-
1
-
-
0035843170
-
Industrial biocatalysis today and tomorrow
-
Schmid, A. et al. Industrial biocatalysis today and tomorrow. Nature 409, 258-268 (2001).
-
(2001)
Nature
, vol.409
, pp. 258-268
-
-
Schmid, A.1
-
2
-
-
77949860707
-
Designing artificial enzymes by intuition and computation
-
Nanda, V. & Koder, R. L. Designing artificial enzymes by intuition and computation. Nature Chem. 2, 15-24 (2010).
-
(2010)
Nature Chem.
, vol.2
, pp. 15-24
-
-
Nanda, V.1
Koder, R.L.2
-
3
-
-
84878935468
-
Design of protein catalysts
-
Hilvert, D. Design of protein catalysts. Annu. Rev. Biochem. 82, 447-470 (2013).
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 447-470
-
-
Hilvert, D.1
-
4
-
-
84934964499
-
De novo protein design: How do we expand into the universe of possible protein structures? Curr
-
Woolfson, D. N. et al. De novo protein design: how do we expand into the universe of possible protein structures? Curr. Opin. Struct. Biol. 33, 16-26 (2015).
-
(2015)
Opin. Struct. Biol.
, vol.33
, pp. 16-26
-
-
Woolfson, D.N.1
-
5
-
-
84878025107
-
Computational enzyme design
-
Kiss, G., Çelebi-ÖlÇüm, N., Moretti, R., Baker, D. & Houk, K. Computational enzyme design. Angew. Chem. Int. Ed. 52, 5700-5725 (2013).
-
(2013)
Angew. Chem. Int. Ed.
, vol.52
, pp. 5700-5725
-
-
Kiss, G.1
Çelebi-ÖlÇüm, N.2
Moretti, R.3
Baker, D.4
Houk, K.5
-
6
-
-
77957316716
-
An exciting but challenging road ahead for computational enzyme design
-
Baker, D. An exciting but challenging road ahead for computational enzyme design. Protein Sci. 19, 1817-1819 (2010).
-
(2010)
Protein Sci.
, vol.19
, pp. 1817-1819
-
-
Baker, D.1
-
7
-
-
79956088540
-
De novo enzyme design using Rosetta3
-
Richter, F., Leaver-Fay, A., Khare, S. D., Bjelic, S. & Baker, D. De novo enzyme design using Rosetta3. PLoS ONE 6, e19230 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e19230
-
-
Richter, F.1
Leaver-Fay, A.2
Khare, S.D.3
Bjelic, S.4
Baker, D.5
-
8
-
-
84899486781
-
Design of activated serine-containing catalytic triads with atomic-level accuracy
-
Rajagopalan, S. et al. Design of activated serine-containing catalytic triads with atomic-level accuracy. Nature Chem. Biol. 10, 386-391 (2014).
-
(2014)
Nature Chem. Biol.
, vol.10
, pp. 386-391
-
-
Rajagopalan, S.1
-
9
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger, D. et al. Kemp elimination catalysts by computational enzyme design. Nature 453, 190-195 (2008).
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Rothlisberger, D.1
-
10
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang, L. et al. De novo computational design of retro-aldol enzymes. Science 319, 1387-1391 (2008).
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
-
11
-
-
77954811495
-
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
-
Siegel, J. B. et al. Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science 329, 309-313 (2010).
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.B.1
-
12
-
-
68049106179
-
Directed evolution drives the next generation of biocatalysts
-
Turner, N. J. Directed evolution drives the next generation of biocatalysts. Nature Chem. Biol. 5, 567-573 (2009).
-
(2009)
Nature Chem. Biol.
, vol.5
, pp. 567-573
-
-
Turner, N.J.1
-
13
-
-
84888034901
-
Precision is essential for efficient catalysis in an evolved Kemp eliminase
-
Blomberg, R. et al. Precision is essential for efficient catalysis in an evolved Kemp eliminase. Nature 503, 418-421 (2013).
