-
1
-
-
33744981623
-
Image processing with ImageJ
-
Abràmoff, M. D., Magalhães, P. J., and Ram, S. J. (2004). Image processing with ImageJ. Biophotonics Intern. 11, 36-42.
-
(2004)
Biophotonics Intern.
, vol.11
, pp. 36-42
-
-
Abràmoff, M.D.1
Magalhães, P.J.2
Ram, S.J.3
-
2
-
-
69149106357
-
Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome
-
Adelson, D. L., Raison, J. M., and Edgar, R. C. (2009). Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome. Proc. Natl Acad. Sci. USA 106, 12 855-12 860. doi:10. 1073/PNAS. 0901282106
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 12855-12860
-
-
Adelson, D.L.1
Raison, J.M.2
Edgar, R.C.3
-
3
-
-
33750275510
-
The BiSearch web server
-
Arányi, T., Váradi, A., Simon, I., and Tusnády, G. E. (2006). The BiSearch web server. BMC Bioinformatics 7, 431-437. doi:10. 1186/1471-2105-7-431
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 431-437
-
-
Arányi, T.1
Váradi, A.2
Simon, I.3
Tusnády, G.E.4
-
4
-
-
84983388267
-
LINE-1 hypomethylation in a choline-deficiency-induced liver cancer in rats: Dependence on feeding period
-
Asada, K., Kotake, Y., Asada, R., Saunders, D., Broyles, R. H., Towner, R. A., Fukui, H., and Floyd, R. A. (2006). LINE-1 hypomethylation in a choline-deficiency-induced liver cancer in rats: dependence on feeding period. BioMed Research International 2006, 17 142.
-
(2006)
BioMed Research International
, vol.17
, pp. 142
-
-
Asada, K.1
Kotake, Y.2
Asada, R.3
Saunders, D.4
Broyles, R.H.5
Towner, R.A.6
Fukui, H.7
Floyd, R.A.8
-
5
-
-
3142782118
-
Effect of limited DNA methylation reprogramming in the normal sheep embryo on somatic cell nuclear transfer
-
Beaujean, N., Taylor, J., Gardner, J., Wilmut, I., Meehan, R., and Young, L. (2004). Effect of limited DNA methylation reprogramming in the normal sheep embryo on somatic cell nuclear transfer. Biol. Reprod. 71, 185-193. doi:10. 1095/BIOLREPROD. 103. 026559
-
(2004)
Biol. Reprod.
, vol.71
, pp. 185-193
-
-
Beaujean, N.1
Taylor, J.2
Gardner, J.3
Wilmut, I.4
Meehan, R.5
Young, L.6
-
6
-
-
32944476464
-
Expression of LINE-1 retroposons is essential for murine preimplantation development
-
Beraldi, R., Pittoggi, C., Sciamanna, I., Mattei, E., and Spadafora, C. (2006). Expression of LINE-1 retroposons is essential for murine preimplantation development. Mol. Reprod. Dev. 73, 279-287. doi:10. 1002/MRD. 20423
-
(2006)
Mol. Reprod. Dev.
, vol.73
, pp. 279-287
-
-
Beraldi, R.1
Pittoggi, C.2
Sciamanna, I.3
Mattei, E.4
Spadafora, C.5
-
7
-
-
38749122458
-
Epigenetic differences between male and female bovine blastocysts produced in vitro
-
Bermejo-Alvarez, P., Rizos, D., Rath, D., Lonergan, P., and Gutierrez-Adan, A. (2008). Epigenetic differences between male and female bovine blastocysts produced in vitro. Physiol. Genomics 32, 264-272. doi:10. 1152/PHYSIOLGENOMICS. 00234. 2007
-
(2008)
Physiol. Genomics
, vol.32
, pp. 264-272
-
-
Bermejo-Alvarez, P.1
Rizos, D.2
Rath, D.3
Lonergan, P.4
Gutierrez-Adan, A.5
-
8
-
-
74549225082
-
Developmental kinetics and gene expression in male and female bovine embryos produced in vitro with sex-sorted spermatozoa
-
Bermejo-Á lvarez, P., Lonergan, P., Rath, D., Gutiérrez-Adan, A., and Rizos, D. (2010a). Developmental kinetics and gene expression in male and female bovine embryos produced in vitro with sex-sorted spermatozoa. Reprod. Fertil. Dev. 22, 426-436. doi:10. 1071/RD09142
-
(2010)
Reprod. Fertil. Dev.
, vol.22
, pp. 426-436
-
-
Bermejo-Álvarez, P.1
Lonergan, P.2
Rath, D.3
Gutiérrez-Adan, A.4
Rizos, D.5
-
9
-
-
77649268853
-
Sex determines the expression level of one third of the actively expressed genes in bovine blastocysts
-
Bermejo-Alvarez, P., Rizos, D., Rath, D., Lonergan, P., and Gutierrez-Adan, A. (2010b). Sex determines the expression level of one third of the actively expressed genes in bovine blastocysts. Proc. Natl Acad. Sci. USA 107, 3394-3399. doi:10. 1073/PNAS. 0913843107
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 3394-3399
-
-
Bermejo-Alvarez, P.1
Rizos, D.2
Rath, D.3
Lonergan, P.4
Gutierrez-Adan, A.5
-
10
-
-
23044490934
-
Transposon silencing and imprint establishment in mammalian germ cells
-
(Eds B. Stillman and D. Stewart.). (Cold Spring Harbor Laboratory Press: Exeter, DEV, UK.)
