메뉴 건너뛰기




Volumn 4, Issue 6, 2015, Pages 700-706

MEGA (Multiple Essential Genes Assembling) Deletion and Replacement Method for Genome Reduction in Escherichia coli

Author keywords

essential gene; gene assembly; genome engineering; genome reduction

Indexed keywords

DNA FRAGMENT; ENDONUCLEASE; GENOMIC DNA;

EID: 84934912204     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb500324p     Document Type: Article
Times cited : (14)

References (33)
  • 2
    • 77957345108 scopus 로고    scopus 로고
    • Update on designing and building minimal cells
    • Jewett, M. C. and Forster, A. C. (2010) Update on designing and building minimal cells Curr. Opin. Biotechnol. 21, 697-703
    • (2010) Curr. Opin. Biotechnol. , vol.21 , pp. 697-703
    • Jewett, M.C.1    Forster, A.C.2
  • 4
    • 56049102602 scopus 로고    scopus 로고
    • Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome
    • Mizoguchi, H., Sawano, Y., Kato, J., and Mori, H. (2008) Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome DNA Res. 15, 277-284
    • (2008) DNA Res. , vol.15 , pp. 277-284
    • Mizoguchi, H.1    Sawano, Y.2    Kato, J.3    Mori, H.4
  • 6
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A. and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl. Acad. Sci. U.S.A. 97, 6640-6645
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 7
    • 0036953835 scopus 로고    scopus 로고
    • Genetic engineering using homologous recombination
    • Court, D. L., Sawitzke, J. A., and Thomason, L. C. (2002) Genetic engineering using homologous recombination Annu. Rev. Genet. 36, 361-388
    • (2002) Annu. Rev. Genet. , vol.36 , pp. 361-388
    • Court, D.L.1    Sawitzke, J.A.2    Thomason, L.C.3
  • 8
    • 49249139249 scopus 로고    scopus 로고
    • Rapid and efficient construction of markerless deletions in the Escherichia coli genome
    • Yu, B. J., Kang, K. H., Lee, J. H., Sung, B. H., Kim, M. S., and Kim, S. C. (2008) Rapid and efficient construction of markerless deletions in the Escherichia coli genome Nucleic. Acids. Res. 36, e84
    • (2008) Nucleic. Acids. Res. , vol.36 , pp. 84
    • Yu, B.J.1    Kang, K.H.2    Lee, J.H.3    Sung, B.H.4    Kim, M.S.5    Kim, S.C.6
  • 9
    • 0345504146 scopus 로고    scopus 로고
    • Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome
    • Posfai, G., Kolisnychenko, V., Bereczki, Z., and Blattner, F. R. (1999) Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome Nucleic Acids Res. 27, 4409-4415
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4409-4415
    • Posfai, G.1    Kolisnychenko, V.2    Bereczki, Z.3    Blattner, F.R.4
  • 10
    • 0036787648 scopus 로고    scopus 로고
    • Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system
    • Yu, B. J., Sung, B. H., Koob, M. D., Lee, C. H., Lee, J. H., Lee, W. S., Kim, M. S., and Kim, S. C. (2002) Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system Nat. Biotechnol. 20, 1018-1023
    • (2002) Nat. Biotechnol. , vol.20 , pp. 1018-1023
    • Yu, B.J.1    Sung, B.H.2    Koob, M.D.3    Lee, C.H.4    Lee, J.H.5    Lee, W.S.6    Kim, M.S.7    Kim, S.C.8
  • 11
    • 0034571148 scopus 로고    scopus 로고
    • How many genes can make a cell: The minimal-gene-set concept
    • Koonin, E. V. (2000) How many genes can make a cell: The minimal-gene-set concept Annu. Rev. Genomics Hum. Genet. 1, 99-116
    • (2000) Annu. Rev. Genomics Hum. Genet. , vol.1 , pp. 99-116
    • Koonin, E.V.1
  • 13
    • 0029064598 scopus 로고
