-
1
-
-
1542288938
-
Global organization of metabolic fluxes in the bacterium Escherichia coli
-
Almaas, E., Kovács, B., Vicsek, T., Oltvai, Z.N., Barabási, a-L., Global organization of metabolic fluxes in the bacterium Escherichia coli. Nature 427 (2004), 839-843, 10.1038/nature02289.
-
(2004)
Nature
, vol.427
, pp. 839-843
-
-
Almaas, E.1
Kovács, B.2
Vicsek, T.3
Oltvai, Z.N.4
Barabási, A.-L.5
-
2
-
-
0035026055
-
Two fold reduction of phosphofructokinase activity in lactococcus lactis results in strong decreases in growth rate and in glycolytic flux
-
Andersen, H.W., Andersen, H.W., Solem, C., Solem, C., Hammer, K., Hammer, K., Two fold reduction of phosphofructokinase activity in lactococcus lactis results in strong decreases in growth rate and in glycolytic flux. J. Bacteriol. 183 (2001), 3458-3467, 10.1128/JB.183.11.3458.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3458-3467
-
-
Andersen, H.W.1
Andersen, H.W.2
Solem, C.3
Solem, C.4
Hammer, K.5
Hammer, K.6
-
3
-
-
18944388400
-
Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site
-
Barrière, C., Veiga-da-Cunha, M., Pons, N., Guédon, E., Hijum, Van, S, a F.T., Kok, J., Kuipers, O.P., Ehrlich, D.S., Renault, P., Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site. J. Bacteriol. 187 (2005), 3752-3761, 10.1128/JB.187.11.3752-3761.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3752-3761
-
-
Barrière, C.1
Veiga-da-Cunha, M.2
Pons, N.3
Guédon, E.4
Hijum, V.5
S, A.F.T.6
Kok, J.7
Kuipers, O.P.8
Ehrlich, D.S.9
Renault, P.10
-
4
-
-
77950891988
-
Importance of NADPH supply for improved L-valine formation in Corynebacterium glutamicum
-
Bartek, T., Blombach, B., Zonnchen, E., Makus, P., Lang, S., Eikmanns, B.J., Oldiges, M., Importance of NADPH supply for improved L-valine formation in Corynebacterium glutamicum. Biotechnol. Prog. 26 (2010), 361-371, 10.1002/btpr.345.
-
(2010)
Biotechnol. Prog.
, vol.26
, pp. 361-371
-
-
Bartek, T.1
Blombach, B.2
Zonnchen, E.3
Makus, P.4
Lang, S.5
Eikmanns, B.J.6
Oldiges, M.7
-
5
-
-
27744506402
-
Amplified expression of fructose 1, 6-bisphosphatase in corynebacterium glutamicum increases in vivo flux through the pentose phosphate pathway and lysine production on different carbon sources
-
Becker, J., Klopprogge, C., Zelder, O., Heinzle, E., Wittmann, C., Amplified expression of fructose 1, 6-bisphosphatase in corynebacterium glutamicum increases in vivo flux through the pentose phosphate pathway and lysine production on different carbon sources. Appl. Environ. Microbiol. 71 (2005), 8587-8596, 10.1128/AEM.71.12.8587.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8587-8596
-
-
Becker, J.1
Klopprogge, C.2
Zelder, O.3
Heinzle, E.4
Wittmann, C.5
-
6
-
-
79952106791
-
From zero to hero—design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production
-
Becker, J., Zelder, O., Häfner, S., Schröder, H., Wittmann, C., From zero to hero—design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production. Metab. Eng. 13 (2011), 159-168, 10.1016/j.ymben.2011.01.003.
-
(2011)
Metab. Eng.
, vol.13
, pp. 159-168
-
-
Becker, J.1
Zelder, O.2
Häfner, S.3
Schröder, H.4
Wittmann, C.5
-
7
-
-
0031978751
-
Fructose and mannose metabolism in Aeromonas hydrophila: identification of transport systems and catabolic pathways
-
Binet, M.R.B., Rager, M.N., Bouvet, O.M.M., Fructose and mannose metabolism in Aeromonas hydrophila: identification of transport systems and catabolic pathways. Microbiology 144 (1998), 1113-1121, 10.1099/00221287-144-4-1113.