-
Bestor, T., and Bourc'his, D. (2004). Transposon silencing and imprint establishment in mammalian germ cells. In 'Cold Spring Harbor Symposia on Quantitative Biology'. (Eds B. Stillman and D. Stewart.) pp. 381-388. (Cold Spring Harbor Laboratory Press: Exeter, DEV, UK.)
-
(2004)
Cold Spring Harbor Symposia on Quantitative Biology
, pp. 381-388
-
-
Bestor, T.1
Bourc'His, D.2
-
11
-
-
0036120654
-
Dnmt1 overexpression causes genomic hypermethylation, loss of imprinting, and embryonic lethality
-
Biniszkiewicz, D., Gribnau, J., Ramsahoye, B., Gaudet, F., Eggan, K., Humpherys, D., Mastrangelo, M. A., Jun, Z., Walter, J., and Jaenisch, R. (2002). Dnmt1 overexpression causes genomic hypermethylation, loss of imprinting, and embryonic lethality. Mol. Cell. Biol. 22, 2124-2135. doi:10. 1128/MCB. 22. 7. 2124-2135. 2002
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 2124-2135
-
-
Biniszkiewicz, D.1
Gribnau, J.2
Ramsahoye, B.3
Gaudet, F.4
Eggan, K.5
Humpherys, D.6
Mastrangelo, M.A.7
Jun, Z.8
Walter, J.9
Jaenisch, R.10
-
12
-
-
0035797888
-
Delayed and incomplete reprogramming of chromosome methylation patterns in bovine cloned embryos
-
Bourc'his, D., Le Bourhis, D., Patin, D., Niveleau, A., Comizzoli, P., Renard, J. P., and Viegas-Pequignot, E. (2001). Delayed and incomplete reprogramming of chromosome methylation patterns in bovine cloned embryos. Curr. Biol. 11, 1542-1546. doi:10. 1016/S0960-9822(01) 00480-8
-
(2001)
Curr. Biol.
, vol.11
, pp. 1542-1546
-
-
Bourc'His, D.1
Le Bourhis, D.2
Patin, D.3
Niveleau, A.4
Comizzoli, P.5
Renard, J.P.6
Viegas-Pequignot, E.7
-
13
-
-
84970925445
-
Oxidative stress induced changes in epigenetic modifying gene mRNAin pre-implantation in vitro bovine embryos
-
Burroughs, C. A., Williamson, G. L., Golding, M. C., and Long, C. R. (2013). Oxidative stress induced changes in epigenetic modifying gene mRNAin pre-implantation in vitro bovine embryos. Reprod. Fertil. Dev. 25, 149. doi:10. 1071/RDV25N1AB3
-
(2013)
Reprod. Fertil. Dev.
, vol.25
, pp. 149
-
-
Burroughs, C.A.1
Williamson, G.L.2
Golding, M.C.3
Long, C.R.4
-
14
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M. W., and Shipley, G. L. (2009). The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 55, 611-622. doi:10. 1373/CLINCHEM. 2008. 112797
-
(2009)
Clin. Chem.
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
Mueller, R.7
Nolan, T.8
Pfaffl, M.W.9
Shipley, G.L.10
-
15
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. (1988). Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16, 10 881-10 890. doi:10. 1093/NAR/16. 22. 10881
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
16
-
-
0032998796
-
X inactive-specific transcript (Xist) expression and X chromosome inactivation in the preattachment bovine embryo
-
De La Fuente, R., Hahnel, A., Basrur, P. K., and King, W. A. (1999). X inactive-specific transcript (Xist) expression and X chromosome inactivation in the preattachment bovine embryo. Biol. Reprod. 60, 769-775. doi:10. 1095/BIOLREPROD60. 3. 769
-
(1999)
Biol. Reprod.
, vol.60
, pp. 769-775
-
-
De La Fuente, R.1
Hahnel, A.2
Basrur, P.K.3
King, W.A.4
-
17
-
-
0035923602
-
Conservation of methylation reprogramming in mammalian development: Aberrant reprogramming in cloned embryos
-
Dean, W., Santos, F., Stojkovic, M., Zakhartchenko, V., Walter, J., Wolf, E., and Reik, W. (2001). Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos. Proc. Natl Acad. Sci. USA 98, 13 734-13 738. doi:10. 1073/PNAS. 241522698
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13734-13738
-
-
Dean, W.1
Santos, F.2
Stojkovic, M.3
Zakhartchenko, V.4
Walter, J.5
Wolf, E.6
Reik, W.7
-
18
-
-
79951497235
-
DNA methylation in porcine preimplantation embryos developed in vivo and produced by in vitro fertilization, parthenogenetic activation and somatic cell nuclear transfer
-
Deshmukh, R. S., Østrup, O., Østrup, E., Vejlsted, M., Niemann, H., Lucas-Hahn, A., Petersen, B., Li, J., Callesen, H., and Hyttel, P. (2011). DNA methylation in porcine preimplantation embryos developed in vivo and produced by in vitro fertilization, parthenogenetic activation and somatic cell nuclear transfer. Epigenetics 6, 177-187. doi:10. 4161/EPI. 6. 2. 13519
-
(2011)
Epigenetics
, vol.6
, pp. 177-187
-
-
Deshmukh, R.S.1
Østrup, O.2
Østrup, E.3
Vejlsted, M.4
Niemann, H.5
Lucas-Hahn, A.6
Petersen, B.7
Li, J.8
Callesen, H.9
Hyttel, P.10
-
19
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux, M., Esnault, C., and Heidmann, T. (2003). LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35, 41-48. doi:10. 1038/NG1223
-
(2003)
Nat. Genet.
