메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell-cell interactions

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIFAMPICIN; S RIBOSYLHOMOCYSTEINASE; BACTERIAL PROTEIN; LUXS PROTEIN, BACTERIA; LYASE; PRIMER DNA;

EID: 84899819618     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms4742     Document Type: Article
Times cited : (64)

References (50)
  • 1
    • 0001119463 scopus 로고
    • Essays on evolution. I. On the effects of selection on mutation rate
    • Sturtevant, A. H. Essays on evolution. I. On the effects of selection on mutation rate. Q. Rev. Biol. 12, 464-467 (1937).
    • (1937) Q. Rev. Biol. , vol.12 , pp. 464-467
    • Sturtevant, A.H.1
  • 2
    • 84959609205 scopus 로고
    • On the evolutionary adjustment of spontaneous mutation rates
    • Kimura, M. On the evolutionary adjustment of spontaneous mutation rates. Genet. Res. 9, 23-34 (1967).
    • (1967) Genet. Res. , vol.9 , pp. 23-34
    • Kimura, M.1
  • 5
    • 40849138236 scopus 로고    scopus 로고
    • Estimating the per-base-pair mutation rate in the yeast saccharomyces cerevisiae
    • Lang, G. I. & Murray, A. W. Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178, 67-82 (2008).
    • (2008) Genetics , vol.178 , pp. 67-82
    • Lang, G.I.1    Murray, A.W.2
  • 6
    • 80054760378 scopus 로고    scopus 로고
    • Variation in the mutation rate across mammalian genomes
    • Hodgkinson, A. & Eyre-Walker, A. Variation in the mutation rate across mammalian genomes. Nat. Rev. Genet. 12, 756-766 (2011).
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 756-766
    • Hodgkinson, A.1    Eyre-Walker, A.2
  • 7
    • 0030777211 scopus 로고    scopus 로고
    • Highly variable mutation rates in commensal and pathogenic escherichia coli
    • Matic, I. et al. Highly variable mutation rates in commensal and pathogenic Escherichia coli. Science 277, 1833-1834 (1997).
    • (1997) Science , vol.277 , pp. 1833-1834
    • Matic, I.1
  • 8
    • 84874193830 scopus 로고    scopus 로고
    • Evaluating evolutionary models of stress-induced mutagenesis in bacteria
    • MacLean, R. C., Torres-Barcelo, C. & Moxon, R. Evaluating evolutionary models of stress-induced mutagenesis in bacteria. Nat. Rev. Genet. 14, 221-227 (2013).
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 221-227
    • MacLean, R.C.1    Torres-Barcelo, C.2    Moxon, R.3
  • 9
    • 0036842637 scopus 로고    scopus 로고
    • Genetic loads under fitness-dependent mutation rates
    • Agrawal, A. F. Genetic loads under fitness-dependent mutation rates. J. Evol. Biol 15, 1004-1010 (2002).
    • (2002) J. Evol. Biol , vol.15 , pp. 1004-1010
    • Agrawal, A.F.1
  • 10
    • 84863451730 scopus 로고    scopus 로고
    • The evolution of stress-induced hypermutation in asexual populations
    • Ram, Y. & Hadany, L. The evolution of stress-induced hypermutation in asexual populations. Evolution 66, 2315-2328 (2012).
    • (2012) Evolution , vol.66 , pp. 2315-2328
    • Ram, Y.1    Hadany, L.2
  • 13
    • 0037849904 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • Bjedov, I. et al. Stress-induced mutagenesis in bacteria. Science 300, 1404-1409 (2003).
    • (2003) Science , vol.300 , pp. 1404-1409
    • Bjedov, I.1
  • 14
    • 84859950070 scopus 로고    scopus 로고
    • Evidence for elevated mutation rates in lowquality genotypes
    • Sharp, N. P. & Agrawal, A. F. Evidence for elevated mutation rates in lowquality genotypes. Proc. Natl Acad. Sci. USA 109, 6142-6146 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 6142-6146
    • Sharp, N.P.1    Agrawal, A.F.2
  • 15
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • Luria, S. E. & Delbrück, M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28, 491-511 (1943).
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.E.1    Delbrück, M.2
  • 16
    • 67651119869 scopus 로고    scopus 로고
    • Fitness and its role in evolutionary genetics
    • Orr, H. A. Fitness and its role in evolutionary genetics. Nat. Rev. Genet. 10, 531-539 (2009).
