-
1
-
-
79951501719
-
DNA assembly for synthetic biology: From parts to pathways and beyond
-
Ellis,T., Adie,T. and Baldwin,G.S. (2011) DNA assembly for synthetic biology: from parts to pathways and beyond. Integr. Biol., 3, 109-118.
-
(2011)
Integr. Biol.
, vol.3
, pp. 109-118
-
-
Ellis, T.1
Adie, T.2
Baldwin, G.S.3
-
2
-
-
84886092842
-
Advanced genetic tools for plant biotechnology
-
Liu,W., Yuan,J.S. and Stewart,C.N. Jr (2013) Advanced genetic tools for plant biotechnology. Nat. Rev. Genet., 14, 781-793.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 781-793
-
-
Liu, W.1
Yuan, J.S.2
Stewart, C.N.3
-
3
-
-
45149118469
-
Engineering BioBrick vectors from BioBrick parts
-
Shetty,R.P., Endy,D. and Knight,T.F. Jr (2008) Engineering BioBrick vectors from BioBrick parts. J. Biol. Eng., 2, 5.
-
(2008)
J. Biol. Eng.
, vol.2
, pp. 5
-
-
Shetty, R.P.1
Endy, D.2
Knight, T.F.3
-
4
-
-
77649305316
-
BglBricks: A flexible standard for biological part assembly
-
Anderson,J.C., Dueber,J.E., Leguia,M., Wu,G.C., Goler,J.A., Arkin,A.P. and Keasling,J.D. (2010) BglBricks: a flexible standard for biological part assembly. J. Biol. Eng., 4, 1.
-
(2010)
J. Biol. Eng.
, vol.4
, pp. 1
-
-
Anderson, J.C.1
Dueber, J.E.2
Leguia, M.3
Wu, G.C.4
Goler, J.A.5
Arkin, A.P.6
Keasling, J.D.7
-
5
-
-
56649114274
-
A one pot, one step, precision cloning method with high throughput capability
-
Engler,C., Kandzia,R. and Marillonnet,S. (2008) A one pot, one step, precision cloning method with high throughput capability. PLoS One, 3, e3647.
-
(2008)
PLoS One
, vol.3
, pp. e3647
-
-
Engler, C.1
Kandzia, R.2
Marillonnet, S.3
-
6
-
-
77952517976
-
Fusion BioBrick assembly and re-engineering
-
Sleight,S.C., Bartley,B.A., Lieviant,J.A. and Sauro,H.M. (2010) In-Fusion BioBrick assembly and re-engineering. Nucleic Acids Res., 38, 2624-2636.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2624-2636
-
-
Sleight, S.C.1
Bartley, B.A.2
Lieviant, J.A.3
Sauro, H.M.4
-
7
-
-
33847608289
-
Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
-
Li,M.Z. and Elledge,S.J. (2007) Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat. Methods, 4, 251-256.
-
(2007)
Nat. Methods
, vol.4
, pp. 251-256
-
-
Li, M.Z.1
Elledge, S.J.2
-
8
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson,D.G., Young,L., Chuang,R.Y., Venter,J.C., Hutchison,C.A. 3rd and Smith,H.O. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods, 6, 343-345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
9
-
-
58149510036
-
One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome
-
Gibson,D.G., Benders,G.A., Axelrod,K.C., Zaveri,J., Algire,M.A., Moodie,M., Montague,M.G., Venter,J.C., Smith,H.O. and Hutchison,C.A. 3rd (2008) One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome. Proc. Natl. Acad. Sci. U.S.A., 105, 20404-20409.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 20404-20409
-
-
Gibson, D.G.1
Benders, G.A.2
Axelrod, K.C.3
Zaveri, J.4
Algire, M.A.5
Moodie, M.6
Montague, M.G.7
Venter, J.C.8
Smith, H.O.9
Hutchison, C.A.10
-
10
-
-
59649108349
-
DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
-
Shao,Z., Zhao,H. and Zhao,H. (2009) DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res., 37, e16.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. e16
-
-
Shao, Z.1
Zhao, H.2
Zhao, H.3
-
11
-
-
80053132391
-
Synthetic chromosome arms function in yeast and generate phenotypic diversity by design
-
Dymond,J.S., Richardson,S.M., Coombes,C.E., Babatz,T., Muller,H., Annaluru,N., Blake,W.J., Schwerzmann,J.W., Dai,J., Lindstrom,D.L. et al. (2011) Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature, 477, 471-476.