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
20
-
-
84879184903
-
Dynamics of DNA methylation during early development of the preimplantation bovine embryo
-
Dobbs, K. B., Rodriguez, M., Sudano, M. J., Ortega, M. S., and Hansen, P. J. (2013). Dynamics of DNA methylation during early development of the preimplantation bovine embryo. PLoS ONE 8, e66230. doi:10. 1371/JOURNAL. PONE. 0066230
-
(2013)
PLoS ONE
, vol.8
, pp. e66230
-
-
Dobbs, K.B.1
Rodriguez, M.2
Sudano, M.J.3
Ortega, M.S.4
Hansen, P.J.5
-
21
-
-
0037068353
-
DNAmethylation in cancer: Too much, but also too little
-
Ehrlich, M. (2002). DNAmethylation in cancer: too much, but also too little. Oncogene 21, 5400-5413. doi:10. 1038/SJ. ONC. 1205651
-
(2002)
Oncogene
, vol.21
, pp. 5400-5413
-
-
Ehrlich, M.1
-
22
-
-
0018146945
-
Both X chromosomes function before visible X-chromosome inactivation in female mouse embryos
-
Epstein, C. J., Smith, S., Travis, B., and Tucker, G. (1978). Both X chromosomes function before visible X-chromosome inactivation in female mouse embryos. Nature 274, 500-503. doi:10. 1038/274500A0
-
(1978)
Nature
, vol.274
, pp. 500-503
-
-
Epstein, C.J.1
Smith, S.2
Travis, B.3
Tucker, G.4
-
23
-
-
11144285884
-
DNA methylation pattern in human zygotes and developing embryos
-
Fulka, H., Mrazek, M., Tepla, O., and Fulka, J. (2004). DNA methylation pattern in human zygotes and developing embryos. Reproduction 128, 703-708. doi:10. 1530/REP. 1. 00217
-
(2004)
Reproduction
, vol.128
, pp. 703-708
-
-
Fulka, H.1
Mrazek, M.2
Tepla, O.3
Fulka, J.4
-
24
-
-
77957196797
-
Genome-wide detection and characterization of endogenous retroviruses in Bos taurus
-
Garcia-Etxebarria, K., and Jugo, B. M. (2010). Genome-wide detection and characterization of endogenous retroviruses in Bos taurus. J. Virol. 84, 10 852-10 862. doi:10. 1128/JVI. 00106-10
-
(2010)
J. Virol.
, vol.84
, pp. 10852-10862
-
-
Garcia-Etxebarria, K.1
Jugo, B.M.2
-
25
-
-
29144510503
-
Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos
-
Goossens, K., Van Poucke, M., Van Soom, A., Vandesompele, J., Van Zeveren, A., and Peelman, L. J. (2005). Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos. BMC Dev. Biol. 5, 27. doi:10. 1186/1471-213X-5-27
-
(2005)
BMC Dev. Biol.
, vol.5
, pp. 27
-
-
Goossens, K.1
Van Poucke, M.2
Van Soom, A.3
Vandesompele, J.4
Van Zeveren, A.5
Peelman, L.J.6
-
26
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu, T.-P., Guo, F., Yang, H., Wu, H.-P., Xu, G.-F., Liu, W., Xie, Z.-G., Shi, L., He, X., and Jin, S.-g. (2011). The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477, 606-610. doi:10. 1038/NATURE10443
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.-P.1
Guo, F.2
Yang, H.3
Wu, H.-P.4
Xu, G.-F.5
Liu, W.6
Xie, Z.-G.7
Shi, L.8
He, X.9
Jin, S.-G.10
-
27
-
-
0030202033
-
Relationship between stage of development and sex of bovine IVM-IVF embryos cultured in vitro versus in the sheep oviduct
-
Gutiérrez-Adán, A., Behboodi, E., Andersen, G., Medrano, J., and Murray, J. (1996). Relationship between stage of development and sex of bovine IVM-IVF embryos cultured in vitro versus in the sheep oviduct. Theriogenology 46, 515-525. doi:10. 1016/0093-691X(96)00173-2
-
(1996)
Theriogenology
, vol.46
, pp. 515-525
-
-
Gutiérrez-Adán, A.1
Behboodi, E.2
Andersen, G.3
Medrano, J.4
Murray, J.5
-
28
-
-
0035669948
-
Influence of glucose on the sex ratio of bovine IVM/IVF embryos cultured in vitro
-
Gutiérrez-Adán, A., Granados, J., Pintado, B., and De La Fuente, J. (2001). Influence of glucose on the sex ratio of bovine IVM/IVF embryos cultured in vitro. Reprod. Fertil. Dev. 13, 361-365. doi:10. 1071/RD00039
-
(2001)
Reprod. Fertil. Dev.
