopus 로고    scopus 로고
    • Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway
    • Samanta, M.P., Tongprasit, W., Sethi, H., Chin, C.S., and Stolc, V. (2006) Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proc. Natl. Acad. Sci. U.S.A., 103, 4192-4197.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 4192-4197
    • Samanta, M.P.1    Tongprasit, W.2    Sethi, H.3    Chin, C.S.4    Stolc, V.5
  • 49
    • 33751504083 scopus 로고    scopus 로고
    • Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase
    • Steinmetz, E.J., Warren, C.L., Kuehner, J.N., Panbehi, B., Ansari, A.Z., and Brow, D.A. (2006) Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. Mol. Cell, 24, 735.
    • (2006) Mol. Cell , vol.24 , pp. 735
    • Steinmetz, E.J.1    Warren, C.L.2    Kuehner, J.N.3    Panbehi, B.4    Ansari, A.Z.5    Brow, D.A.6
  • 50
    • 33748424364 scopus 로고    scopus 로고
    • Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
    • Arigo, J.T., Eyler, D.E., Carroll, K.L., and Corden, J.L. (2006) Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol. Cell, 23, 841.
    • (2006) Mol. Cell , vol.23 , pp. 841
    • Arigo, J.T.1    Eyler, D.E.2    Carroll, K.L.3    Corden, J.L.4
  • 51
    • 33748435751 scopus 로고    scopus 로고
    • Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance
    • Thiebaut, M., Kisseleva-Romanova, E., Rougemaille, M., Boulay, J., and Libri, D. (2006) Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol. Cell, 23, 853-864.
    • (2006) Mol. Cell , vol.23 , pp. 853-864
    • Thiebaut, M.1    Kisseleva-Romanova, E.2    Rougemaille, M.3    Boulay, J.4    Libri, D.5
  • 54
    • 33749535437 scopus 로고    scopus 로고
    • CUT it out: silencing of noise in the transcriptome
    • Lykke-Andersen, S. and Jensen, T.H. (2006) CUT it out: silencing of noise in the transcriptome. Nat. Struct. Mol. Biol., 13, 860-861.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 860-861
    • Lykke-Andersen, S.1    Jensen, T.H.2
  • 56
    • 0345269802 scopus 로고    scopus 로고
    • Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast
    • Ganem, C., Devaux, F., Torchet, C., Jacq, C., Quevillon-Cheruel, S., Labesse, G., Facca, C., and Faye, G. (2003) Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast. EMBO J., 22, 1588-1598.
    • (2003) EMBO J. , vol.22 , pp. 1588-1598
    • Ganem, C.1    Devaux, F.2    Torchet, C.3    Jacq, C.4    Quevillon-Cheruel, S.5    Labesse, G.6    Facca, C.7    Faye, G.8
  • 57
    • 0041690972 scopus 로고    scopus 로고
    • Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription
    • Steinmetz, E.J. and Brow, D.A. (2003) Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription. Mol. Cell. Biol., 23, 6339-6349.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 6339-6349
    • Steinmetz, E.J.1    Brow, D.A.2
  • 58
    • 2442672784 scopus 로고    scopus 로고
    • Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation
    • Dichtl, B., Aasland, R., and Keller, W. (2004) Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation. RNA, 10, 965-977.
    • (2004) RNA , vol.10 , pp. 965-977
    • Dichtl, B.1    Aasland, R.2    Keller, W.3
  • 59
    • 26944479278 scopus 로고    scopus 로고
    • A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation
    • Sheldon, K.E., Mauger, D.M., and Arndt, K.M. (2005) A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation. Mol. Cell, 20, 225-236.
    • (2005) Mol. Cell , vol.20 , pp. 225-236
    • Sheldon, K.E.1    Mauger, D.M.2    Arndt, K.M.3
  • 61
    • 37249063572 scopus 로고    scopus 로고
    • Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression
    • Egloff, S., O'Reilly, D., Chapman, R.D., Taylor, A., Tanzhaus, K., Pitts, L., Eick, D., and Murphy, S. (2007) Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression. Science, 318, 1777-1779.
    • (2007) Science , vol.318 , pp. 1777-1779
    • Egloff, S.1    O'Reilly, D.2    Chapman, R.D.3    Taylor, A.4    Tanzhaus, K.5    Pitts, L.6    Eick, D.7    Murphy, S.8
  • 62
    • 0035807308 scopus 로고    scopus 로고
    • Quality control of mRNA 3'-end processing is linked to the nuclear exosome
    • Hilleren, P., McCarthy, T., Rosbash, M., Parker, R., and Jensen, T.H. (2001) Quality control of mRNA 3'-end processing is linked to the nuclear exosome. Nature, 413, 538-542.