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 531-539
    • Orr, H.A.1
  • 17
    • 0026279651 scopus 로고
    • Long-term experimental evolution in escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski, R. E., Rose, M. R., Simpson, S. C. & Tadler, S. C. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 138, 1315-1341 (1991).
    • (1991) Am. Nat. , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 19
    • 77953362042 scopus 로고    scopus 로고
    • Quantitative liquid chromatography-tandem mass spectrometry profiling of activated methyl cycle metabolites involved in luxs-dependent quorum sensing in escherichia coli
    • Halliday, N. M., Hardie, K. R., Williams, P., Winzer, K. & Barrett, D. A. Quantitative liquid chromatography-tandem mass spectrometry profiling of activated methyl cycle metabolites involved in LuxS-dependent quorum sensing in Escherichia coli. Anal. Biochem. 403, 20-29 (2010).
    • (2010) Anal. Biochem. , vol.403 , pp. 20-29
    • Halliday, N.M.1    Hardie, K.R.2    Williams, P.3    Winzer, K.4    Barrett, D.A.5
  • 20
    • 33748649683 scopus 로고    scopus 로고
    • AI-3 synthesis is not dependent on luxS in escherichia coli
    • Walters, M., Sircili, M. P. & Sperandio, V. AI-3 Synthesis is not dependent on luxS in Escherichia coli. J. Bacteriol. 188, 5668-5681 (2006).
    • (2006) J. Bacteriol. , vol.188 , pp. 5668-5681
    • Walters, M.1    Sircili, M.P.2    Sperandio, V.3
  • 21
    • 84876583216 scopus 로고    scopus 로고
    • Natural genome diversity of AI-2 quorum sensing in escherichia coli: Conserved signal production but labile signal reception
    • Brito, P. H., Rocha, E. P. C., Xavier, K. B. & Gordo, I. Natural genome diversity of AI-2 quorum sensing in Escherichia coli: conserved signal production but labile signal reception. Genome Biol. Evol. 5, 16-30 (2013).
    • (2013) Genome Biol. Evol. , vol.5 , pp. 16-30
    • Brito, P.H.1    Rocha, E.P.C.2    Xavier, K.B.3    Gordo, I.4
  • 23
    • 84891750356 scopus 로고    scopus 로고
    • COLOMBOS v2.0: An ever expanding collection of bacterial expression compendia
    • Meysman, P. et al. COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. Nucleic Acids Res. 42, D649-D653 (2014).
    • (2014) Nucleic Acids Res. , vol.42
    • Meysman, P.1
  • 24
    • 84892682954 scopus 로고    scopus 로고
    • (eds Sorokin, A., Murphey, R., Thai, M. T. & Pardalos, P. M.) (Springer Proceedings in Mathematics & Statistics), (Springer)
    • Belavkin, R. V. in Dynamics of Information Systems: Mathematical Foundations Vol. 20 (eds Sorokin, A., Murphey, R., Thai, M. T. & Pardalos, P. M.) (Springer Proceedings in Mathematics & Statistics) 3-21 (Springer, 2012).
    • (2012) Dynamics of Information Systems: Mathematical Foundations , vol.20 , pp. 3-21
    • Belavkin, R.V.1
  • 25
    • 34547770887 scopus 로고    scopus 로고
    • Causes and consequences of DNA repair activity modulation during stationary phase in escherichia coli
    • Saint-Ruf, C., Pesut, J., Sopta, M. & Matic, I. Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli. Crit. Rev. Biochem. Mol. Biol. 42, 259-270 (2007).
    • (2007) Crit. Rev. Biochem. Mol. Biol. , vol.42 , pp. 259-270
    • Saint-Ruf, C.1    Pesut, J.2    Sopta, M.3    Matic, I.4
  • 26
    • 33750735392 scopus 로고    scopus 로고
    • + revertants in salmonella typhimurium populations
    • + revertants in Salmonella typhimurium populations. Mikrobiologiia 75, 521-524 (2006).
    • (2006) Mikrobiologiia , vol.75 , pp. 521-524
    • Babynin, E.V.1
  • 27
    • 3142675034 scopus 로고    scopus 로고
    • Specific growth rate and not cell density controls the general stress response in escherichia coli
    • Ihssen, J. & Egli, T. Specific growth rate and not cell density controls the general stress response in Escherichia coli. Microbiology 150, 1637-1648 (2004).
    • (2004) Microbiology , vol.150 , pp. 1637-1648
    • Ihssen, J.1    Egli, T.2
  • 28
    • 0029992026 scopus 로고    scopus 로고
    • Depletion of the cellular amounts of the muts and muth methyl-directed mismatch repair proteins in stationary-phase escherichia coli K-12 cells
    • Feng, G., Tsui, H. C. & Winkler, M. E. Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells. J. Bacteriol. 178, 2388-2396 (1996).