, vol.13
, pp. 361-365
-
-
Gutiérrez-Adán, A.1
Granados, J.2
Pintado, B.3
De La Fuente, J.4
-
29
-
-
33748107733
-
Methylation dynamics in the early mammalian embryo: Implications of genome reprogramming defects for development
-
(Eds W. Doerfler and P. Böhm.). (Springer: Berlin.)
-
Haaf, T. (2006). Methylation dynamics in the early mammalian embryo: implications of genome reprogramming defects for development. In 'DNA Methylation: Development, Genetic Disease and Cancer'. (Eds W. Doerfler and P. Böhm.) pp. 13-22. (Springer: Berlin.)
-
(2006)
DNA Methylation: Development, Genetic Disease and Cancer
, pp. 13-22
-
-
Haaf, T.1
-
30
-
-
84859434513
-
A novel approach to sexing bovine blastocysts using male-specific gene expression
-
Hamilton, C. K., Combe, A., Caudle, J., Ashkar, F. A., Macaulay, A. D., Blondin, P., and King, W. A. (2012). A novel approach to sexing bovine blastocysts using male-specific gene expression. Theriogenology 77, 1587-1596. doi:10. 1016/J. THERIOGENOLOGY. 2011. 11. 027
-
(2012)
Theriogenology
, vol.77
, pp. 1587-1596
-
-
Hamilton, C.K.1
Combe, A.2
Caudle, J.3
Ashkar, F.A.4
Macaulay, A.D.5
Blondin, P.6
King, W.A.7
-
31
-
-
77957932941
-
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
-
Harris, R. A., Wang, T., Coarfa, C., Nagarajan, R. P., Hong, C., Downey, S. L., Johnson, B. E., Fouse, S. D., Delaney, A., Zhao, Y., Olshen, A., Ballinger, T., Zhou, X., Forsberg, K. J., Gu, J., Echipare, L., O'Geen, H., Lister, R., Pelizzola, M., Xi, Y., Epstein, C. B., Bernstein, B. E., Hawkins, R. D., Ren, B., Chung, W.-Y., Gu, H., Bock, C., Gnirke, A., Zhang, M. Q., Haussler, D., Ecker, J. R., Li, W., Farnham, P. J., Waterland, R. A., Meissner, A., Marra, M. A., Hirst, M., Milosavljevic, A., and Costello, J. F. (2010). Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat. Biotechnol. 28, 1097-1105. doi:10. 1038/NBT. 1682
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1097-1105
-
-
Harris, R.A.1
Wang, T.2
Coarfa, C.3
Nagarajan, R.P.4
Hong, C.5
Downey, S.L.6
Johnson, B.E.7
Fouse, S.D.8
Delaney, A.9
Zhao, Y.10
Olshen, A.11
Ballinger, T.12
Zhou, X.13
Forsberg, K.J.14
Gu, J.15
Echipare, L.16
O'Geen, H.17
Lister, R.18
Pelizzola, M.19
Xi, Y.20
Epstein, C.B.21
Bernstein, B.E.22
Hawkins, R.D.23
Ren, B.24
Chung, W.-Y.25
Gu, H.26
Bock, C.27
Gnirke, A.28
Zhang, M.Q.29
Haussler, D.30
Ecker, J.R.31
Li, W.32
Farnham, P.J.33
Waterland, R.A.34
Meissner, A.35
Marra, M.A.36
Hirst, M.37
Milosavljevic, A.38
Costello, J.F.39
more..
-
32
-
-
0030940594
-
Identification of critical CpG sites for repression of L1 transcription by DNAmethylation
-
Hata, K., and Sakaki, Y. (1997). Identification of critical CpG sites for repression of L1 transcription by DNAmethylation. Gene 189, 227-234. doi:10. 1016/S0378-1119(96)00856-6
-
(1997)
Gene
, vol.189
, pp. 227-234
-
-
Hata, K.1
Sakaki, Y.2
-
33
-
-
45449087921
-
QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
-
Hellemans, J., Mortier, G., De Paepe, A., Speleman, F., and Vandesompele, J. (2007). qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 8, R19. doi:10. 1186/GB-2007-8-2-R19
-
(2007)
Genome Biol.
, vol.8
, pp. R19
-
-
Hellemans, J.1
Mortier, G.2
De Paepe, A.3
Speleman, F.4
Vandesompele, J.5
-
34
-
-
34250701215
-
Retrotransposons influence the mouse transcriptome: Implication for the divergence of genetic traits
-
Horie, K., Saito, E. S., Keng, V. W., Ikeda, R., Ishihara, H., and Takeda, J. (2007). Retrotransposons influence the mouse transcriptome: implication for the divergence of genetic traits. Genetics 176, 815-827. doi:10. 1534/GENETICS. 107. 071647
-
(2007)
Genetics
, vol.176
, pp. 815-827
-
-
Horie, K.1
Saito, E.S.2
Keng, V.W.3
Ikeda, R.4
Ishihara, H.5
Takeda, J.6
-
35
-
-
33847311749
-
Genomic DNA methylation patterns in bovine preimplantation embryos derived from in vitro fertilization
-
Hou, J., Liu, L., Lei, T., Cui, X., An, X., and Chen, Y. (2007). Genomic DNA methylation patterns in bovine preimplantation embryos derived from in vitro fertilization. Sci. China C Life Sci. 50, 56-61. doi:10. 1007/S11427-007-0003-7
-
(2007)
Sci. China C Life Sci.