-
(2013)
Nature
, vol.503
, pp. 418-421
-
-
Blomberg, R.1
-
14
-
-
84876720680
-
De novo enzymes by computational design
-
Kries, H., Blomberg, R. & Hilvert, D. De novo enzymes by computational design. Curr. Opin. Chem. Biol. 17, 221-228 (2013).
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 221-228
-
-
Kries, H.1
Blomberg, R.2
Hilvert, D.3
-
15
-
-
84880920662
-
Evolution of a designed retro-aldolase leads to complete active site remodeling
-
Giger, L. et al. Evolution of a designed retro-aldolase leads to complete active site remodeling. Nature Chem. Biol. 9, 494-498 (2013).
-
(2013)
Nature Chem. Biol.
, vol.9
, pp. 494-498
-
-
Giger, L.1
-
16
-
-
84901855811
-
Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase
-
Preiswerk, N. et al. Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase. Proc. Natl Acad. Sci. USA 111, 8013-8018 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 8013-8018
-
-
Preiswerk, N.1
-
17
-
-
0035807809
-
Enzyme-like proteins by computational design
-
Bolon, D. N. & Mayo, S. L. Enzyme-like proteins by computational design. Proc. Natl Acad. Sci. USA 98, 14274-14279 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 14274-14279
-
-
Bolon, D.N.1
Mayo, S.L.2
-
18
-
-
84948701202
-
New tricks for old proteins: Single mutations in a nonenzymatic protein give rise to various enzymatic activities
-
Moroz, Y. S. et al. New tricks for old proteins: single mutations in a nonenzymatic protein give rise to various enzymatic activities. J. Am. Chem. Soc. 137, 14905-14911 (2015).
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 14905-14911
-
-
Moroz, Y.S.1
-
19
-
-
84867053249
-
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis
-
Richter, F. et al. Computational design of catalytic dyads and oxyanion holes for ester hydrolysis. J. Am. Chem. Soc. 134, 16197-16206 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 16197-16206
-
-
Richter, F.1
-
20
-
-
4143131151
-
De novo design of catalytic proteins
-
Kaplan, J. & DeGrado, W. F. De novo design of catalytic proteins. Proc. Natl Acad. Sci. USA 101, 11566-11570 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 11566-11570
-
-
Kaplan, J.1
DeGrado, W.F.2
-
21
-
-
84881547957
-
Designing functional metalloproteins: From structural to catalytic metal sites
-
Zastrow, M. L. & Pecoraro, V. L. Designing functional metalloproteins: from structural to catalytic metal sites. Coord. Chem. Rev. 257, 2565-2588 (2013).
-
(2013)
Coord. Chem. Rev.
, vol.257
, pp. 2565-2588
-
-
Zastrow, M.L.1
Pecoraro, V.L.2
-
22
-
-
84873629961
-
Constructing man-made enzymes for oxygen activation
-
Armstrong, C. T., Watkins, D. W. & Anderson, J. L. R. Constructing man-made enzymes for oxygen activation. J. Chem. Soc. Dalton Trans. 42, 3136-3150 (2013).
-
(2013)
J. Chem. Soc. Dalton Trans.
, vol.42
, pp. 3136-3150
-
-
Armstrong, C.T.1
Watkins, D.W.2
Anderson, J.L.R.3
-
23
-
-
0031587461
-
Catalysis of hydrolysis and transesterification reactions of p-nitrophenyl esters by a designed helix?loop? Helix dimer
-
Broo, K. S., Brive, L., Ahlberg, P. & Baltzer, L. Catalysis of hydrolysis and transesterification reactions of p-nitrophenyl esters by a designed helix?loop? helix dimer. J. Am. Chem. Soc. 119, 11362-11372 (1997).
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 11362-11372
-
-
Broo, K.S.1
Brive, L.2
Ahlberg, P.3
Baltzer, L.4
-
24
-
-
0034674345
-
Reactive-site design in folded-polypeptide catalysts-the leaving group pKa of reactive esters sets the stage for cooperativity in nucleophilic and general-acid catalysis
-
Nilsson, J. & Baltzer, L. Reactive-site design in folded-polypeptide catalysts-the leaving group pKa of reactive esters sets the stage for cooperativity in nucleophilic and general-acid catalysis. Chem. Eur. J. 6, 2214-2220 (2000).