    • (2001) Nature , vol.413 , pp. 538-542
    • Hilleren, P.1    McCarthy, T.2    Rosbash, M.3    Parker, R.4    Jensen, T.H.5
  • 63
    • 0022969698 scopus 로고
    • 3' end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters
    • de Vegvar, H.E., Lund, E., and Dahlberg, J.E. (1986) 3' end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters. Cell, 47, 259-266.
    • (1986) Cell , vol.47 , pp. 259-266
    • de Vegvar, H.E.1    Lund, E.2    Dahlberg, J.E.3
  • 64
    • 0022975147 scopus 로고
    • Formation of the 3' end of U1 snRNA requires compatible snRNA promoter elements
    • Hernandez, N. and Weiner, A.M. (1986) Formation of the 3' end of U1 snRNA requires compatible snRNA promoter elements. Cell, 47, 249-258.
    • (1986) Cell , vol.47 , pp. 249-258
    • Hernandez, N.1    Weiner, A.M.2
  • 65
    • 84984930169 scopus 로고
    • A TBP-TAF complex required for transcription of human snRNA genes by RNA polymerase II and III
    • Henry, R.W., Sadowski, C.L., Kobayashi, R., and Hernandez, N. (1995) A TBP-TAF complex required for transcription of human snRNA genes by RNA polymerase II and III. Nature, 374, 653-656.
    • (1995) Nature , vol.374 , pp. 653-656
    • Henry, R.W.1    Sadowski, C.L.2    Kobayashi, R.3    Hernandez, N.4
  • 66
    • 26844493853 scopus 로고    scopus 로고
    • Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II
    • Baillat, D., Hakimi, M.A., Naar, A.M., Shilatifard, A., Cooch, N., and Shiekhattar, R. (2005) Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell, 123, 265-276.
    • (2005) Cell , vol.123 , pp. 265-276
    • Baillat, D.1    Hakimi, M.A.2    Naar, A.M.3    Shilatifard, A.4    Cooch, N.5    Shiekhattar, R.6
  • 67
    • 0030803670 scopus 로고    scopus 로고
    • Hrp1, a sequencespecific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast
    • Kessler, M.M., Henry, M.F., Shen, E., Zhao, J., Gross, S., Silver, P.A., and Moore, C.L. (1997) Hrp1, a sequencespecific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast. Genes Dev., 11, 2545-2556.
    • (1997) Genes Dev. , vol.11 , pp. 2545-2556
    • Kessler, M.M.1    Henry, M.F.2    Shen, E.3    Zhao, J.4    Gross, S.5    Silver, P.A.6    Moore, C.L.7
  • 68
    • 21844435714 scopus 로고    scopus 로고
    • Np13 is an antagonist of mRNA 3' end formation by RNA polymerase II
    • Bucheli, M.E. and Buratowski, S. (2005) Np13 is an antagonist of mRNA 3' end formation by RNA polymerase II. EMBO J., 24, 2150-2160.
    • (2005) EMBO J. , vol.24 , pp. 2150-2160
    • Bucheli, M.E.1    Buratowski, S.2
  • 69
    • 3242707680 scopus 로고    scopus 로고
    • Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast
    • Morlando, M., Ballarino, M., Greco, P., Caffarelli, E., Dichtl, B., and Bozzoni, I. (2004) Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast. EMBO J., 23, 2392-2401.
    • (2004) EMBO J. , vol.23 , pp. 2392-2401
    • Morlando, M.1    Ballarino, M.2    Greco, P.3    Caffarelli, E.4    Dichtl, B.5    Bozzoni, I.6
  • 70
    • 20744440616 scopus 로고    scopus 로고
    • The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae
    • Ballarino, M., Morlando, M., Pagano, F., Fatica, A., and Bozzoni, I. (2005) The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol., 25, 5396-5403.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 5396-5403
    • Ballarino, M.1    Morlando, M.2    Pagano, F.3    Fatica, A.4    Bozzoni, I.5
  • 71
    • 16244366466 scopus 로고    scopus 로고
    • Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly
    • Yang, P.K., Hoareau, C., Froment, C., Monsarrat, B., Henry, Y., and Chanfreau, G. (2005) Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly. Mol. Cell. Biol., 25, 3295-3304.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 3295-3304
    • Yang, P.K.1    Hoareau, C.2    Froment, C.3    Monsarrat, B.4    Henry, Y.5    Chanfreau, G.6
  • 72
    • 0035876112 scopus 로고    scopus 로고
    • Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor
    • Dichtl, B. and Keller, W. (2001) Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor. EMBO J., 20, 3197-3209.