, vol.50
, pp. 56-61
-
-
Hou, J.1
Liu, L.2
Lei, T.3
Cui, X.4
An, X.5
Chen, Y.6
-
36
-
-
38049164130
-
Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice
-
Howard, G., Eiges, R., Gaudet, F., Jaenisch, R., and Eden, A. (2008). Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice. Oncogene 27, 404-408. doi:10. 1038/SJ. ONC. 1210631
-
(2008)
Oncogene
, vol.27
, pp. 404-408
-
-
Howard, G.1
Eiges, R.2
Gaudet, F.3
Jaenisch, R.4
Eden, A.5
-
37
-
-
19744374816
-
The de novo methylation activity of Dnmt3a is distinctly different than that of Dnmt1
-
Hsieh, C. L. (2005). The de novo methylation activity of Dnmt3a is distinctly different than that of Dnmt1. BMC Biochem. 6, 6. doi:10. 1186/1471-2091-6-6
-
(2005)
BMC Biochem.
, vol.6
, pp. 6
-
-
Hsieh, C.L.1
-
38
-
-
84870618066
-
Transcriptional activation of transposable elements in mouse zygotes is independent of Tet3-mediated 5-methylcytosine oxidation
-
Inoue, A., Matoba, S., and Zhang, Y. (2012). Transcriptional activation of transposable elements in mouse zygotes is independent of Tet3-mediated 5-methylcytosine oxidation. Cell Res. 22, 1640-1649. doi:10. 1038/CR. 2012. 160
-
(2012)
Cell Res.
, vol.22
, pp. 1640-1649
-
-
Inoue, A.1
Matoba, S.2
Zhang, Y.3
-
39
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka, J., Kapitonov, V. V., Pavlicek, A., Klonowski, P., Kohany, O., and Walichiewicz, J. (2005). Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462-467. doi:10. 1159/000084979
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
40
-
-
0037307630
-
MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos
-
Kigami, D., Minami, N., Takayama, H., and Imai, H. (2003). MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos. Biol. Reprod. 68, 651-654. doi:10. 1095/BIOLREPROD. 102. 007906
-
(2003)
Biol. Reprod.
, vol.68
, pp. 651-654
-
-
Kigami, D.1
Minami, N.2
Takayama, H.3
Imai, H.4
-
41
-
-
84857467013
-
Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
-
Kobayashi, H., Sakurai, T., Imai, M., Takahashi, N., Fukuda, A., Yayoi, O., and Kono, T. (2012). Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 8, e1002440. doi:10. 1371/JOURNAL. PGEN. 1002440
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002440
-
-
Kobayashi, H.1
Sakurai, T.2
Imai, M.3
Takahashi, N.4
Fukuda, A.5
Yayoi, O.6
Kono, T.7
-
42
-
-
36448991500
-
Clustal W and Clustal X version 2 0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., and Higgins, D. G. (2007). Clustal W and Clustal X version 2. 0. Bioinformatics 23, 2947-2948. doi:10. 1093/BIOINFORMATICS/BTM404
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
43
-
-
84856301893
-
Persistence of cytosine methylation of DNA following fertilisation in the mouse
-
Li, Y., and O'Neill, C. (2012). Persistence of cytosine methylation of DNA following fertilisation in the mouse. PLoS ONE 7, e30687. doi:10. 1371/JOURNAL. PONE. 0030687
-
(2012)
PLoS ONE
, vol.7
, pp. e30687
-
-
Li, Y.1
O'Neill, C.2
-
44
-
-
77955433253
-
Whole genome DNA methylation analysis based on high throughput sequencing technology
-
Li, N., Ye, M., Li, Y., Yan, Z., Butcher, L. M., Sun, J., Han, X., Chen, Q., Zhang, X., and Wang, J. (2010). Whole genome DNA methylation analysis based on high throughput sequencing technology. Methods 52, 203-212. doi:10. 1016/J. YMETH. 2010. 04. 009
-
(2010)
Methods
, vol.52
, pp. 203-212
-
-
Li, N.1
Ye, M.2
Li, Y.3
Yan, Z.4
Butcher, L.M.5
Sun, J.6
Han, X.7
Chen, Q.8
Zhang, X.9
Wang, J.10
-
45
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock, B. (1984). The significance of responses of the genome to challenge. Science 226, 792-801. doi:10. 1126/SCIENCE. 15739260
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
McClintock, B.1
-
46
-
-
84862270547
-
MORC family ATPases required for heterochromatin condensation and gene silencing
-
Moissiard, G., Cokus, S. J., Cary, J., Feng, S., Billi, A. C., Stroud, H., Husmann, D., Zhan, Y., Lajoie, B. R., and McCord, R. P. (2012). MORC family ATPases required for heterochromatin condensation and gene silencing. Science 336, 1448-1451. doi:10. 1126/SCIENCE. 1221472
-
(2012)
Science
, vol.336
, pp. 1448-1451
-
-
Moissiard, G.1
Cokus, S.J.2
Cary, J.3
Feng, S.4
Billi, A.C.5
Stroud, H.6
Husmann, D.7
Zhan, Y.8
Lajoie, B.R.9
McCord, R.P.10
-
47
-
-
0037339468
-