-
(2000)
Chem. Eur. J.
, vol.6
, pp. 2214-2220
-
-
Nilsson, J.1
Baltzer, L.2
-
25
-
-
84896925534
-
Short peptides self-assemble to produce catalytic amyloids
-
Rufo, C. M. et al. Short peptides self-assemble to produce catalytic amyloids. Nature Chem. 6, 303-309 (2014).
-
(2014)
Nature Chem.
, vol.6
, pp. 303-309
-
-
Rufo, C.M.1
-
26
-
-
84856397386
-
Hydrolytic catalysis and structural stabilization in a designed metalloprotein
-
Zastrow, M. L., Peacock, A. F. A., Stuckey, J. A. & Pecoraro, V. L. Hydrolytic catalysis and structural stabilization in a designed metalloprotein. Nature Chem. 4, 118-123 (2012).
-
(2012)
Nature Chem.
, vol.4
, pp. 118-123
-
-
Zastrow, M.L.1
Peacock, A.F.A.2
Stuckey, J.A.3
Pecoraro, V.L.4
-
27
-
-
84860773275
-
Catalysis by a de novo zinc-mediated protein interface: Implications for natural enzyme evolution and rational enzyme engineering
-
Der, B. S., Edwards, D. R. & Kuhlman, B. Catalysis by a de novo zinc-mediated protein interface: implications for natural enzyme evolution and rational enzyme engineering. Biochemistry 51, 3933-3940 (2012).
-
(2012)
Biochemistry
, vol.51
, pp. 3933-3940
-
-
Der, B.S.1
Edwards, D.R.2
Kuhlman, B.3
-
28
-
-
84919425588
-
A designed supramolecular protein assembly with in vivo enzymatic activity
-
Song, W. J. & Tezcan, F. A. A designed supramolecular protein assembly with in vivo enzymatic activity. Science 346, 1525-1528 (2014).
-
(2014)
Science
, vol.346
, pp. 1525-1528
-
-
Song, W.J.1
Tezcan, F.A.2
-
29
-
-
0842270116
-
Enzyme-like proteins from an unselected library of designed amino acid sequences
-
Wei, Y. & Hecht, M. H. Enzyme-like proteins from an unselected library of designed amino acid sequences. Prot. Eng. Des. Sel. 17, 67-75 (2004).
-
(2004)
Prot. Eng. Des. Sel.
, vol.17
, pp. 67-75
-
-
Wei, Y.1
Hecht, M.H.2
-
30
-
-
17444433002
-
The design of coiled-coil structures and assemblies
-
Woolfson, D. N. The design of coiled-coil structures and assemblies. Adv. Protein Chem. 70, 79-112 (2005).
-
(2005)
Adv. Protein Chem.
, vol.70
, pp. 79-112
-
-
Woolfson, D.N.1
-
31
-
-
0030271515
-
Coiled coils: New structures and new functions
-
Lupas, A. Coiled coils: new structures and new functions. Trends Biochem. Sci. 21, 375-382 (1996).
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 375-382
-
-
Lupas, A.1
-
32
-
-
0035910272
-
How to untwist an helix: Structural principles of an helical barrel
-
Calladine, C. R., Sharff, A. & Luisi, B. How to untwist an helix: structural principles of an helical barrel. J. Mol. Biol. 305, 603-618 (2001).
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 603-618
-
-
Calladine, C.R.1
Sharff, A.2
Luisi, B.3
-
33
-
-
84865288368
-
New currency for old rope: From coiled-coil assemblies to helical barrels
-
Woolfson, D. N., Bartlett, G. J., Bruning, M. & Thomson, A. R. New currency for old rope: from coiled-coil assemblies to helical barrels. Curr. Opin. Struct. Biol. 22, 432-441 (2012).
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 432-441
-
-
Woolfson, D.N.1
Bartlett, G.J.2
Bruning, M.3
Thomson, A.R.4
-
34
-
-
81355127213
-
A de novo peptide hexamer with a mutable channel
-
Zaccai, N. R. et al. A de novo peptide hexamer with a mutable channel. Nature Chem. Biol. 7, 935-941 (2011).