    • (2001) EMBO J. , vol.20 , pp. 3197-3209
    • Dichtl, B.1    Keller, W.2
  • 73
    • 0035162071 scopus 로고    scopus 로고
    • Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation
    • Gross, S. and Moore, C.L. (2001) Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation. Mol. Cell. Biol., 21, 8045-8055.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 8045-8055
    • Gross, S.1    Moore, C.L.2
  • 74
    • 52049086511 scopus 로고    scopus 로고
    • Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii
    • Shen, Y., Liu, Y., Liu, L., Liang, C., and Li, Q.Q. (2008) Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii. Genetics, 179, 167-176.
    • (2008) Genetics , vol.179 , pp. 167-176
    • Shen, Y.1    Liu, Y.2    Liu, L.3    Liang, C.4    Li, Q.Q.5
  • 75
  • 76
    • 49449105283 scopus 로고    scopus 로고
    • Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice
    • Gudipati, R.K., Villa, T., Boulay, J., and Libri, D. (2008) Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice. Nat. Struct. Mol. Biol., 15, 786-794.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 786-794
    • Gudipati, R.K.1    Villa, T.2    Boulay, J.3    Libri, D.4
  • 77
    • 33344478052 scopus 로고    scopus 로고
    • Regulation of yeast NRD1 expression by premature transcription termination
    • Arigo, J.T., Carroll, K.L., Ames, J.M., and Corden, J.L. (2006) Regulation of yeast NRD1 expression by premature transcription termination. Mol. Cell, 21, 641-651.
    • (2006) Mol. Cell , vol.21 , pp. 641-651
    • Arigo, J.T.1    Carroll, K.L.2    Ames, J.M.3    Corden, J.L.4
  • 78
    • 47349099971 scopus 로고    scopus 로고
    • Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation
    • Kuehner, J.N. and Brow, D.A. (2008) Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation. Mol. Cell, 31, 201-211.
    • (2008) Mol. Cell , vol.31 , pp. 201-211
    • Kuehner, J.N.1    Brow, D.A.2
  • 79
    • 44949166705 scopus 로고    scopus 로고
    • Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast
    • Jenks, M.H., O'Rourke, T.W., and Reines, D. (2008) Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast. Mol. Cell. Biol., 28, 3883-3893.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 3883-3893
    • Jenks, M.H.1    O'Rourke, T.W.2    Reines, D.3
  • 80
    • 50249183162 scopus 로고    scopus 로고
    • Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae
    • Thiebaut, M., Colin, J., Neil, H., Jacquier, A., Seraphin, B., Lacroute, F., and Libri, D. (2008) Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae. Mol. Cell, 31, 671-682.
    • (2008) Mol. Cell , vol.31 , pp. 671-682
    • Thiebaut, M.1    Colin, J.2    Neil, H.3    Jacquier, A.4    Seraphin, B.5    Lacroute, F.6    Libri, D.7
  • 81
    • 17644366759 scopus 로고    scopus 로고
    • Transcription attenuation: a highly conserved regulatory strategy used by bacteria
    • Merino, E. and Yanofsky, C. (2005) Transcription attenuation: a highly conserved regulatory strategy used by bacteria. Trends Genet., 21, 260-264.
    • (2005) Trends Genet. , vol.21 , pp. 260-264
    • Merino, E.1    Yanofsky, C.2
  • 83
    • 34447098370 scopus 로고    scopus 로고
    • A chromatin landmark and transcription initiation at most promoters in human cells
    • Guenther, M.G., Levine, S.S., Boyer, L.A., Jaenisch, R., and Young, R.A. (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell, 130, 77-88.
    • (2007) Cell , vol.130 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3    Jaenisch, R.4    Young, R.A.5
  • 86
    • 0029791943 scopus 로고    scopus 로고
    • Distinct activated and nonactivated RNA polymerase II complexes in yeast
    • Akhtar, A., Faye, G., and Bentley, D.L. (1996) Distinct activated and nonactivated RNA polymerase II complexes in yeast. EMBO J., 15, 4654-4664.