    • MurA (MurZ), the enzyme that catalyzes the first committed step in peptidoglycan biosynthesis, is essential in Escherichia coli
    • Brown, E. D., Vivas, E. I., Walsh, C. T., and Kolter, R. (1995) MurA (MurZ), the enzyme that catalyzes the first committed step in peptidoglycan biosynthesis, is essential in Escherichia coli J. Bacteriol. 177, 4194-4197
    • (1995) J. Bacteriol. , vol.177 , pp. 4194-4197
    • Brown, E.D.1    Vivas, E.I.2    Walsh, C.T.3    Kolter, R.4
  • 14
    • 0028121106 scopus 로고
    • Translation initiation factor IF1 is essential for cell viability in Escherichia coli
    • Cummings, H. S. and Hershey, J. W. (1994) Translation initiation factor IF1 is essential for cell viability in Escherichia coli J. Bacteriol. 176, 198-205
    • (1994) J. Bacteriol. , vol.176 , pp. 198-205
    • Cummings, H.S.1    Hershey, J.W.2
  • 15
    • 0028314657 scopus 로고
    • Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth
    • Janosi, L., Shimizu, I., and Kaji, A. (1994) Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth Proc. Natl. Acad. Sci. U.S.A. 91, 4249-4253
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 4249-4253
    • Janosi, L.1    Shimizu, I.2    Kaji, A.3
  • 17
    • 34547913808 scopus 로고    scopus 로고
    • Construction of consecutive deletions of the Escherichia coli chromosome
    • Kato, J. and Hashimoto, M. (2007) Construction of consecutive deletions of the Escherichia coli chromosome Mol. Syst. Biol. 3, 132
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 132
    • Kato, J.1    Hashimoto, M.2
  • 18
    • 4544371669 scopus 로고    scopus 로고
    • Determination of the core of a minimal bacterial gene set
    • table of contents
    • Gil, R., Silva, F. J., Pereto, J., and Moya, A. (2004) Determination of the core of a minimal bacterial gene set Microbiol. Mol. Biol. Rev. 68, 518-537 table of contents
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 518-537
    • Gil, R.1    Silva, F.J.2    Pereto, J.3    Moya, A.4
  • 19
    • 33846108255 scopus 로고    scopus 로고
    • Towards synthesis of a minimal cell
    • Forster, A. C. and Church, G. M. (2006) Towards synthesis of a minimal cell Mol. Syst. Biol. 2, 45
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 45
    • Forster, A.C.1    Church, G.M.2
  • 22
    • 59649108349 scopus 로고    scopus 로고
    • DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
    • Shao, Z., Zhao, H., and Zhao, H. (2009) DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways Nucleic Acids Res. 37, e16
    • (2009) Nucleic Acids Res. , vol.37 , pp. 16
    • Shao, Z.1    Zhao, H.2    Zhao, H.3
  • 25
    • 34347206860 scopus 로고    scopus 로고
    • High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
    • Gietz, R. D. and Schiestl, R. H. (2007) High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method Nat. Protoc. 2, 31-34
    • (2007) Nat. Protoc. , vol.2 , pp. 31-34
    • Gietz, R.D.1    Schiestl, R.H.2
  • 26
    • 84902147306 scopus 로고    scopus 로고
    • High-efficiency scarless genetic modification in Escherichia coli by using lambda red recombination and I-SceI cleavage
    • Yang, J., Sun, B., Huang, H., Jiang, Y., Diao, L., Chen, B., Xu, C., Wang, X., Liu, J., Jiang, W., and Yang, S. (2014) High-efficiency scarless genetic modification in Escherichia coli by using lambda red recombination and I-SceI cleavage Appl. Environ. Microbiol. 80, 3826-3834