-
(1998)
Microbiology
, vol.144
, pp. 1113-1121
-
-
Binet, M.R.B.1
Rager, M.N.2
Bouvet, O.M.M.3
-
8
-
-
0023369749
-
Sequence homologies between proteins of bacterial phosphoenolpyruvate-dependent sugar phosphotransferase systems: identification of possible phosphate-carrying histidine residues
-
Bramley, H.F., Kornberg, H.L., Sequence homologies between proteins of bacterial phosphoenolpyruvate-dependent sugar phosphotransferase systems: identification of possible phosphate-carrying histidine residues. Proc. Natl. Acad. Sci. USA 84 (1987), 4777-4780, 10.1073/pnas.84.14.4777.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4777-4780
-
-
Bramley, H.F.1
Kornberg, H.L.2
-
9
-
-
57449121815
-
Myo-inositol facilitators IolT1 and IolT2 enhance D-mannitol formation from D-fructose in Corynebacterium glutamicum
-
Bäumchen, C., Krings, E., Bringer, S., Eggeling, L., Sahm, H., Myo-inositol facilitators IolT1 and IolT2 enhance D-mannitol formation from D-fructose in Corynebacterium glutamicum. FEMS Microbiol. Lett. 290 (2009), 227-235, 10.1111/j.1574-6968.2008.01425.x.
-
(2009)
FEMS Microbiol. Lett.
, vol.290
, pp. 227-235
-
-
Bäumchen, C.1
Krings, E.2
Bringer, S.3
Eggeling, L.4
Sahm, H.5
-
10
-
-
84907483760
-
Altered sterol composition renders yeast thermotolerant
-
Caspeta, L., Chen, Y., Ghiaci, P., Feizi, a, Buskov, S., Hallstrom, B.M., Petranovic, D., Nielsen, J., Altered sterol composition renders yeast thermotolerant. Science 346 (2014), 75-78, 10.1126/science.1258137.
-
(2014)
Science
, vol.346
, pp. 75-78
-
-
Caspeta, L.1
Chen, Y.2
Ghiaci, P.3
Feizi, A.4
Buskov, S.5
Hallstrom, B.M.6
Petranovic, D.7
Nielsen, J.8
-
11
-
-
84899836375
-
Fructose 1-phosphate is the one and only physiological effector of the Cra (FruR) regulator of Pseudomonas putida
-
Chavarría, M., Durante-Rodríguez, G., Krell, T., Santiago, C., Brezovsky, J., Damborsky, J., de Lorenzo, V., Fructose 1-phosphate is the one and only physiological effector of the Cra (FruR) regulator of Pseudomonas putida. FEBS Open Bio 4 (2014), 377-386, 10.1016/j.fob.2014.03.013.
-
(2014)
FEBS Open Bio
, vol.4
, pp. 377-386
-
-
Chavarría, M.1
Durante-Rodríguez, G.2
Krell, T.3
Santiago, C.4
Brezovsky, J.5
Damborsky, J.6
de Lorenzo, V.7
-
12
-
-
84928889593
-
Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol
-
Cheng, K.-K., Lee, B.-S., Masuda, T., Ito, T., Ikeda, K., Hirayama, A., Deng, L., Dong, J., Shimizu, K., Soga, T., Tomita, M., Palsson, B.O., Robert, M., Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol. Nat. Commun., 5, 2014, 3233, 10.1038/ncomms4233.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3233
-
-
Cheng, K.-K.1
Lee, B.-S.2
Masuda, T.3
Ito, T.4
Ikeda, K.5
Hirayama, A.6
Deng, L.7
Dong, J.8
Shimizu, K.9
Soga, T.10
Tomita, M.11
Palsson, B.O.12
Robert, M.13
-
13
-
-
84884593859
-
Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system
-
Clore, G.M., Venditti, V., Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system. Trends Biochem. Sci. 38 (2013), 515-530, 10.1016/j.tibs.2013.08.003.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 515-530
-
-
Clore, G.M.1
Venditti, V.2
-
14
-
-
84860663163
-
Evolutionary insight from whole-genome sequencing of experimentally evolved microbes
-
Dettman, J.R., Rodrigue, N., Melnyk, A.H., Wong, A., Bailey, S.F., Kassen, R., Evolutionary insight from whole-genome sequencing of experimentally evolved microbes. Mol. Ecol. 21 (2012), 2058-2077, 10.1111/j.1365-294X.2012.05484.x.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 2058-2077
-
-
Dettman, J.R.1
Rodrigue, N.2
Melnyk, A.H.3
Wong, A.4
Bailey, S.F.5
Kassen, R.6
-
15
-
-
84901013706
-
The bacterial phosphoenolpyruvate: carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions
-
Deutscher, J., Aké, F.M.D., Derkaoui, M., Zébré, A.C., Cao, T.N., Bouraoui, H., Kentache, T., Mokhtari, A., Milohanic, E., Joyet, P., The bacterial phosphoenolpyruvate: carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions. Microbiol. Mol. Biol. Rev. 78 (2014), 231-256, 10.1128/MMBR.00001-14.
-
(2014)
Microbiol. Mol. Biol. Rev.