-
(2011)
Nature
, vol.477
, pp. 471-476
-
-
Dymond, J.S.1
Richardson, S.M.2
Coombes, C.E.3
Babatz, T.4
Muller, H.5
Annaluru, N.6
Blake, W.J.7
Schwerzmann, J.W.8
Dai, J.9
Lindstrom, D.L.10
-
12
-
-
84897581176
-
Total synthesis of a functional designer eukaryotic chromosome
-
Annaluru,N., Muller,H., Mitchell,L.A., Ramalingam,S., Stracquadanio,G., Richardson,S.M., Dymond,J.S., Kuang,Z., Scheifele,L.Z., Cooper,E.M. et al. (2014) Total synthesis of a functional designer eukaryotic chromosome. Science, 344, 55-58.
-
(2014)
Science
, vol.344
, pp. 55-58
-
-
Annaluru, N.1
Muller, H.2
Mitchell, L.A.3
Ramalingam, S.4
Stracquadanio, G.5
Richardson, S.M.6
Dymond, J.S.7
Kuang, Z.8
Scheifele, L.Z.9
Cooper, E.M.10
-
13
-
-
57549109461
-
Toward minimal bacterial cells: Evolution vs.design
-
Moya,A., Gil,R., Latorre,A., Pereto,J., Pilar Garcillan-Barcia,M. and de la Cruz,F. (2009) Toward minimal bacterial cells: evolution vs. design. FEMS microbiology reviews, 33, 225-235.
-
(2009)
FEMS Microbiology Reviews
, vol.33
, pp. 225-235
-
-
Moya, A.1
Gil, R.2
Latorre, A.3
Pereto, J.4
Pilar Garcillan-Barcia, M.5
De La Cruz, F.6
-
14
-
-
77953584054
-
Creation of a bacterial cell controlled by a chemically synthesized genome
-
Gibson,D.G., Glass,J.I., Lartigue,C., Noskov,V.N., Chuang,R.Y., Algire,M.A., Benders,G.A., Montague,M.G., Ma,L., Moodie,M.M. et al. (2010) Creation of a bacterial cell controlled by a chemically synthesized genome. Science, 329, 52-56.
-
(2010)
Science
, vol.329
, pp. 52-56
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
-
15
-
-
84876575031
-
Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
-
DiCarlo,J.E., Norville,J.E., Mali,P., Rios,X., Aach,J. and Church,G.M. (2013) Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems. Nucleic Acids Res., 41, 4336-4343.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4336-4343
-
-
DiCarlo, J.E.1
Norville, J.E.2
Mali, P.3
Rios, X.4
Aach, J.5
Church, G.M.6
-
16
-
-
84874608929
-
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
-
Jiang,W., Bikard,D., Cox,D., Zhang,F. and Marraffini,L.A. (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol., 31, 233-239.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 233-239
-
-
Jiang, W.1
Bikard, D.2
Cox, D.3
Zhang, F.4
Marraffini, L.A.5
-
17
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali,P., Yang,L., Esvelt,K.M., Aach,J., Guell,M., DiCarlo,J.E., Norville,J.E. and Church,G.M. (2013) RNA-guided human genome engineering via Cas9. Science, 339, 823-826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
18
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi,L.S., Larson,M.H., Gilbert,L.A., Doudna,J.A., Weissman,J.S., Arkin,A.P. and Lim,W.A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
19
-
-
84884288934
-
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
-
Ran,F.A., Hsu,P.D., Lin,C.Y., Gootenberg,J.S., Konermann,S., Trevino,A.E., Scott,D.A., Inoue,A., Matoba,S., Zhang,Y. et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell, 154, 1380-1389.
-
(2013)
Cell
, vol.154
, pp. 1380-1389
-
-
Ran, F.A.1
Hsu, P.D.2
Lin, C.Y.3
Gootenberg, J.S.4
Konermann, S.5
Trevino, A.E.6
Scott, D.A.7
Inoue, A.8
Matoba, S.9
Zhang, Y.10
-
20
-
-
84877707375
-
One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
-
Wang,H., Yang,H., Shivalila,C.S., Dawlaty,M.M., Cheng,A.W., Zhang,F. and Jaenisch,R. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell, 153, 910-918.