    • (1996) J. Bacteriol. , vol.178 , pp. 2388-2396
    • Feng, G.1    Tsui, H.C.2    Winkler, M.E.3
  • 29
    • 0018185292 scopus 로고
    • Molecular-basis of base substitution hotspots in escherichia coli
    • Coulondre, C., Miller, J. H., Farabaugh, P. J. & Gilbert, W. Molecular-basis of base substitution hotspots in Escherichia coli. Nature 274, 775-780 (1978).
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1    Miller, J.H.2    Farabaugh, P.J.3    Gilbert, W.4
  • 30
    • 0018800323 scopus 로고
    • Recognition sequence of the dam methylase of escherichia-coli K12 and mode of cleavage of dpn-I endonuclease
    • Geier, G. E. & Modrich, P. Recognition sequence of the Dam methylase of Escherichia-coli K12 and mode of cleavage of Dpn-I endonuclease. J. Biol. Chem. 254, 1408-1413 (1979).
    • (1979) J. Biol. Chem. , vol.254 , pp. 1408-1413
    • Geier, G.E.1    Modrich, P.2
  • 31
    • 84867339877 scopus 로고    scopus 로고
    • Rate and molecular spectrum of spontaneous mutations in the bacterium escherichia coli as determined by whole-genome sequencing
    • Lee, H., Popodi, E., Tang, H. & Foster, P. L. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl Acad. Sci. USA. 109, E2774-E2783 (2012).
    • (2012) Proc. Natl Acad. Sci. USA. , vol.109
    • Lee, H.1    Popodi, E.2    Tang, H.3    Foster, P.L.4
  • 32
    • 1642267937 scopus 로고    scopus 로고
    • Polymerases leave fingerprints: Analysis of the mutational spectrum in escherichia colirpoB to assess the role of polymerase IV in spontaneous mutation
    • Wolff, E., Kim, M., Hu, K. B., Yang, H. J. & Miller, J. H. Polymerases leave fingerprints: Analysis of the mutational spectrum in Escherichia colirpoB to assess the role of polymerase IV in spontaneous mutation. J. Bacteriol. 186, 2900-2905 (2004).
    • (2004) J. Bacteriol. , vol.186 , pp. 2900-2905
    • Wolff, E.1    Kim, M.2    Hu, K.B.3    Yang, H.J.4    Miller, J.H.5
  • 33
    • 0013898719 scopus 로고
    • Methylated bases in host-modified deoxyribonucleic acid of escherichia coli and bacteriophage lambda
    • Gough, M. & Lederberg, S. Methylated bases in host-modified deoxyribonucleic acid of Escherichia coli and bacteriophage lambda. J. Bacteriol. 91, 1460-1468 (1966).
    • (1966) J. Bacteriol. , vol.91 , pp. 1460-1468
    • Gough, M.1    Lederberg, S.2
  • 34
    • 35348824849 scopus 로고    scopus 로고
    • The possible influence of luxs in the in vivo virulence of rabbit enteropathogenic escherichia coli
    • Zhu, C. et al. The possible influence of LuxS in the in vivo virulence of rabbit enteropathogenic Escherichia coli. Vet. Microbiol. 125, 313-322 (2007).
    • (2007) Vet. Microbiol. , vol.125 , pp. 313-322
    • Zhu, C.1
  • 35
    • 34548108138 scopus 로고    scopus 로고
    • Targeting virulence: A new paradigm for antimicrobial therapy
    • Clatworthy, A. E., Pierson, E. & Hung, D. T. Targeting virulence: a new paradigm for antimicrobial therapy. Nat. Chem. Biol. 3, 541-548 (2007).
    • (2007) Nat. Chem. Biol. , vol.3 , pp. 541-548
    • Clatworthy, A.E.1    Pierson, E.2    Hung, D.T.3
  • 36
    • 77952542701 scopus 로고    scopus 로고
    • Multidrug-resistant and extensively drug-resistant tuberculosis: A threat to global control of tuberculosis
    • Gandhi, N. R. et al. Multidrug-resistant and extensively drug-resistant tuberculosis: a threat to global control of tuberculosis. Lancet 375, 1830-1843 (2010).