    • (1996) EMBO J. , vol.15 , pp. 4654-4664
    • Akhtar, A.1    Faye, G.2    Bentley, D.L.3
  • 88
    • 0033515521 scopus 로고    scopus 로고
    • NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
    • Yamaguchi, Y., Takagi, T., Wada, T., Yano, K., Furuya, A., Sugimoto, S., Hasegawa, J., and Handa, H. (1999) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell, 97, 41-51.
    • (1999) Cell , vol.97 , pp. 41-51
    • Yamaguchi, Y.1    Takagi, T.2    Wada, T.3    Yano, K.4    Furuya, A.5    Sugimoto, S.6    Hasegawa, J.7    Handa, H.8
  • 89
    • 36048949269 scopus 로고    scopus 로고
    • Imaging Drosophila gene activation and polymerase pausing in vivo
    • Lis, J.T. (2007) Imaging Drosophila gene activation and polymerase pausing in vivo. Nature, 450, 198-202.
    • (2007) Nature , vol.450 , pp. 198-202
    • Lis, J.T.1
  • 90
    • 0041856309 scopus 로고    scopus 로고
    • Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends
    • Nedea, E., He, X., Kim, M., Pootoolal, J., Zhong, G., Canadien, V., Hughes, T., Buratowski, S., Moore, C.L., and Greenblatt, J. (2003) Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends. J. Biol. Chem., 278, 33000-33010.
    • (2003) J. Biol. Chem. , vol.278 , pp. 33000-33010
    • Nedea, E.1    He, X.2    Kim, M.3    Pootoolal, J.4    Zhong, G.5    Canadien, V.6    Hughes, T.7    Buratowski, S.8    Moore, C.L.9    Greenblatt, J.10
  • 91
    • 34347401642 scopus 로고    scopus 로고
    • Transcription termination factor Pcf11 limits the processivity of Pol II on an HIV provirus to repress gene expression
    • Zhang, Z., Klatt, A., Henderson, A.J., and Gilmour, D.S. (2007) Transcription termination factor Pcf11 limits the processivity of Pol II on an HIV provirus to repress gene expression. Genes Dev., 21, 1609-1614.
    • (2007) Genes Dev. , vol.21 , pp. 1609-1614
    • Zhang, Z.1    Klatt, A.2    Henderson, A.J.3    Gilmour, D.S.4
  • 92
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core, L.J., Waterfall, J.J., and Lis, J.T. (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 93
    • 84858165145 scopus 로고    scopus 로고
    • Genome-wide structure and organization of eukaryotic pre-initiation complexes
    • Rhee, H.S. and Pugh, B.F. (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature, 483, 295-301.
    • (2012) Nature , vol.483 , pp. 295-301
    • Rhee, H.S.1    Pugh, B.F.2
  • 95
    • 0029024239 scopus 로고
    • 5'-Exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5'-exonuclease-1
    • Stevens, A. and Poole, T.L. (1995) 5'-Exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5'-exonuclease-1. J. Biol. Chem., 270, 16063-16069.
    • (1995) J. Biol. Chem. , vol.270 , pp. 16063-16069
    • Stevens, A.1    Poole, T.L.2
  • 96
    • 76849114364 scopus 로고    scopus 로고
    • The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II
    • Jimeno-Gonzalez, S., Haaning, L.L., Malagon, F., and Jensen, T.H. (2010) The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II. Mol. Cell, 37, 580-587.
    • (2010) Mol. Cell , vol.37 , pp. 580-587
    • Jimeno-Gonzalez, S.1    Haaning, L.L.2    Malagon, F.3    Jensen, T.H.4
  • 97
    • 77957340903 scopus 로고    scopus 로고
    • Identification of a quality-control mechanism for mRNA 5'-end capping
    • Jiao, X., Xiang, S., Oh, C., Martin, C.E., Tong, L., and Kiledjian, M. (2010) Identification of a quality-control mechanism for mRNA 5'-end capping. Nature, 467, 608-611.
    • (2010) Nature , vol.467 , pp. 608-611
    • Jiao, X.1    Xiang, S.2    Oh, C.3    Martin, C.E.4    Tong, L.5    Kiledjian, M.6
  • 98
    • 2942560254 scopus 로고    scopus 로고
    • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
    • Martens, J.A., Laprade, L., and Winston, F. (2004) Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature, 429, 571-574.
    • (2004) Nature , vol.429 , pp. 571-574
    • Martens, J.A.1    Laprade, L.2    Winston, F.3
  • 99
    • 33845698923 scopus 로고    scopus 로고
    • Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts
    • Bird, A.J., Gordon, M., Eide, D.J., and Winge, D.R. (2006) Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts. EMBO J., 25, 5726-5734.
