메뉴 건너뛰기




Volumn 420, Issue 6912, 2002, Pages 186-189

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GLYCEROL; METABOLISM; SUBSTRATES;

EID: 0037079023     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature01149     Document Type: Article
Times cited : (721)

References (22)
  • 1
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F. R. et al. The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474 (1997).
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1
  • 2
    • 0036404867 scopus 로고    scopus 로고
    • The Department of Energy Microbial Cell Project: A 180° paradigm shift for biology
    • Drell, D. The Department of Energy Microbial Cell Project: A 180° paradigm shift for biology. OMICS 6, 3-9 (2002).
    • (2002) OMICS , vol.6 , pp. 3-9
    • Drell, D.1
  • 3
    • 0035281870 scopus 로고    scopus 로고
    • Metabolic modeling of microbial strains in silico
    • Covert, M. W. et al. Metabolic modeling of microbial strains in silico. Trends Biochem. Sci. 26, 179-186 (2001).
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 179-186
    • Covert, M.W.1
  • 4
    • 0343488601 scopus 로고    scopus 로고
    • A reconstruction of the metabolism of Methanococcus jannaschii from sequence data
    • Selkov, E., Maltsev, N., Olsen, G. J., Overbeek, R. & Whitman, W. B. A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. Gene 197, GC11-GC26 (1997).
    • (1997) Gene , vol.197
    • Selkov, E.1    Maltsev, N.2    Olsen, G.J.3    Overbeek, R.4    Whitman, W.B.5
  • 5
    • 0033977576 scopus 로고    scopus 로고
    • WIT: Integrated system for high-throughput genome sequence analysis and metabolic reconstruction
    • Overbeek, R. et al. WIT: Integrated system for high-throughput genome sequence analysis and metabolic reconstruction. Nucleic Acids Res. 28, 123-125 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 123-125
    • Overbeek, R.1
  • 6
    • 0036084127 scopus 로고    scopus 로고
    • The EcoCyc database
    • Karp, P. D. et al. The EcoCyc database. Nucleic Acids Res. 30, 56-58 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 56-58
    • Karp, P.D.1
  • 7
  • 8
    • 0033031386 scopus 로고    scopus 로고
    • E-CELL: Software environment for whole-cell simulation
    • Tomita, M. et al. E-CELL: software environment for whole-cell simulation. Bioinformatics 15, 72-84 (1999).
    • (1999) Bioinformatics , vol.15 , pp. 72-84
    • Tomita, M.1
  • 10
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster, S., Fell, D. A. & Dandekar, T. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nature Biotechnol. 18, 326-332 (2000).
    • (2000) Nature Biotechnol. , vol.18 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 11
    • 0036330798 scopus 로고    scopus 로고
    • Genome-scale metabolic model of Helicobacter pylori 26695
    • Schilling, C. H. et al. Genome-scale metabolic model of Helicobacter pylori 26695. J. Bacteriol. 184, 4382-4593 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 4382-4593
    • Schilling, C.H.1
  • 12
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG 1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    • Edwards, J. S. & Palsson, B. O. The Escherichia coli MG 1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. USA 97, 5528-5533 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 13
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • Varma, A. & Palsson, B. O. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 60, 3724-3731 (1994).
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 14
    • 0035125986 scopus 로고    scopus 로고
    • In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
    • Edwards, J. S., Ibarra, R. U. & Palsson, B. O. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nature Biotechnol. 19, 125-130 (2001).
    • (2001) Nature Biotechnol. , vol.19 , pp. 125-130
    • Edwards, J.S.1    Ibarra, R.U.2    Palsson, B.O.3
  • 15
    • 0033764285 scopus 로고    scopus 로고
    • The challenges of in silico biology
    • Palsson, B. O. The challenges of in silico biology. Nature Biotechnol. 18, 1147-1150 (2000).
    • (2000) Nature Biotechnol. , vol.18 , pp. 1147-1150
    • Palsson, B.O.1
  • 17
    • 0030804853 scopus 로고    scopus 로고
    • Flux analysis of underdetermined metabolic networks: The quest for the missing constraints
    • Bonarius, H. P. J., Schmid, G. & Tramper, J. Flux analysis of underdetermined metabolic networks: The quest for the missing constraints. Trends Biotechnol. 15, 308-314 (1997).
    • (1997) Trends Biotechnol. , vol.15 , pp. 308-314
    • Bonarius, H.P.J.1    Schmid, G.2    Tramper, J.3
  • 18
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific and practical use
    • Varma, A. & Palsson, B. O. Metabolic flux balancing: Basic concepts, scientific and practical use. Bio/Technology 12, 994-998 (1994).
    • (1994) Bio/Technology , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 19
    • 0037075690 scopus 로고    scopus 로고
    • Modeling and simulation: Tools for metabolic engineering
    • Wiechert, V. Modeling and simulation: Tools for metabolic engineering. J. Biotechnol. 94, 37-63 (2002).
    • (2002) J. Biotechnol. , vol.94 , pp. 37-63
    • Wiechert, V.1
  • 20
    • 0034447725 scopus 로고    scopus 로고
    • Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
    • Schilling, C. H., Edwards, J. S., Letscher, D. & Palsson, B. O. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnol. Bioeng. 71, 286-306 (2000).
    • (2000) Biotechnol. Bioeng. , vol.71 , pp. 286-306
    • Schilling, C.H.1    Edwards, J.S.2    Letscher, D.3    Palsson, B.O.4
  • 21
    • 0037021804 scopus 로고    scopus 로고
    • Characterizing the metabolic phenotype: A phenotype phase plane analysis
    • Edwards, J. S., Ramakrishna, R. & Palsson, B. O. Characterizing the metabolic phenotype: A phenotype phase plane analysis. Biotechnol. Bioeng. 77, 27-36 (2002).
    • (2002) Biotechnol. Bioeng. , vol.77 , pp. 27-36
    • Edwards, J.S.1    Ramakrishna, R.2    Palsson, B.O.3
  • 22
    • 0030907550 scopus 로고    scopus 로고
    • Use of a glycerol-limited, long-term chemostat for isolation of Escherichia coli mutants with improved physiological properties
    • Weikert, C., Sauer, U. & Bailey, J. E. Use of a glycerol-limited, long-term chemostat for isolation of Escherichia coli mutants with improved physiological properties. Microbiology 143, 1567-1574 (1997).
    • (1997) Microbiology , vol.143 , pp. 1567-1574
    • Weikert, C.1    Sauer, U.2    Bailey, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.