-
(2011)
Nature Chem. Biol.
, vol.7
, pp. 935-941
-
-
Zaccai, N.R.1
-
35
-
-
84908244550
-
Computational design of water-soluble helical barrels
-
Thomson, A. R. et al. Computational design of water-soluble helical barrels. Science 346, 485-488 (2014).
-
(2014)
Science
, vol.346
, pp. 485-488
-
-
Thomson, A.R.1
-
36
-
-
84883303145
-
Accessibility, reactivity, and selectivity of side chains within a channel of de novo peptide assembly
-
Burton, A. J. et al. Accessibility, reactivity, and selectivity of side chains within a channel of de novo peptide assembly. J. Am. Chem. Soc. 135, 12524-12527 (2013).
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 12524-12527
-
-
Burton, A.J.1
-
37
-
-
56449128760
-
Structural reorganization and preorganization in enzyme active sites: Comparisons of experimental and theoretically ideal active site geometries in the multistep serine esterase reaction cycle
-
Smith, A. J. T. et al. Structural reorganization and preorganization in enzyme active sites: comparisons of experimental and theoretically ideal active site geometries in the multistep serine esterase reaction cycle. J. Am. Chem. Soc. 130, 15361-15373 (2008).
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 15361-15373
-
-
Smith, A.J.T.1
-
38
-
-
84911394089
-
CCBuilder: An interactive web-based tool for building, designing and assessing coiled-coil protein assemblies
-
Wood, C. W. et al. CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies. Bioinformatics 30, 3029-3035 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 3029-3035
-
-
Wood, C.W.1
-
39
-
-
84866511067
-
A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology
-
Fletcher, J. M. et al. A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology. ACS Synth. Biol. 1, 240-250 (2012).
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 240-250
-
-
Fletcher, J.M.1
-
40
-
-
84908235298
-
High thermodynamic stability of parametrically designed helical bundles
-
Huang, P.-S. et al. High thermodynamic stability of parametrically designed helical bundles. Science 346, 481-485 (2014).
-
(2014)
Science
, vol.346
, pp. 481-485
-
-
Huang, P.-S.1
-
41
-
-
68249097450
-
PoreWalker: A novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
-
Pellegrini-Calace, M., Maiwald, T. & Thornton, J. M. PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure. PLoS Comput. Biol. 5, e1000440 (2009).
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000440
-
-
Pellegrini-Calace, M.1
Maiwald, T.2
Thornton, J.M.3
-
42
-
-
0014056388
-
Chymotrypsin enzyme concentration and kinetics
-
Bender, M. L., Kezdy, F. J. & Wedler, F. C. Chymotrypsin enzyme concentration and kinetics. J. Chem. Educ. 44, 84-87 (1967).
-
(1967)
J. Chem. Educ.
, vol.44
, pp. 84-87
-
-
Bender, M.L.1
Kezdy, F.J.2
Wedler, F.C.3
-
43
-
-
0000171590
-
The kinetics of the chymotrypsin-catalyzed hydrolysis of p-nitrophenyl acetate
-
Kezdy, F. J. & Bender, M. L. The kinetics of the chymotrypsin-catalyzed hydrolysis of p-nitrophenyl acetate. Biochemistry 1, 1097-1106 (1962).
-
(1962)
Biochemistry
, vol.1
, pp. 1097-1106
-
-
Kezdy, F.J.1
Bender, M.L.2
-
44
-
-
0014011558
-
The kinetics of the chymotrypsin-catalyzed hydrolysis of p-nitrophenyl acetate in organic solvent-water mixtures
-
Faller, L. & Sturtevant, J. M. The kinetics of the chymotrypsin-catalyzed hydrolysis of p-nitrophenyl acetate in organic solvent-water mixtures. J. Biol. Chem. 241, 4825-4834 (1966).
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 4825-4834
-
-
Faller, L.1
Sturtevant, J.M.2
|