    • (2006) EMBO J. , vol.25 , pp. 5726-5734
    • Bird, A.J.1    Gordon, M.2    Eide, D.J.3    Winge, D.R.4
  • 102
    • 0024615290 scopus 로고
    • The regulated production of mu m and mu s mRNA is dependent on the relative efficiencies of mu s poly(A) site usage and the c mu 4-to-M1 splice
    • Peterson, M.L. and Perry, R.P. (1989) The regulated production of mu m and mu s mRNA is dependent on the relative efficiencies of mu s poly(A) site usage and the c mu 4-to-M1 splice. Mol. Cell. Biol., 9, 726-738.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 726-738
    • Peterson, M.L.1    Perry, R.P.2
  • 103
    • 13744254695 scopus 로고    scopus 로고
    • A large-scale analysis of mRNA polyadenylation of human and mouse genes
    • Tian, B., Hu, J., Zhang, H., and Lutz, C.S. (2005) A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res., 33, 201-212.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 201-212
    • Tian, B.1    Hu, J.2    Zhang, H.3    Lutz, C.S.4
  • 104
    • 33747586532 scopus 로고    scopus 로고
    • Conservation of alternative polyadenylation patterns in mammalian genes
    • Ara, T., Lopez, F., Ritchie, W., Benech, P., and Gautheret, D. (2006) Conservation of alternative polyadenylation patterns in mammalian genes. BMC Genomics, 7, 189.
    • (2006) BMC Genomics , vol.7 , pp. 189
    • Ara, T.1    Lopez, F.2    Ritchie, W.3    Benech, P.4    Gautheret, D.5
  • 105
    • 33846059244 scopus 로고    scopus 로고
    • PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes
    • Lee, J.Y., Yeh, I., Park, J.Y., and Tian, B. (2007) PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. Nucleic Acids Res, 35, D165-D168.
    • (2007) Nucleic Acids Res , vol.35 , pp. D165-D168
    • Lee, J.Y.1    Yeh, I.2    Park, J.Y.3    Tian, B.4
  • 106
    • 55249096744 scopus 로고    scopus 로고
    • Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes
    • Lee, J.Y., Ji, Z., and Tian, B. (2008) Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes. Nucleic Acids Res., 36, 5581-5590.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5581-5590
    • Lee, J.Y.1    Ji, Z.2    Tian, B.3
  • 107
    • 27244444905 scopus 로고    scopus 로고
    • Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures
    • Loke, J.C., Stahlberg, E.A., Strenski, D.G., Haas, B.J., Wood, P.C., and Li, Q.Q. (2005) Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures. Plant Physiol., 138, 1457-1468.
    • (2005) Plant Physiol. , vol.138 , pp. 1457-1468
    • Loke, J.C.1    Stahlberg, E.A.2    Strenski, D.G.3    Haas, B.J.4    Wood, P.C.5    Li, Q.Q.6
  • 108
    • 44349130371 scopus 로고    scopus 로고
    • Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation
    • Shen, Y., Ji, G., Haas, B.J., Wu, X., Zheng, J., Reese, G.J., and Li, Q.Q. (2008) Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation. Nucleic Acids Res., 36, 3150-3161.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3150-3161
    • Shen, Y.1    Ji, G.2    Haas, B.J.3    Wu, X.4    Zheng, J.5    Reese, G.J.6    Li, Q.Q.7
  • 109
    • 31544434026 scopus 로고    scopus 로고
    • Brain-specific promoter and polyadenylation sites of the beta-adducin pre-mRNA generate an unusually long 3'-UTR
    • Costessi, L., Devescovi, G., Baralle, F.E., and Muro, A.F. (2006) Brain-specific promoter and polyadenylation sites of the beta-adducin pre-mRNA generate an unusually long 3'-UTR. Nucleic Acids Res., 34, 243-253.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 243-253
    • Costessi, L.1    Devescovi, G.2    Baralle, F.E.3    Muro, A.F.4
  • 110
    • 39749107403 scopus 로고    scopus 로고
    • Alternative polyadenylation signals and promoters act in concert to control tissue-specific expression of the Opitz syndrome gene MID1
    • Winter, J., Kunath, M., Roepcke, S., Krause, S., Schneider, R., and Schweiger, S. (2007) Alternative polyadenylation signals and promoters act in concert to control tissue-specific expression of the Opitz syndrome gene MID1. BMC Mol. Biol., 8, 105.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 105
    • Winter, J.1    Kunath, M.2    Roepcke, S.3    Krause, S.4    Schneider, R.5    Schweiger, S.6
  • 111
    • 30744474178 scopus 로고    scopus 로고
    • Structural differentiation of the HIV-1 polyA signals
    • Gee, A.H., Kasprzak, W., and Shapiro, B.A. (2006) Structural differentiation of the HIV-1 polyA signals. J. Biomol. Struct. Dyn., 23, 417-428.
