Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

Nature Biotechnology

Volumn 28, Issue 10, 2010, Pages 1097-1105

  Harris, R Alan ^a   Wang, Ting ^b   Coarfa, Cristian ^a   Nagarajan, Raman P ^c   Hong, Chibo ^c   Downey, Sara L ^c   Johnson, Brett E ^c   Fouse, Shaun D ^c   Delaney, Allen ^d   Zhao, Yongjun ^d   Olshen, Adam ^c   Ballinger, Tracy ^e   Zhou, Xin ^b   Forsberg, Kevin J ^b   Gu, Junchen ^b   Echipare, Lorigail ^f   O'Geen, Henriette ^f   Lister, Ryan ^g   Pelizzola, Mattia ^g   Xi, Yuanxin ^a   Epstein, Charles B ^h   Bernstein, Bradley E ^h,i   Hawkins, R David ^j   Ren, Bing ^j,k   Chung, Wen Yu ^l,m   Gu, Hongcang ^h   Bock, Christoph ^h,n,o,p   Gnirke, Andreas ^h   Zhang, Michael Q ^l,m   Haussler, David ^e   Ecker, Joseph R ^g   Li, Wei ^a   Farnham, Peggy J ^f   Waterland, Robert A ^a   Meissner, Alexander ^h,n,o   Marra, Marco A ^d   Hirst, Martin ^d   Milosavljevic, Aleksandar ^a   Costello, Joseph F ^c   more..

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d BRITISH COLUMBIA CANCER AGENCY   (Canada)

^e University of California Santa Cruz   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

^h MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

ⁱ MASSACHUSETTS GENERAL HOSPITAL   (United States)

^j LUDWIG INSTITUTE FOR CANCER RESEARCH   (Sweden)

^k UNIVERSITY OF CALIFORNIA   (United States)

^l Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

^m UNIVERSITY OF TEXAS AT DALLAS   (United States)

ⁿ Harvard University   (United States)

^o HARVARD STEM CELL INSTITUTE   (United States)

^p MAX PLANCK INSTITUTE FOR INFORMATICS   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE-SEQUENCING; DNA METHYLATION; DNA METHYLATION PATTERN; EPIGENETIC MODIFICATION; ES CELLS; HUMAN EMBRYONIC STEM CELLS; IMMUNOPRECIPITATIONS; LOWER COST; METHYLATED DNA-BINDING DOMAINS; PROFILING METHODS; REDUCED REPRESENTATION; RESTRICTION ENZYMES;

ALKYLATION; DNA; METHYLATION; RNA; STEM CELLS;

GENE ENCODING;

HISTONE;

ALLELE; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CLINICAL EVALUATION; CPG ISLAND; DIAGNOSTIC VALUE; DNA METHYLATION; EMBRYONIC STEM CELL; EPIGENETICS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC ASSOCIATION; HUMAN; HUMAN CELL; INTERMETHOD COMPARISON; METHYLATED DNA BINDING DOMAIN SEQUENCING; METHYLATED DNA IMMUNOPRECIPITATION SEQUENCING; METHYLC SEQUENCING; PRIORITY JOURNAL; REDUCED REPRESENTATION BISULFITE SEQUENCING; RELIABILITY; RNA SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM;

ALLELES; CELL LINE; CPG ISLANDS; CYTOSINE; DNA METHYLATION; EMBRYONIC STEM CELLS; EPIGENESIS, GENETIC; GENE EXPRESSION REGULATION; HUMANS; SEQUENCE ANALYSIS, DNA; SULFITES;

EID: 77957932941     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.1682     Document Type: Article

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