, vol.78
, pp. 231-256
-
-
Deutscher, J.1
Aké, F.M.D.2
Derkaoui, M.3
Zébré, A.C.4
Cao, T.N.5
Bouraoui, H.6
Kentache, T.7
Mokhtari, A.8
Milohanic, E.9
Joyet, P.10
-
16
-
-
33845626641
-
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria
-
Deutscher, J., Francke, C., Postma, P.W., How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol. Mol. Biol. Rev. 70 (2006), 939-1031, 10.1128/MMBR.00024-06.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 939-1031
-
-
Deutscher, J.1
Francke, C.2
Postma, P.W.3
-
17
-
-
0029781902
-
Complete sucrose metabolism requires fructose phosphotransferase activity in Corynebacterium glutamicum to ensure phosphorylation of liberated fructose
-
Dominguez, H., Lindley, N.D., Complete sucrose metabolism requires fructose phosphotransferase activity in Corynebacterium glutamicum to ensure phosphorylation of liberated fructose. Appl. Environ. Microbiol. 62 (1996), 3878-3880.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3878-3880
-
-
Dominguez, H.1
Lindley, N.D.2
-
18
-
-
0032524023
-
Carbon flux distribution in the central metabolic pathways of Corynebacterium glutamicum during growth on fructose
-
Dominguez, H., Rollin, C., Guyonvarch, A., Guerquin-Kern, J.L., Cocaign-Bousquet, M., Lindley, N.D., Carbon flux distribution in the central metabolic pathways of Corynebacterium glutamicum during growth on fructose. Eur. J. Biochem. 254 (1998), 96-102.
-
(1998)
Eur. J. Biochem.
, vol.254
, pp. 96-102
-
-
Dominguez, H.1
Rollin, C.2
Guyonvarch, A.3
Guerquin-Kern, J.L.4
Cocaign-Bousquet, M.5
Lindley, N.D.6
-
19
-
-
79959913950
-
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
-
Dunn, W.B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., Brown, M., Knowles, J.D., Halsall, A., Haselden, J.N., Nicholls, A.W., Wilson, I.D., Kell, D.B., Goodacre, R., Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat. Protoc. 6 (2011), 1060-1083, 10.1038/nprot.2011.335.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1060-1083
-
-
Dunn, W.B.1
Broadhurst, D.2
Begley, P.3
Zelena, E.4
Francis-McIntyre, S.5
Anderson, N.6
Brown, M.7
Knowles, J.D.8
Halsall, A.9
Haselden, J.N.10
Nicholls, A.W.11
Wilson, I.D.12
Kell, D.B.13
Goodacre, R.14
-
20
-
-
57349150249
-
The global repressor SugR controls expression of genes of glycolysis and of the L-lactate dehydrogenase LdhA in Corynebacterium glutamicum
-
Engels, V., Lindner, S.N., Wendisch, V.F., The global repressor SugR controls expression of genes of glycolysis and of the L-lactate dehydrogenase LdhA in Corynebacterium glutamicum. J. Bacteriol. 190 (2008), 8033-8044, 10.1128/JB.00705-08.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 8033-8044
-
-
Engels, V.1
Lindner, S.N.2
Wendisch, V.F.3
-
21
-
-
34247863848
-
The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum
-
Engels, V., Wendisch, V.F., The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum. J. Bacteriol. 189 (2007), 2955-2966, 10.1128/JB.01596-06.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2955-2966
-
-
Engels, V.1
Wendisch, V.F.2
-
22
-
-
34247863848
-
The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum
-
Engels, V., Wendisch, V.F., The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum. J. Bacteriol. 189 (2007), 2955-2966, 10.1128/JB.01596-06.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2955-2966
-
-
Engels, V.1
Wendisch, V.F.2
-
23
-
-
0015581911
-
The utilization of fructose by Escherichia coli. Properties of a mutant defective in fructose 1-phosphate kinase activity
-
Ferenci, T., Kornberg, H.L., The utilization of fructose by Escherichia coli. Properties of a mutant defective in fructose 1-phosphate kinase activity. Biochem. J. 132 (1973), 341-347.
-
(1973)
Biochem. J.
, vol.132
, pp. 341-347
-
-
Ferenci, T.1
Kornberg, H.L.2
-
24
-
-
38649112038
-
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum
-
Gaigalat, L., Schlüter, J.-P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., Kalinowski, J., The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Mol. Biol., 8, 2007, 104, 10.1186/1471-2199-8-104.
-
(2007)
BMC Mol. Biol.