    • (2006) J. Biomol. Struct. Dyn. , vol.23 , pp. 417-428
    • Gee, A.H.1    Kasprzak, W.2    Shapiro, B.A.3
  • 112
    • 0030606286 scopus 로고    scopus 로고
    • The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation
    • Takagaki, Y., Seipelt, R.L., Peterson, M.L., and Manley, J.L. (1996) The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation. Cell, 87, 941-952.
    • (1996) Cell , vol.87 , pp. 941-952
    • Takagaki, Y.1    Seipelt, R.L.2    Peterson, M.L.3    Manley, J.L.4
  • 114
    • 33847076533 scopus 로고    scopus 로고
    • Hu proteins regulate polyadenylation by blocking sites containing U-rich sequences
    • Zhu, H., Zhou, H.L., Hasman, R.A., and Lou, H. (2007) Hu proteins regulate polyadenylation by blocking sites containing U-rich sequences. J. Biol. Chem., 282, 2203-2210.
    • (2007) J. Biol. Chem. , vol.282 , pp. 2203-2210
    • Zhu, H.1    Zhou, H.L.2    Hasman, R.A.3    Lou, H.4
  • 115
    • 33646437290 scopus 로고    scopus 로고
    • Alternative 3' UTR polyadenylation of Bzw1 transcripts display differential translation efficiency and tissue-specific expression
    • Yu, M., Sha, H., Gao, Y., Zeng, H., Zhu, M., and Gao, X. (2006) Alternative 3' UTR polyadenylation of Bzw1 transcripts display differential translation efficiency and tissue-specific expression. Biochem. Biophys. Res. Commun., 345, 479-485.
    • (2006) Biochem. Biophys. Res. Commun. , vol.345 , pp. 479-485
    • Yu, M.1    Sha, H.2    Gao, Y.3    Zeng, H.4    Zhu, M.5    Gao, X.6
  • 116
    • 33646950851 scopus 로고    scopus 로고
    • Biased alternative polyadenylation in human tissues
    • Zhang, H., Lee, J.Y., and Tian, B. (2005) Biased alternative polyadenylation in human tissues. Genome Biol., 6, R100.
    • (2005) Genome Biol. , vol.6 , pp. R100
    • Zhang, H.1    Lee, J.Y.2    Tian, B.3
  • 118
    • 0027523912 scopus 로고
    • The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae
    • Lang, W.H. and Reeder, R.H. (1993) The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 649-658.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 649-658
    • Lang, W.H.1    Reeder, R.H.2
  • 119
    • 0023053576 scopus 로고
    • A repeated 18 bp sequence motif in the mouse rDNA spacer mediates binding of a nuclear factor and transcription termination
    • Grummt, I., Rosenbauer, H., Niedermeyer, I., Maier, U., and Ohrlein, A. (1986) A repeated 18 bp sequence motif in the mouse rDNA spacer mediates binding of a nuclear factor and transcription termination. Cell, 45, 837-846.
    • (1986) Cell , vol.45 , pp. 837-846
    • Grummt, I.1    Rosenbauer, H.2    Niedermeyer, I.3    Maier, U.4    Ohrlein, A.5
  • 120
    • 0025208232 scopus 로고
    • Specific interaction of the murine transcription termination factor TTF I with class-I RNA polymerases
    • Kuhn, A., Bartsch, I., and Grummt, I. (1990) Specific interaction of the murine transcription termination factor TTF I with class-I RNA polymerases. Nature, 344, 559-562.
    • (1990) Nature , vol.344 , pp. 559-562
    • Kuhn, A.1    Bartsch, I.2    Grummt, I.3
  • 121
    • 0028865507 scopus 로고
    • The release element of the yeast polymerase I transcription terminator can function independently of Reb1p
    • Jeong, S.W., Lang, W.H., and Reeder, R.H. (1995) The release element of the yeast polymerase I transcription terminator can function independently of Reb1p. Mol. Cell. Biol., 15, 5929-5936.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5929-5936
    • Jeong, S.W.1    Lang, W.H.2    Reeder, R.H.3
  • 122
    • 0028824921 scopus 로고
    • Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p
    • Lang, W.H. and Reeder, R.H. (1995) Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p. Proc. Natl. Acad. Sci. U.S.A., 92, 9781-9785.