    • (2010) Lancet , vol.375 , pp. 1830-1843
    • Gandhi, N.R.1
  • 37
    • 11144288181 scopus 로고    scopus 로고
    • Regulation of uptake and processing of the quorum-sensing autoinducer AI-2 in escherichia coli
    • Xavier, K. B. & Bassler, B. L. Regulation of uptake and processing of the quorum-sensing autoinducer AI-2 in Escherichia coli. J. Bacteriol. 187, 238-248 (2005).
    • (2005) J. Bacteriol. , vol.187 , pp. 238-248
    • Xavier, K.B.1    Bassler, B.L.2
  • 38
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in escherichia coli K-12 using PCR products
    • Datsenko, K. A. & Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA 97, 6640-6645 (2000).
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 39
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with escherichia coli
    • Barrick, J. E. et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247 (2009).
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1
  • 40
    • 0034641929 scopus 로고    scopus 로고
    • The population genetics of ecological specialization in evolving escherichia coli populations
    • Cooper, V. S. & Lenski, R. E. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407, 736-739 (2000).
    • (2000) Nature , vol.407 , pp. 736-739
    • Cooper, V.S.1    Lenski, R.E.2
  • 41
    • 0026470403 scopus 로고
    • On fluctuation analysis: A new, simple and efficient method for computing the expected number of mutants
    • Sarkar, S., Ma, W. T. & Sandri, G. vH. On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85, 173-179 (1992).
    • (1992) Genetica , vol.85 , pp. 173-179
    • Sarkar, S.1    Ma, W.T.2    Sandri, G.V.H.3
  • 42
    • 0001633538 scopus 로고
    • Analysis of the luria-delbrück distribution using discrete convolution powers
    • Ma, W. T., Sandri, G. v. H. & Sarkar, S. Analysis of the Luria-Delbrück distribution using discrete convolution powers. J. Appl. Prob. 29, 255-267 (1992).
    • (1992) J. Appl. Prob. , vol.29 , pp. 255-267
    • Ma, W.T.1    Sandri, V.G.H.2    Sarkar, S.3
  • 43
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • Rosche, W. A. & Foster, P. L. Determining mutation rates in bacterial populations. Methods 20, 4-17 (2000).
    • (2000) Methods , vol.20 , pp. 4-17
    • Rosche, W.A.1    Foster, P.L.2
  • 44
    • 33745211644 scopus 로고    scopus 로고
    • Methods for determining spontaneous mutation rates
    • Foster, P. L. Methods for determining spontaneous mutation rates. Methods Enzymol. 409, 195-213 (2006).
    • (2006) Methods Enzymol. , vol.409 , pp. 195-213
    • Foster, P.L.1
  • 45
    • 66349117823 scopus 로고    scopus 로고
    • Fluctuation analysis calculator: A web tool for the determination of mutation rate using luria-delbrück fluctuation analysis
    • Hall, B. M., Ma, C.-X., Liang, P. & Singh, K. K. Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbrück fluctuation analysis. Bioinformatics 25, 1564-1565 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1564-1565
    • Hall, B.M.1    Ma, C.-X.2    Liang, P.3    Singh, K.K.4
  • 46
    • 0027968460 scopus 로고
    • Fluctuation tests: How reliable are the estimates of mutation rates?
    • Stewart, F. M. Fluctuation tests: how reliable are the estimates of mutation rates? Genetics 137, 1139-1146 (1994).
    • (1994) Genetics , vol.137 , pp. 1139-1146
    • Stewart, F.M.1
  • 47
    • 77950063417 scopus 로고    scopus 로고
    • Synthesis and bioluminescence-inducing properties of autoinducer (S)-4,5-dihydroxypentane-2,3-dione and its enantiomer
    • Kadirvel, M. et al. Synthesis and bioluminescence-inducing properties of autoinducer (S)-4,5-dihydroxypentane-2,3-dione and its enantiomer. Bioorg. Med. Chem. Lett. 20, 2625-2628 (2010).
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 2625-2628
    • Kadirvel, M.1
  • 48
    • 0032499746 scopus 로고    scopus 로고
    • Quorum sensing in escherichia coli and salmonella typhimurium
    • Surette, M. G. & Bassler, B. L. Quorum sensing in Escherichia coli and Salmonella typhimurium. Proc. Natl Acad. Sci. USA 95, 7046-7050 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 7046-7050
    • Surette, M.G.1    Bassler, B.L.2
  • 50
    • 0000133998 scopus 로고
    • An analysis of transformations
    • Box, G. E. P. & Cox, D. R. An analysis of transformations. J. R. Stat. Soc. B 26, 211-252 (1964).
    • (1964) J. R. Stat. Soc. B , vol.26 , pp. 211-252
    • Box, G.E.P.1    Cox, D.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.