Environmental factors affecting transcription of the human L1 retrotransposon II
-
Morales, J. F., Snow, E. T., and Murnane, J. P. (2003). Environmental factors affecting transcription of the human L1 retrotransposon. II. Stressors. Mutagenesis 18, 151-158. doi:10. 1093/MUTAGE/18. 2. 151
-
(2003)
Stressors. Mutagenesis
, vol.18
, pp. 151-158
-
-
Morales, J.F.1
Snow, E.T.2
Murnane, J.P.3
-
48
-
-
84857160311
-
Trophoblast-specific DNA methylation occurs after the segregation of the trophectoderm and inner cell mass in the mouse periimplantation embryo
-
Nakanishi, M. O., Hayakawa, K., Nakabayashi, K., Hata, K., Shiota, K., and Tanaka, S. (2012). Trophoblast-specific DNA methylation occurs after the segregation of the trophectoderm and inner cell mass in the mouse periimplantation embryo. Epigenetics 7, 173-182. doi:10. 4161/EPI. 7. 2. 18962
-
(2012)
Epigenetics
, vol.7
, pp. 173-182
-
-
Nakanishi, M.O.1
Hayakawa, K.2
Nakabayashi, K.3
Hata, K.4
Shiota, K.5
Tanaka, S.6
-
49
-
-
0031860739
-
Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
-
Okano, M., Xie, S., and Li, E. (1998). Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nature genetics 19, 219-220. doi:10. 1038/890
-
(1998)
Nature Genetics
, vol.19
, pp. 219-220
-
-
Okano, M.1
Xie, S.2
Li, E.3
-
50
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
Okano, M., Bell, D. W., Haber, D. A., and Li, E. (1999). DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99, 247-257. doi:10. 1016/S0092-8674(00)81656-6
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
51
-
-
0036899669
-
A mouse model of human L1 retrotransposition
-
Ostertag, E. M., DeBerardinis, R. J., Goodier, J. L., Zhang, Y., Yang, N., Gerton, G. L., and Kazazian, H. H. (2002). A mouse model of human L1 retrotransposition. Nat. Genet. 32, 655-660. doi:10. 1038/NG1022
-
(2002)
Nat. Genet.
, vol.32
, pp. 655-660
-
-
Ostertag, E.M.1
DeBerardinis, R.J.2
Goodier, J.L.3
Zhang, Y.4
Yang, N.5
Gerton, G.L.6
Kazazian, H.H.7
-
52
-
-
5044251591
-
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
-
Peaston, A. E., Evsikov, A. V., Graber, J. H., deVries, W. N., Holbrook, A. E., Solter, D., and Knowles, B. B. (2004). Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev. Cell 7, 597-606. doi:10. 1016/J. DEVCEL. 2004. 09. 004
-
(2004)
Dev. Cell
, vol.7
, pp. 597-606
-
-
Peaston, A.E.1
Evsikov, A.V.2
Graber, J.H.3
DeVries, W.N.4
Holbrook, A.E.5
Solter, D.6
Knowles, B.B.7
-
53
-
-
38149045693
-
DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression
-
Perillo, B., Ombra, M. N., Bertoni, A., Cuozzo, C., Sacchetti, S., Sasso, A., Chiariotti, L., Malorni, A., Abbondanza, C., and Avvedimento, E. V. (2008). DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression. Science 319, 202-206. doi:10. 1126/SCIENCE. 1147674
-
(2008)
Science
, vol.319
, pp. 202-206
-
-
Perillo, B.1
Ombra, M.N.2
Bertoni, A.3
Cuozzo, C.4
Sacchetti, S.5
Sasso, A.6
Chiariotti, L.7
Malorni, A.8
Abbondanza, C.9
Avvedimento, E.V.10
-
54
-
-
84857888415
-
The nonautonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery
-
Raiz, J., Damert, A., Chira, S., Held, U., Klawitter, S., Hamdorf, M., Löwer, J., Strätling, W. H., Löwer, R., and Schumann, G. G. (2012). The nonautonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery. Nucleic Acids Res. 40, 1666-1683. doi:10. 1093/NAR/GKR863
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1666-1683
-
-
Raiz, J.1
Damert, A.2
Chira, S.3
Held, U.4
Klawitter, S.5
Hamdorf, M.6
Löwer, J.7
Strätling, W.H.8
Löwer, R.9
Schumann, G.G.10
-
55
-
-
0035839126
-
Epigenetic reprogramming in mammalian development
-
Reik, W., Dean, W., and Walter, J. (2001). Epigenetic reprogramming in mammalian development. Science 293, 1089-1093. doi:10. 1126/SCIENCE. 1063443
-
(2001)
Science
, vol.293
, pp. 1089-1093
-
-
Reik, W.1
Dean, W.2
Walter, J.3
-
56
-
-
0037232803
-
Bovine embryo culture in the presence or absence of serum: Implications for blastocyst development, cryotolerance, and messenger RNA expression
-
Rizos, D., Gutierrez-Adan, A., Perez-Garnelo, S., De La Fuente, J., Boland, M., and Lonergan, P. (2003). Bovine embryo culture in the presence or absence of serum: implications for blastocyst development, cryotolerance, and messenger RNA expression. Biol. Reprod. 68, 236-243. doi:10. 1095/BIOLREPROD. 102. 007799
-
(2003)
Biol. Reprod.