-
(2013)
Cell
, vol.153
, pp. 910-918
-
-
Wang, H.1
Yang, H.2
Shivalila, C.S.3
Dawlaty, M.M.4
Cheng, A.W.5
Zhang, F.6
Jaenisch, R.7
-
21
-
-
84933569948
-
CasEMBLR: Cas9-facilitated multiloci genomic integration of in vivo assembled DNA parts in Saccharomyces cerevisiae
-
Jakociunas,T., Rajkumar,A.S., Zhang,J., Arsovska,D., Rodriguez,A., Jendresen,C.B., Skjodt,M.L., Nielsen,A.T., Borodina,I., Jensen,M.K. et al. (2015) CasEMBLR: Cas9-facilitated multiloci genomic integration of in vivo assembled DNA parts in Saccharomyces cerevisiae. ACS Synth. Biol., 4, 1226-1234.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 1226-1234
-
-
Jakociunas, T.1
Rajkumar, A.S.2
Zhang, J.3
Arsovska, D.4
Rodriguez, A.5
Jendresen, C.B.6
Skjodt, M.L.7
Nielsen, A.T.8
Borodina, I.9
Jensen, M.K.10
-
22
-
-
0030844526
-
Direct isolation of human BRCA2 gene by transformation-associated recombination in yeast
-
Larionov,V., Kouprina,N., Solomon,G., Barrett,J.C. and Resnick,M.A. (1997) Direct isolation of human BRCA2 gene by transformation-associated recombination in yeast. Proc. Natl. Acad. Sci. U.S.A., 94, 7384-7387.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A
, vol.94
, pp. 7384-7387
-
-
Larionov, V.1
Kouprina, N.2
Solomon, G.3
Barrett, J.C.4
Resnick, M.A.5
-
23
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
-
Goldstein,A.L. and McCusker,J.H. (1999) Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast, 15, 1541-1553.
-
(1999)
Yeast
, vol.15
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
24
-
-
0042329503
-
Distinct replication requirements for the two Vibrio cholerae chromosomes
-
Egan,E.S. and Waldor,M.K. (2003) Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell, 114, 521-530.
-
(2003)
Cell
, vol.114
, pp. 521-530
-
-
Egan, E.S.1
Waldor, M.K.2
-
25
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg,J.F., Eisen,J.A., Nelson,W.C., Clayton,R.A., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Umayam,L. et al. (2000) DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature, 406, 477-483.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
-
26
-
-
33646722147
-
Emergent properties of reduced-genome Escherichia coli
-
Posfai,G., Plunkett,G. 3rd, Feher,T., Frisch,D., Keil,G.M., Umenhoffer,K., Kolisnychenko,V., Stahl,B., Sharma,S.S., de Arruda,M. et al. (2006) Emergent properties of reduced-genome Escherichia coli. Science, 312, 1044-1046.
-
(2006)
Science
, vol.312
, pp. 1044-1046
-
-
Posfai, G.1
Plunkett, F.G.T.2
Frisch, D.3
Keil, G.M.4
Umenhoffer, K.5
Kolisnychenko, V.6
Stahl, B.7
Sharma, S.S.8
De Arruda, M.9
-
27
-
-
84934912204
-
MEGA (Multiple Essential Genes Assembling) deletion and replacement method for genome reduction in Escherichia coli
-
Xue,X., Wang,T., Jiang,P., Shao,Y., Zhou,M., Zhong,L., Wu,R., Zhou,J., Xia,H., Zhao,G. et al. (2015) MEGA (Multiple Essential Genes Assembling) deletion and replacement method for genome reduction in Escherichia coli. ACS Synth. Biol., 4, 700-706.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 700-706
-
-
Xue, X.1
Wang, T.2
Jiang, P.3
Shao, Y.4
Zhou, M.5
Zhong, L.6
Wu, R.7
Zhou, J.8
Xia, H.9
Zhao, G.10
-
28
-
-
34347206860
-
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
Gietz,R.D. and Schiestl,R.H. (2007) High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc., 2, 31-34.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 31-34
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
29
-
-
0029691784
-
Protoplast fusion in Saccharomyces cerevisiae
-
Curran,B.P. and Bugeja,V.C. (1996) Protoplast fusion in Saccharomyces cerevisiae. Methods Mol. Biol., 53, 45-49.