, vol.8
, pp. 104
-
-
Gaigalat, L.1
Schlüter, J.-P.2
Hartmann, M.3
Mormann, S.4
Tauch, A.5
Pühler, A.6
Kalinowski, J.7
-
25
-
-
84941067064
-
Expanded microbial genome coverage and improved protein family annotation in the COG database
-
Galperin, M.Y., Makarova, K.S., Wolf, Y.I., Koonin, E.V., Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res. 43 (2014), D261-D269, 10.1093/nar/gku1223.
-
(2014)
Nucleic Acids Res.
, vol.43
, pp. D261-D269
-
-
Galperin, M.Y.1
Makarova, K.S.2
Wolf, Y.I.3
Koonin, E.V.4
-
26
-
-
79957842166
-
Computational methods for transcriptome annotation and quantification using RNA-seq
-
Garber, M., Grabherr, M.G., Guttman, M., Trapnell, C., Computational methods for transcriptome annotation and quantification using RNA-seq. Nat. Methods 8 (2011), 469-477, 10.1038/nmeth.1613.
-
(2011)
Nat. Methods
, vol.8
, pp. 469-477
-
-
Garber, M.1
Grabherr, M.G.2
Guttman, M.3
Trapnell, C.4
-
27
-
-
0033832646
-
Fructose operon mutants of Spiroplasma citri
-
Gaurivaud, P., Laigret, F., Verdin, E., Garnier, M., Bove, J.M., Fructose operon mutants of Spiroplasma citri. Microbiology 146 (2000), 2229-2236.
-
(2000)
Microbiology
, vol.146
, pp. 2229-2236
-
-
Gaurivaud, P.1
Laigret, F.2
Verdin, E.3
Garnier, M.4
Bove, J.M.5
-
28
-
-
24044432264
-
Lysine and glutamate production by Corynebacterium glutamicum on glucose, fructose and sucrose: roles of malic enzyme and fructose-1,6-bisphosphatase
-
Georgi, T., Rittmann, D., Wendisch, V.F., Lysine and glutamate production by Corynebacterium glutamicum on glucose, fructose and sucrose: roles of malic enzyme and fructose-1,6-bisphosphatase. Metab. Eng. 7 (2005), 291-301, 10.1016/j.ymben.2005.05.001.
-
(2005)
Metab. Eng.
, vol.7
, pp. 291-301
-
-
Georgi, T.1
Rittmann, D.2
Wendisch, V.F.3
-
29
-
-
79961072482
-
Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis
-
Hong, K.-K., Vongsangnak, W., Vemuri, G.N., Nielsen, J., Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis. Proc. Natl. Acad. Sci. USA 108 (2011), 12179-12184, 10.1073/pnas.1103219108.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 12179-12184
-
-
Hong, K.-K.1
Vongsangnak, W.2
Vemuri, G.N.3
Nielsen, J.4
-
30
-
-
0037079023
-
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
Ibarra, R.U., Edwards, J.S., Palsson, B.O., Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420 (2002), 186-189, 10.1038/nature01149.
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.U.1
Edwards, J.S.2
Palsson, B.O.3
-
31
-
-
84871077389
-
Sugar transport systems in Corynebacterium glutamicum: features and applications to strain development
-
Ikeda, M., Sugar transport systems in Corynebacterium glutamicum: features and applications to strain development. Appl. Microbiol. Biotechnol. 96 (2012), 1191-1200, 10.1007/s00253-012-4488-z.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.96
, pp. 1191-1200
-
-
Ikeda, M.1
-
32
-
-
34547642714
-
Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation
-
Jakob, K., Satorhelyi, P., Lange, C., Wendisch, V.F., Silakowski, B., Scherer, S., Neuhaus, K., Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation. J. Bacteriol. 189 (2007), 5582-5590, 10.1128/JB.00082-07.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5582-5590
-
-
Jakob, K.1
Satorhelyi, P.2
Lange, C.3
Wendisch, V.F.4
Silakowski, B.5
Scherer, S.6
Neuhaus, K.7
-
33
-
-
0014430390
-
The accumulation of glucose 6-phosphate from glucose and its effect in an Escherichia coli mutant lacking phosphoglucose isomerase and glucose 6-phosphate dehydrogenase
-
Journal, T.H.E., Bioloqical, O.F., The accumulation of glucose 6-phosphate from glucose and its effect in an Escherichia coli mutant lacking phosphoglucose isomerase and glucose 6-phosphate dehydrogenase. J. Biol. Chem. 243 (1968), 6451-6457.