, vol.68
, pp. 236-243
-
-
Rizos, D.1
Gutierrez-Adan, A.2
Perez-Garnelo, S.3
De La Fuente, J.4
Boland, M.5
Lonergan, P.6
-
57
-
-
0033990048
-
Primer3 on theWWWfor general users and for biologist programmers
-
(Eds S. Misener and S. A. Krawetz.). (Springer: New Jersey.)
-
Rozen, S., and Skaletsky, H. (1999). Primer3 on theWWWfor general users and for biologist programmers. In 'Bioinformatics methods and protocols'. (Eds S. Misener and S. A. Krawetz.) pp. 365-86. (Springer: New Jersey.)
-
(1999)
Bioinformatics Methods and Protocols
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
58
-
-
33746533641
-
Using immunofluorescence to observe methylation changes in mammalian preimplantation embryos
-
Eds S. Pells.) (Springer: New Jersey.)
-
Santos, F., and Dean, W. (2006). Using immunofluorescence to observe methylation changes in mammalian preimplantation embryos. In 'Nuclear Reprogramming'. (Eds S. Pells.) pp. 129-38. (Springer: New Jersey.)
-
(2006)
Nuclear Reprogramming
, pp. 129-138
-
-
Santos, F.1
Dean, W.2
-
59
-
-
0038686582
-
Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos
-
Santos, F., Zakhartchenko, V., Stojkovic, M., Peters, A., Jenuwein, T., Wolf, E., Reik, W., and Dean, W. (2003). Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos. Curr. Biol. 13, 1116-1121. doi:10. 1016/S0960-9822(03)00419-6
-
(2003)
Curr. Biol.
, vol.13
, pp. 1116-1121
-
-
Santos, F.1
Zakhartchenko, V.2
Stojkovic, M.3
Peters, A.4
Jenuwein, T.5
Wolf, E.6
Reik, W.7
Dean, W.8
-
60
-
-
84983448912
-
L1 retrotransposons in human cancers
-
Schulz, W. A. (2006). L1 retrotransposons in human cancers. BioMed Research International 2006, 83 672.
-
(2006)
BioMed Research International
, vol.83
, pp. 672
-
-
Schulz, W.A.1
-
61
-
-
3142699890
-
Methylation reprogramming and chromosomal aneuploidy in in vivo fertilized and cloned rabbit preimplantation embryos
-
Shi, W., Dirim, F., Wolf, E., Zakhartchenko, V., and Haaf, T. (2004). Methylation reprogramming and chromosomal aneuploidy in in vivo fertilized and cloned rabbit preimplantation embryos. Biol. Reprod. 71, 340-347. doi:10. 1095/BIOLREPROD. 103. 024554
-
(2004)
Biol. Reprod.
, vol.71
, pp. 340-347
-
-
Shi, W.1
Dirim, F.2
Wolf, E.3
Zakhartchenko, V.4
Haaf, T.5
-
62
-
-
33846938255
-
Cell divisions are required for L1 retrotransposition
-
Shi, X., Seluanov, A., and Gorbunova, V. (2007). Cell divisions are required for L1 retrotransposition. Mol. Cell. Biol. 27, 1264-1270. doi:10. 1128/MCB. 01888-06
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 1264-1270
-
-
Shi, X.1
Seluanov, A.2
Gorbunova, V.3
-
63
-
-
84859910536
-
Aunique regulatory phase ofDNAmethylation in the early mammalian embryo
-
Smith, Z. D., Chan, M. M., Mikkelsen, T. S., Gu, H., Gnirke, A., Regev, A., and Meissner, A. (2012). Aunique regulatory phase ofDNAmethylation in the early mammalian embryo. Nature 484, 339-344. doi:10. 1038/NATURE10960
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
Chan, M.M.2
Mikkelsen, T.S.3
Gu, H.4
Gnirke, A.5
Regev, A.6
Meissner, A.7
-
64
-
-
3242747439
-
Endogenous reverse transcriptase: A mediator of cell proliferation and differentiation
-
Spadafora, C. (2004). Endogenous reverse transcriptase: a mediator of cell proliferation and differentiation. Cytogenet. Genome Res. 105, 346-350. doi:10. 1159/000078207
-
(2004)
Cytogenet. Genome Res.