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 9781-9785
    • Lang, W.H.1    Reeder, R.H.2
  • 123
    • 0033031442 scopus 로고    scopus 로고
    • Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3' ETS but not the 5' ETS
    • Kufel, J., Dichtl, B., and Tollervey, D. (1999) Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3' ETS but not the 5' ETS. RNA, 5, 909-917.
    • (1999) RNA , vol.5 , pp. 909-917
    • Kufel, J.1    Dichtl, B.2    Tollervey, D.3
  • 125
    • 37849016860 scopus 로고    scopus 로고
    • Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast
    • Catala, M., Tremblay, M., Samson, E., Conconi, A., and Abou Elela, S. (2008) Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast. Mol. Cell. Biol., 28, 619-629.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 619-629
    • Catala, M.1    Tremblay, M.2    Samson, E.3    Conconi, A.4    Abou Elela, S.5
  • 126
    • 42149123284 scopus 로고    scopus 로고
    • Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast
    • El Hage, A., Koper, M., Kufel, J., and Tollervey, D. (2008) Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast. Genes Dev., 22, 1069-1081.
    • (2008) Genes Dev. , vol.22 , pp. 1069-1081
    • El Hage, A.1    Koper, M.2    Kufel, J.3    Tollervey, D.4
  • 127
    • 42149154858 scopus 로고    scopus 로고
    • Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination
    • Kawauchi, J., Mischo, H., Braglia, P., Rondon, A., and Proudfoot, N.J. (2008) Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination. Genes Dev., 22, 1082-1092.
    • (2008) Genes Dev. , vol.22 , pp. 1082-1092
    • Kawauchi, J.1    Mischo, H.2    Braglia, P.3    Rondon, A.4    Proudfoot, N.J.5
  • 128
    • 0032696407 scopus 로고    scopus 로고
    • Mechanism of transcription termination: PTRF interacts with the largest subunit of RNA polymerase I and dissociates paused transcription complexes from yeast and mouse
    • Jansa, P. and Grummt, I. (1999) Mechanism of transcription termination: PTRF interacts with the largest subunit of RNA polymerase I and dissociates paused transcription complexes from yeast and mouse. Mol. Gen. Genet., 262, 508-514.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 508-514
    • Jansa, P.1    Grummt, I.2
  • 131
    • 0022134436 scopus 로고
    • Effects of alterations in the 3' flanking sequence on in vivo and in vitro expression of the yeast SUP4-o tRNATyr gene
    • Allison, D.S. and Hall, B.D. (1985) Effects of alterations in the 3' flanking sequence on in vivo and in vitro expression of the yeast SUP4-o tRNATyr gene. EMBO J., 4, 2657-2664.
    • (1985) EMBO J. , vol.4 , pp. 2657-2664
    • Allison, D.S.1    Hall, B.D.2
  • 132
    • 0034666017 scopus 로고    scopus 로고
    • Transcription termination by RNA polymerase III in fission yeast. A genetic and biochemically tractable model system
    • Hamada, M., Sakulich, A.L., Koduru, S.B., and Maraia, R.J. (2000) Transcription termination by RNA polymerase III in fission yeast. A genetic and biochemically tractable model system. J. Biol. Chem., 275, 29076-29081.
    • (2000) J. Biol. Chem. , vol.275 , pp. 29076-29081
    • Hamada, M.1    Sakulich, A.L.2    Koduru, S.B.3    Maraia, R.J.4
  • 133
    • 21244449939 scopus 로고    scopus 로고
    • Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III
    • Braglia, P., Percudani, R., and Dieci, G. (2005) Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III. J. Biol. Chem., 280, 19551-19562.
    • (2005) J. Biol. Chem. , vol.280 , pp. 19551-19562
    • Braglia, P.1    Percudani, R.2    Dieci, G.3
  • 134
    • 0019331859 scopus 로고
    • DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription
    • Martin, F.H. and Tinoco, I., Jr. (1980) DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription. Nucleic Acids Res., 8, 2295-2299.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 2295-2299
    • Martin, F.H.1    Tinoco, I.2
  • 135
    • 0019468489 scopus 로고
    • Nucleotide sequences in Xenopus 5S DNA required for transcription termination
    • Bogenhagen, D.F. and Brown, D.D. (1981) Nucleotide sequences in Xenopus 5S DNA required for transcription termination. Cell, 24, 261-270.