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 6451-6457
-
-
Journal, T.H.E.1
Bioloqical, O.F.2
-
34
-
-
0026744648
-
Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli
-
Kadner, R.J., Murphy, G.P., Stephens, C.M., Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli. J. Gen. Microbiol. 138 (1992), 2007-2014, 10.1099/00221287-138-10-2007.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2007-2014
-
-
Kadner, R.J.1
Murphy, G.P.2
Stephens, C.M.3
-
35
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins
-
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B.J., Gaigalat, L., Goesmann, A., Hartmann, M., Huthmacher, K., Krämer, R., Linke, B., McHardy, A.C., Meyer, F., Möckel, B., Pfefferle, W., Pühler, A., Rey, D. a, Rückert, C., Rupp, O., Sahm, H., Wendisch, V.F., Wiegräbe, I., Tauch, A., The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins. J. Biotechnol. 104 (2003), 5-25, 10.1016/S0168-1656(03)00154-8.
-
(2003)
J. Biotechnol.
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
Bathe, B.2
Bartels, D.3
Bischoff, N.4
Bott, M.5
Burkovski, A.6
Dusch, N.7
Eggeling, L.8
Eikmanns, B.J.9
Gaigalat, L.10
Goesmann, A.11
Hartmann, M.12
Huthmacher, K.13
Krämer, R.14
Linke, B.15
McHardy, A.C.16
Meyer, F.17
Möckel, B.18
Pfefferle, W.19
Pühler, A.20
Rey, D.A.21
Rückert, C.22
Rupp, O.23
Sahm, H.24
Wendisch, V.F.25
Wiegräbe, I.26
Tauch, A.27
more..
-
36
-
-
0036310420
-
Influence of glucose, fructose and sucrose as carbon sources on kinetics and stoichiometry of lysine production by Corynebacterium glutamicum
-
Kiefer, P., Heinzle, E., Wittmann, C., Influence of glucose, fructose and sucrose as carbon sources on kinetics and stoichiometry of lysine production by Corynebacterium glutamicum. J. Ind. Microbiol. Biotechnol. 28 (2002), 338-343, 10.1038/sj/jim/7000252.
-
(2002)
J. Ind. Microbiol. Biotechnol.
, vol.28
, pp. 338-343
-
-
Kiefer, P.1
Heinzle, E.2
Wittmann, C.3
-
37
-
-
0347761177
-
Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose
-
Kiefer, P., Heinzle, E., Zelder, O., Wittmann, C., Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose. Appl. Environ. Microbiol. 70 (2004), 229-239, 10.1128/AEM.70.1.229.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 229-239
-
-
Kiefer, P.1
Heinzle, E.2
Zelder, O.3
Wittmann, C.4
-
38
-
-
58249089508
-
In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network
-
Kjeldsen, K.R., Nielsen, J., In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network. Biotechnol. Bioeng. 102 (2009), 583-597, 10.1002/bit.22067.
-
(2009)
Biotechnol. Bioeng.
, vol.102
, pp. 583-597
-
-
Kjeldsen, K.R.1
Nielsen, J.2
-
39
-
-
84899819618
-
Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell-cell interactions
-
Krašovec, R., Belavkin, R.V., Aston, J. a D., Channon, A., Aston, E., Rash, B.M., Kadirvel, M., Forbes, S., Knight, C.G., Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell-cell interactions. Nat. Commun., 5, 2014, 3742, 10.1038/ncomms4742.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3742
-
-
Krašovec, R.1
Belavkin, R.V.2
Aston, J.A.D.3
Channon, A.4
Aston, E.5
Rash, B.M.6
Kadirvel, M.7
Forbes, S.8
Knight, C.G.9
-
40
-
-
33745616349
-
Analysis of gene expression in operons of Streptomyces coelicolor
-
Laing, E., Mersinias, V., Smith, C.P., Hubbard, S.J., Analysis of gene expression in operons of Streptomyces coelicolor. Genome Biol., 7, 2006, R46, 10.1186/gb-2006-7-6-r46.
-
(2006)
Genome Biol.