, vol.105
, pp. 346-350
-
-
Spadafora, C.1
-
65
-
-
34548590461
-
Automated recognition of retroviral sequences in genomic data: RetroTector
-
Sperber, G. O., Airola, T., Jern, P., and Blomberg, J. (2007). Automated recognition of retroviral sequences in genomic data: RetroTector-. Nucleic Acids Res. 35, 4964-4976. doi:10. 1093/NAR/GKM515
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4964-4976
-
-
Sperber, G.O.1
Airola, T.2
Jern, P.3
Blomberg, J.4
-
66
-
-
44349159416
-
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
-
Tam, O. H., Aravin, A. A., Stein, P., Girard, A., Murchison, E. P., Cheloufi, S., Hodges, E., Anger, M., Sachidanandam, R., and Schultz, R. M. (2008). Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature 453, 534-538. doi:10. 1038/NATURE06904
-
(2008)
Nature
, vol.453
, pp. 534-538
-
-
Tam, O.H.1
Aravin, A.A.2
Stein, P.3
Girard, A.4
Murchison, E.P.5
Cheloufi, S.6
Hodges, E.7
Anger, M.8
Sachidanandam, R.9
Schultz, R.M.10
-
67
-
-
0036000043
-
Prevalence of apoptosis and inner cell allocation in bovine embryos cultured under different oxygen tensions with or without cysteine addition
-
Van Soom, A., Yuan, Y. Q., Peelman, L. J., de Matos, D. G., Dewulf, J., Laevens, H., and de Kruif, A. (2002). Prevalence of apoptosis and inner cell allocation in bovine embryos cultured under different oxygen tensions with or without cysteine addition. Theriogenology 57, 1453-1465. doi:10. 1016/S0093-691X(01)00726-9
-
(2002)
Theriogenology
, vol.57
, pp. 1453-1465
-
-
Van Soom, A.1
Yuan, Y.Q.2
Peelman, L.J.3
De Matos, D.G.4
Dewulf, J.5
Laevens, H.6
De Kruif, A.7
-
68
-
-
84860275721
-
Epigenetic impact of dietary polyphenols in cancer chemoprevention: Lifelong remodeling of our epigenomes
-
Vanden Berghe, W. (2012). Epigenetic impact of dietary polyphenols in cancer chemoprevention: lifelong remodeling of our epigenomes. Pharmacol. Res. 65, 565-576. doi:10. 1016/J. PHRS. 2012. 03. 007
-
(2012)
Pharmacol. Res.
, vol.65
, pp. 565-576
-
-
Vanden Berghe, W.1
-
69
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A., and Speleman, F. (2002). Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3, research0034-research0034. 11. doi:10. 1186/GB-2002-3-7-RESEARCH0034
-
(2002)
Genome Biology
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
70
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe, T., Totoki, Y., Toyoda, A., Kaneda, M., Kuramochi-Miyagawa, S., Obata, Y., Chiba, H., Kohara, Y., Kono, T., and Nakano, T. (2008). Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453, 539-543. doi:10. 1038/NATURE06908
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
-
71
-
-
0033957466
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D. L., Chappey, C., Lash, A. E., Leipe, D. D., Madden, T. L., Schuler, G. D., Tatusova, T. A., and Rapp, B. A. (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 28, 10-14. doi:10. 1093/NAR/28. 1. 10
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 10-14
-
-
Wheeler, D.L.1
Chappey, C.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Schuler, G.D.6
Tatusova, T.A.7
Rapp, B.A.8
-
72
-
-
84903126186
-
Replacing serum in culture medium with albumin and insulin, transferrin and selenium is the key to successful bovine embryo development in individual culture
-
Wydooghe, E., Heras, S., Dewulf, J., Piepers, S., Van Den Abbeel, E., De Sutter, P., Vandaele, L., and Van Soom, A. (2014). Replacing serum in culture medium with albumin and insulin, transferrin and selenium is the key to successful bovine embryo development in individual culture. Reprod. Fertil. Dev. 26, 717-724. doi:10. 1071/RD13043
-
(2014)
Reprod. Fertil. Dev.
, vol.26
, pp. 717-724
-
-
Wydooghe, E.1
Heras, S.2
Dewulf, J.3
Piepers, S.4
Van Den Abbeel, E.5
De Sutter, P.6
Vandaele, L.7
Van Soom, A.8
-
73
-
-
33748363713
-
L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
-
Yang, N., and Kazazian, H. H. (2006). L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nat. Struct. Mol. Biol. 13, 763-771. doi:10. 1038/NSMB1141
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 763-771
-
-
Yang, N.1
Kazazian, H.H.2
-
74
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder, J. A., Walsh, C. P., and Bestor, T. H. (1997). Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13, 335-340. doi:10. 1016/S0168-9525(97)01181-5
-
(1997)
Trends Genet.
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
75
-
-
0037400045
-
Influence of oxygen tension on apoptosis and hatching in bovine embryos cultured in vitro
-
Yuan, Y. Q., Van Soom, A., Coopman, F. O. J., Mintiens, K., Boerjan, M. L., Van Zeveren, A., de Kruif, A., and Peelman, L. J. (2003). Influence of oxygen tension on apoptosis and hatching in bovine embryos cultured in vitro. Theriogenology 59, 1585-1596. doi:10. 1016/S0093-691X(02) 01204-9
-
(2003)
Theriogenology
, vol.59
, pp. 1585-1596
-
-
Yuan, Y.Q.1
Van Soom, A.2
Coopman, F.O.J.3
Mintiens, K.4
Boerjan, M.L.5
Van Zeveren, A.6
De Kruif, A.7
Peelman, L.J.8
-
76
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415. doi:10. 1093/NAR/GKG595
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|