-
(1996)
Methods Mol. Biol.
, vol.53
, pp. 45-49
-
-
Curran, B.P.1
Bugeja, V.C.2
-
30
-
-
40649092126
-
Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae
-
Kouprina,N. and Larionov,V. (2008) Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae. Nat. Protoc., 3, 371-377.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 371-377
-
-
Kouprina, N.1
Larionov, V.2
-
31
-
-
84868238000
-
Assembly of large, high G+C bacterial DNA fragments in yeast
-
Noskov,V.N., Karas,B.J., Young,L., Chuang,R.Y., Gibson,D.G., Lin,Y.C., Stam,J., Yonemoto,I.T., Suzuki,Y., Andrews-Pfannkoch,C. et al. (2012) Assembly of large, high G+C bacterial DNA fragments in yeast. ACS Synth. Biol., 1, 267-273.
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 267-273
-
-
Noskov, V.N.1
Karas, B.J.2
Young, L.3
Chuang, R.Y.4
Gibson, D.G.5
Lin, Y.C.6
Stam, J.7
Yonemoto, I.T.8
Suzuki, Y.9
Andrews-Pfannkoch, C.10
-
32
-
-
4544371669
-
Determination of the core of a minimal bacterial gene set
-
Gil,R., Silva,F.J., Pereto,J. and Moya,A. (2004) Determination of the core of a minimal bacterial gene set. Microbiol. Mol. Biol. Rev.: MMBR, 68, 518-537.
-
(2004)
Microbiol. Mol. Biol. Rev.: MMBR
, vol.68
, pp. 518-537
-
-
Gil, R.1
Silva, F.J.2
Pereto, J.3
Moya, A.4
-
33
-
-
19944431737
-
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome
-
Hashimoto,M., Ichimura,T., Mizoguchi,H., Tanaka,K., Fujimitsu,K., Keyamura,K., Ote,T., Yamakawa,T., Yamazaki,Y., Mori,H. et al. (2005) Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome. Mol. Microbiol., 55, 137-149.
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 137-149
-
-
Hashimoto, M.1
Ichimura, T.2
Mizoguchi, H.3
Tanaka, K.4
Fujimitsu, K.5
Keyamura, K.6
Ote, T.7
Yamakawa, T.8
Yamazaki, Y.9
Mori, H.10
-
34
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba,T., Ara,T., Hasegawa,M., Takai,Y., Okumura,Y., Baba,M., Datsenko,K.A., Tomita,M., Wanner,B.L. and Mori,H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol., 2, 2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 0008-2006
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
35
-
-
33846108255
-
Towards synthesis of a minimal cell
-
Forster,A.C. and Church,G.M. (2006) Towards synthesis of a minimal cell. Mol. Syst. Biol., 2, 45.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 45
-
-
Forster, A.C.1
Church, G.M.2
-
36
-
-
84876556918
-
EcoCyc: Fusing model organism databases with systems biology
-
Keseler,I.M., Mackie,A., Peralta-Gil,M., Santos-Zavaleta,A., Gama-Castro,S., Bonavides-Martinez,C., Fulcher,C., Huerta,A.M., Kothari,A., Krummenacker,M. et al. (2013) EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res., 41, D605-D612.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D605-D612
-
-
Keseler, I.M.1
Mackie, A.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Gama-Castro, S.5
Bonavides-Martinez, C.6
Fulcher, C.7
Huerta, A.M.8
Kothari, A.9
Krummenacker, M.10
-
37
-
-
0029074188
-
Transformation of Escherichia coli with large DNA molecules by electroporation
-
Sheng,Y., Mancino,V. and Birren,B. (1995) Transformation of Escherichia coli with large DNA molecules by electroporation. Nucleic Acids Res., 23, 1990-1996.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 1990-1996
-
-
Sheng, Y.1
Mancino, V.2
Birren, B.3
-
38
-
-
0017172644
-
Protoplast formation in Escherichia coli
-
Weiss,R.L. (1976) Protoplast formation in Escherichia coli. J. Bacteriol., 128, 668-670.
-
(1976)
J. Bacteriol.
, vol.128
, pp. 668-670
-
-
Weiss, R.L.1
|