, vol.7
, pp. R46
-
-
Laing, E.1
Mersinias, V.2
Smith, C.P.3
Hubbard, S.J.4
-
41
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357-359, 10.1038/nmeth.1923.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
42
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee, H., Popodi, E., Tang, H., Foster, P.L., Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl. Acad. Sci. USA 109 (2012), E2774-E2783, 10.1073/pnas.1210309109.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. E2774-E2783
-
-
Lee, H.1
Popodi, E.2
Tang, H.3
Foster, P.L.4
-
43
-
-
84943604629
-
Systems strategies for developing industrial microbial strains
-
Lee, S.Y., Kim, H.U., Systems strategies for developing industrial microbial strains. Nat. Biotechnol. 33 (2015), 1061-1072, 10.1038/nbt.3365.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1061-1072
-
-
Lee, S.Y.1
Kim, H.U.2
-
44
-
-
84894494466
-
Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase
-
Lee, Y., Villar, M.T., Artigues, A., Beamer, L.J., Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase. J. Biol. Chem. 289 (2014), 4674-4682, 10.1074/jbc.M113.532226.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 4674-4682
-
-
Lee, Y.1
Villar, M.T.2
Artigues, A.3
Beamer, L.J.4
-
45
-
-
68549104404
-
The sequence alignment/map format and SAM tools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., The sequence alignment/map format and SAM tools. Bioinformatics 25 (2009), 2078-2079, 10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
46
-
-
79958283261
-
Phosphotransferase system-independent glucose utilization in Corynebacterium glutamicum by inositol permeases and glucokinases
-
Lindner, S.N., Seibold, G.M., Henrich, A., Krämer, R., Wendisch, V.F., Phosphotransferase system-independent glucose utilization in Corynebacterium glutamicum by inositol permeases and glucokinases. Appl. Environ. Microbiol. 77 (2011), 3571-3581, 10.1128/AEM.02713-10.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3571-3581
-
-
Lindner, S.N.1
Seibold, G.M.2
Henrich, A.3
Krämer, R.4
Wendisch, V.F.5
-
47
-
-
0020480002
-
Sugar transport by the bacterial phosphotransferase system
-
Meadow, N.D., Roseman, S., Sugar transport by the bacterial phosphotransferase system. J. Biol. Chem. 257 (1982), 14526-14537.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 14526-14537
-
-
Meadow, N.D.1
Roseman, S.2
-
48
-
-
84907292694
-
Sampling of intracellular metabolites for stationary and non-stationary (13)C-metabolic flux analysis in Escherichia coli
-
Millard, P., Massou, S., Wittmann, C., Portais, J.-C., Létisse, F., Sampling of intracellular metabolites for stationary and non-stationary (13)C-metabolic flux analysis in Escherichia coli. Anal. Biochem. 465 (2014), 38-49, 10.1016/j.ab.2014.07.026.
-
(2014)
Anal. Biochem.
, vol.465
, pp. 38-49
-
-
Millard, P.1
Massou, S.2
Wittmann, C.3
Portais, J.-C.4
Létisse, F.5
-
49
-
-
33845800810
-
The phosphotransferase system of Corynebacterium glutamicum: features of sugar transport and carbon regulation
-
Moon, M.-W., Park, S.-Y., Choi, S.-K., Lee, J.-K., The phosphotransferase system of Corynebacterium glutamicum: features of sugar transport and carbon regulation. J. Mol. Microbiol. Biotechnol. 12 (2007), 43-50, 10.1159/000096458.
-
(2007)
J. Mol. Microbiol. Biotechnol.
, vol.12
, pp. 43-50
-
-
Moon, M.-W.1
Park, S.-Y.2
Choi, S.-K.3
Lee, J.-K.4
-
50
-
-
79952370254
-
Gene expression profiling of Corynebacterium glutamicum during anaerobic nitrate respiration: induction of the SOS response for cell survival
-
Nishimura, T., Teramoto, H., Inui, M., Yukawa, H., Gene expression profiling of Corynebacterium glutamicum during anaerobic nitrate respiration: induction of the SOS response for cell survival. J. Bacteriol. 193 (2011), 1327-1333, 10.1128/JB.01453-10.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 1327-1333
-
-
Nishimura, T.1
Teramoto, H.2
Inui, M.3
Yukawa, H.4
-
51
-
-
11144261828
-
A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum
-
Ohnishi, J., Katahira, R., Mitsuhashi, S., Kakita, S., Ikeda, M., A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum. FEMS Microbiol. Lett. 242 (2005), 265-274, 10.1016/j.femsle.2004.11.014.
-
(2005)
FEMS Microbiol. Lett.
, vol.242
, pp. 265-274
-
-
Ohnishi, J.1
Katahira, R.2
Mitsuhashi, S.3
Kakita, S.4
Ikeda, M.5
-
52
-
-
84925355412
-
Adaptive laboratory evolution conferred cross-tolerance to thermal and solvent stress to Corynebacterium glutamicum
-
Oide, S., Gunji, W., Moteki, Y., Yamamoto, S., Suda, M., Jojima, T., Yukawa, H., Inui, M., Adaptive laboratory evolution conferred cross-tolerance to thermal and solvent stress to Corynebacterium glutamicum. Appl. Environ. Microbiol. 81 (2015), 2284-2298, 10.1128/AEM.03973-14.