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 3826-3834
    • Yang, J.1    Sun, B.2    Huang, H.3    Jiang, Y.4    Diao, L.5    Chen, B.6    Xu, C.7    Wang, X.8    Liu, J.9    Jiang, W.10    Yang, S.11
  • 27
    • 79960645969 scopus 로고    scopus 로고
    • Oxidative stress sensitivity of engineered Escherichia coli cells with a reduced genome
    • Iwadate, Y., Honda, H., Sato, H., Hashimoto, M., and Kato, J. (2011) Oxidative stress sensitivity of engineered Escherichia coli cells with a reduced genome FEMS Microbiol. Lett. 322, 25-33
    • (2011) FEMS Microbiol. Lett. , vol.322 , pp. 25-33
    • Iwadate, Y.1    Honda, H.2    Sato, H.3    Hashimoto, M.4    Kato, J.5
  • 28
    • 84922789496 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis of bacterial chromosomes
    • Mawer, J. S. and Leach, D. R. (2013) Pulsed-field gel electrophoresis of bacterial chromosomes Methods Mol. Biol. 1054, 187-194
    • (2013) Methods Mol. Biol. , vol.1054 , pp. 187-194
    • Mawer, J.S.1    Leach, D.R.2
  • 29
    • 37749029027 scopus 로고    scopus 로고
    • Chromosome structuring limits genome plasticity in Escherichia coli
    • Esnault, E., Valens, M., Espeli, O., and Boccard, F. (2007) Chromosome structuring limits genome plasticity in Escherichia coli PLoS Genet. 3, e226
    • (2007) PLoS Genet. , vol.3 , pp. 226
    • Esnault, E.1    Valens, M.2    Espeli, O.3    Boccard, F.4
  • 30
    • 19944422768 scopus 로고    scopus 로고
    • Divided genomes: Negotiating the cell cycle in prokaryotes with multiple chromosomes
    • Egan, E. S., Fogel, M. A., and Waldor, M. K. (2005) Divided genomes: Negotiating the cell cycle in prokaryotes with multiple chromosomes Mol. Microbiol. 56, 1129-1138
    • (2005) Mol. Microbiol. , vol.56 , pp. 1129-1138
    • Egan, E.S.1    Fogel, M.A.2    Waldor, M.K.3
  • 31
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
    • Brachmann, C. B., Davies, A., Cost, G. J., Caputo, E., Li, J., Hieter, P., and Boeke, J. D. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications Yeast 14, 115-132
    • (1998) Yeast , vol.14 , pp. 115-132
    • Brachmann, C.B.1    Davies, A.2    Cost, G.J.3    Caputo, E.4    Li, J.5    Hieter, P.6    Boeke, J.D.7
  • 32
    • 0034680759 scopus 로고    scopus 로고
    • A novel strategy for constructing N-terminal chromosomal fusions to green fluorescent protein in the yeast Saccharomyces cerevisiae
    • Prein, B., Natter, K., and Kohlwein, S. D. (2000) A novel strategy for constructing N-terminal chromosomal fusions to green fluorescent protein in the yeast Saccharomyces cerevisiae FEBS Lett. 485, 29-34
    • (2000) FEBS Lett. , vol.485 , pp. 29-34
    • Prein, B.1    Natter, K.2    Kohlwein, S.D.3
  • 33
    • 84864138531 scopus 로고    scopus 로고
    • Sequential deletion of all the polyketide synthase and nonribosomal peptide synthetase biosynthetic gene clusters and a 900-kb subtelomeric sequence of the linear chromosome of Streptomyces coelicolor
    • Zhou, M., Jing, X., Xie, P., Chen, W., Wang, T., Xia, H., and Qin, Z. (2012) Sequential deletion of all the polyketide synthase and nonribosomal peptide synthetase biosynthetic gene clusters and a 900-kb subtelomeric sequence of the linear chromosome of Streptomyces coelicolor FEMS Microbiol. Lett. 333, 169-179
    • (2012) FEMS Microbiol. Lett. , vol.333 , pp. 169-179
    • Zhou, M.1    Jing, X.2    Xie, P.3    Chen, W.4    Wang, T.5    Xia, H.6    Qin, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.