    • (1981) Cell , vol.24 , pp. 261-270
    • Bogenhagen, D.F.1    Brown, D.D.2
  • 136
    • 30444450804 scopus 로고    scopus 로고
    • A subcomplex of RNA polymerase III subunits involved in transcription termination and reinitiation
    • Landrieux, E., Alic, N., Ducrot, C., Acker, J., Riva, M., and Carles, C. (2006) A subcomplex of RNA polymerase III subunits involved in transcription termination and reinitiation. EMBO J., 25, 118-128.
    • (2006) EMBO J. , vol.25 , pp. 118-128
    • Landrieux, E.1    Alic, N.2    Ducrot, C.3    Acker, J.4    Riva, M.5    Carles, C.6
  • 138
    • 4744360999 scopus 로고    scopus 로고
    • A proteome-wide approach identifies sumoylated substrate proteins in yeast
    • Panse, V.G., Hardeland, U., Werner, T., Kuster, B., and Hurt, E. (2004) A proteome-wide approach identifies sumoylated substrate proteins in yeast. J. Biol. Chem., 279, 41346-41351.
    • (2004) J. Biol. Chem. , vol.279 , pp. 41346-41351
    • Panse, V.G.1    Hardeland, U.2    Werner, T.3    Kuster, B.4    Hurt, E.5
  • 139
    • 37549012161 scopus 로고    scopus 로고
    • Sumoylation modulates the assembly and activity of the pre-mRNA 3' processing complex
    • Vethantham, V., Rao, N., and Manley, J.L. (2007) Sumoylation modulates the assembly and activity of the pre-mRNA 3' processing complex. Mol. Cell. Biol., 27, 8848-8858.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 8848-8858
    • Vethantham, V.1    Rao, N.2    Manley, J.L.3
  • 140
    • 39449103526 scopus 로고    scopus 로고
    • Sumoylation regulates multiple aspects of mammalian poly(A) polymerase function
    • Vethantham, V., Rao, N., and Manley, J.L. (2008) Sumoylation regulates multiple aspects of mammalian poly(A) polymerase function. Genes Dev., 22, 499-511.
    • (2008) Genes Dev. , vol.22 , pp. 499-511
    • Vethantham, V.1    Rao, N.2    Manley, J.L.3
  • 141
    • 84861381437 scopus 로고    scopus 로고
    • The S. cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to ras signaling and mediates response to nutrient depletion
    • Darby, M.M., Serebreni, L., Pan, X., Boeke, J.D., and Corden, J.L. (2012) The S. cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to ras signaling and mediates response to nutrient depletion. Mol. Cell. Biol., 32, 1762-1775.
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 1762-1775
    • Darby, M.M.1    Serebreni, L.2    Pan, X.3    Boeke, J.D.4    Corden, J.L.5
  • 143
    • 33745131439 scopus 로고    scopus 로고
    • Senataxin, the yeast Sen1p orthologue: characterization of a unique protein in which recessive mutations cause ataxia and dominant mutations cause motor neuron disease
    • Chen, Y.Z., Hashemi, S.H., Anderson, S.K., Huang, Y., Moreira, M.C., Lynch, D.R., Glass, I.A., Chance, P.F., and Bennett, C.L. (2006) Senataxin, the yeast Sen1p orthologue: characterization of a unique protein in which recessive mutations cause ataxia and dominant mutations cause motor neuron disease. Neurobiol. Dis., 23, 97-108.
    • (2006) Neurobiol. Dis. , vol.23 , pp. 97-108
    • Chen, Y.Z.1    Hashemi, S.H.2    Anderson, S.K.3    Huang, Y.4    Moreira, M.C.5    Lynch, D.R.6    Glass, I.A.7    Chance, P.F.8    Bennett, C.L.9
  • 144
    • 0036928142 scopus 로고    scopus 로고
    • A role for chromatin remodeling in transcriptional termination by RNA polymerase II
    • Alen, C., Kent, N.A., Jones, H.S., O'Sullivan, J., Aranda, A., and Proudfoot, N.J. (2002) A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Mol. Cell, 10, 1441-1452.
    • (2002) Mol. Cell , vol.10 , pp. 1441-1452
    • Alen, C.1    Kent, N.A.2    Jones, H.S.3    O'Sullivan, J.4    Aranda, A.5    Proudfoot, N.J.6


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