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 2284-2298
-
-
Oide, S.1
Gunji, W.2
Moteki, Y.3
Yamamoto, S.4
Suda, M.5
Jojima, T.6
Yukawa, H.7
Inui, M.8
-
53
-
-
84907362164
-
Metabolic engineering of Corynebacterium glutamicum for L-arginine production
-
Park, S.H., Kim, H.U., Kim, T.Y., Park, J.S., Kim, S.-S., Lee, S.Y., Metabolic engineering of Corynebacterium glutamicum for L-arginine production. Nat. Commun., 5, 2014, 4618, 10.1038/ncomms5618.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4618
-
-
Park, S.H.1
Kim, H.U.2
Kim, T.Y.3
Park, J.S.4
Kim, S.-S.5
Lee, S.Y.6
-
54
-
-
84863998593
-
Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II Fructose-1,6-bisphosphate aldolase
-
Pickl, A., Johnsen, U., Schönheit, P., Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II Fructose-1,6-bisphosphate aldolase. J. Bacteriol. 194 (2012), 3088-3097, 10.1128/JB.00200-12.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 3088-3097
-
-
Pickl, A.1
Johnsen, U.2
Schönheit, P.3
-
55
-
-
9544253891
-
Genome-scale models of microbial cells: evaluating the consequences of constraints
-
Price, N.D., Reed, J.L., Palsson, B.Ø., Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2 (2004), 886-897, 10.1038/nrmicro1023.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.Ø.3
-
56
-
-
79959733486
-
DNA repair in Corynebacterium model
-
Resende, B.C., Rebelato, a B., D'Afonseca, V., Santos, A.R., Stutzman, T., Azevedo, V. a, Santos, L.L., Miyoshi, A., Lopes, D.O., DNA repair in Corynebacterium model. Gene 482 (2011), 1-7, 10.1016/j.gene.2011.03.008.
-
(2011)
Gene
, vol.482
, pp. 1-7
-
-
Resende, B.C.1
Rebelato, A.B.2
D'Afonseca, V.3
Santos, A.R.4
Stutzman, T.5
Azevedo, V.A.6
Santos, L.L.7
Miyoshi, A.8
Lopes, D.O.9
-
57
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox v2.0
-
Schellenberger, J., Que, R., Fleming, R.M.T., Thiele, I., Orth, J.D., Feist, A.M., Zielinski, D.C., Bordbar, A., Lewis, N.E., Rahmanian, S., Kang, J., Hyduke, D.R., Palsson, B.Ø., Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox v2.0. Nat. Protoc. 6 (2011), 1290-1307, 10.1038/nprot.2011.308.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.T.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
Kang, J.11
Hyduke, D.R.12
Palsson, B.Ø.13
-
58
-
-
84883784975
-
Inactivation of the phosphoglucomutase gene pgm in Corynebacterium glutamicum affects cell shape and glycogen metabolism
-
Seibold, G.M., Eikmanns, B.J., Inactivation of the phosphoglucomutase gene pgm in Corynebacterium glutamicum affects cell shape and glycogen metabolism. Biosci. Rep. 33 (2013), 645-654, 10.1042/BSR20130076.
-
(2013)
Biosci. Rep.
, vol.33
, pp. 645-654
-
-
Seibold, G.M.1
Eikmanns, B.J.2
-
59
-
-
18144440112
-
Mutator action by Escherichia coli strains carrying dnaE mutations
-
Sevastopoulos, C.G., Glaser, D. a, Mutator action by Escherichia coli strains carrying dnaE mutations. Proc. Natl. Acad. Sci. USA 74 (1977), 3947-3950, 10.1073/pnas.74.9.3947.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 3947-3950
-
-
Sevastopoulos, C.G.1
Glaser, D.A.2
-
60
-
-
78149443330
-
Engineering of Corynebacterium glutamicum with an NADPH-generating glycolytic pathway for L-lysine production
-
Takeno, S., Murata, R., Kobayashi, R., Mitsuhashi, S., Ikeda, M., Engineering of Corynebacterium glutamicum with an NADPH-generating glycolytic pathway for L-lysine production. Appl. Environ. Microbiol. 76 (2010), 7154-7160, 10.1128/AEM.01464-10.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7154-7160
-
-
Takeno, S.1
Murata, R.2
Kobayashi, R.3
Mitsuhashi, S.4
Ikeda, M.5
-
61
-
-
84886932425
-
Development of fatty acid-producing Corynebacterium glutamicum strains
-
Takeno, S., Takasaki, M., Urabayashi, A., Mimura, A., Muramatsu, T., Mitsuhashi, S., Ikeda, M., Development of fatty acid-producing Corynebacterium glutamicum strains. Appl. Environ. Microbiol. 79 (2013), 6776-6783, 10.1128/AEM.02003-13.
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 6776-6783
-
-
Takeno, S.1
Takasaki, M.2
Urabayashi, A.3
Mimura, A.4
Muramatsu, T.5
Mitsuhashi, S.6
Ikeda, M.7
-
62
-
-
79958718249
-
Transcriptional regulators of multiple genes involved in carbon metabolism in Corynebacterium glutamicum
-
Teramoto, H., Inui, M., Yukawa, H., Transcriptional regulators of multiple genes involved in carbon metabolism in Corynebacterium glutamicum. J. Biotechnol., 2011, 10.1016/j.jbiotec.2011.01.016.
-
(2011)
J. Biotechnol.
-
-
Teramoto, H.1
Inui, M.2
Yukawa, H.3
-
63
-
-
55649090788
-
Expression of the gapA gene encoding glyceraldehyde-3-phosphate dehydrogenase of Corynebacterium glutamicum is regulated by the global regulator SugR
-
Toyoda, K., Teramoto, H., Inui, M., Yukawa, H., Expression of the gapA gene encoding glyceraldehyde-3-phosphate dehydrogenase of Corynebacterium glutamicum is regulated by the global regulator SugR. Appl. Microbiol. Biotechnol. 81 (2008), 291-301, 10.1007/s00253-008-1682-0.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.81
, pp. 291-301
-
-
Toyoda, K.1
Teramoto, H.2
Inui, M.3
Yukawa, H.4
-
64
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-seq
-
Trapnell, C., Pachter, L., Salzberg, S.L., TopHat: discovering splice junctions with RNA-seq. Bioinformatics 25 (2009), 1105-1111, 10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
65
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., Pachter, L., Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and cufflinks. Nat. Protoc. 7 (2012), 562-578, 10.1038/nprot.2012.016.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
66
-
-
84905989698
-
Identification of PTSFru as the major fructose uptake system of Clostridium acetobutylicum
-
Voigt, C., Bahl, H., Fischer, R.J., Identification of PTSFru as the major fructose uptake system of Clostridium acetobutylicum. Appl. Microbiol. Biotechnol. 98 (2014), 7161-7172, 10.1007/s00253-014-5809-1.
-
(2014)
Appl. Microbiol. Biotechnol.
, vol.98
, pp. 7161-7172
-
-
Voigt, C.1
Bahl, H.2
Fischer, R.J.3
-
67
-
-
84920164500
-
Increased expression of pyruvate carboxylase and biotin protein ligase increases lysine production in a biotin prototrophic Corynebacterium glutamicum strain
-
Wang, Z., Moslehi-Jenabian, S., Solem, C., Jensen, P.R., Increased expression of pyruvate carboxylase and biotin protein ligase increases lysine production in a biotin prototrophic Corynebacterium glutamicum strain. Eng. Life Sci. 00 (2014), 1-10, 10.1002/elsc.201400185.
-
(2014)
Eng. Life Sci.
, pp. 1-10
-
-
Wang, Z.1
Moslehi-Jenabian, S.2
Solem, C.3
Jensen, P.R.4
-
68
-
-
84871981698
-
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
-
Wielgoss, S., Barrick, J.E., Tenaillon, O., Wiser, M.J., Dittmar, W.J., Cruveiller, S., Chane-Woon-Ming, B., Médigue, C., Lenski, R.E., Schneidera, D., Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proc. Natl. Acad. Sci. USA 110 (2012), 222-227, 10.5061/dryad.hb3b5.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 222-227
-
-
Wielgoss, S.1
Barrick, J.E.2
Tenaillon, O.3
Wiser, M.J.4
Dittmar, W.J.5
Cruveiller, S.6
Chane-Woon-Ming, B.7
Médigue, C.8
Lenski, R.E.9
Schneidera, D.10
-
69
-
-
10444258178
-
Metabolic fluxes in Corynebacterium glutamicum during lysine production with sucrose as carbon source
-
Wittmann, C., Kiefer, P., Zelder, O., Metabolic fluxes in Corynebacterium glutamicum during lysine production with sucrose as carbon source. Appl. Environ. Microbiol. 70 (2004), 7277-7287, 10.1128/AEM.70.12.7277.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 7277-7287
-
-
Wittmann, C.1
Kiefer, P.2
Zelder, O.3
-
70
-
-
84921329442
-
Phosphorylation in the catalytic cleft stabilizes and attracts domains of a phosphohexomutase
-
Xu, J., Lee, Y., Beamer, L.J., Van Doren, S.R., Phosphorylation in the catalytic cleft stabilizes and attracts domains of a phosphohexomutase. Biophys. J. 108 (2015), 325-337, 10.1016/j.bpj.2014.12.003.
-
(2015)
Biophys. J.
, vol.108
, pp. 325-337
-
-
Xu, J.1
Lee, Y.2
Beamer, L.J.3
Van Doren, S.R.4
|