Whole genome DNA methylation analysis based on high throughput sequencing technology

Methods

Volumn 52, Issue 3, 2010, Pages 203-212

  Li, Ning ^a,b,c   Ye, Mingzhi ^a   Li, Yingrui ^a   Yan, Zhixiang ^a   Butcher, Lee M ^e   Sun, Jihua ^a   Han, Xu ^a   Chen, Quan ^a   zhang, Xiuqing ^a   Wang, Jun ^a,d  

^a BGI SHENZHEN   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c Chinese Academy of Sciences   (China)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

^e UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Bisulfite sequencing; DNA methylation; MBD sequencing; MeDIP sequencing

Indexed keywords

GENOMIC DNA;

ARTICLE; DNA DETERMINATION; DNA METHYLATION; DNA SEQUENCE; GENE TECHNOLOGY; GENOME ANALYSIS; GOLD STANDARD; HIGH THROUGHPUT SCREENING; HUMAN; IMMUNOPRECIPITATION; NONHUMAN; PERIPHERAL BLOOD MONONUCLEAR CELL; PRIORITY JOURNAL;

ANTIBODIES, MONOCLONAL; DNA; DNA METHYLATION; GENOME, HUMAN; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; IMMUNOPRECIPITATION; LEUKOCYTES, MONONUCLEAR; MALE; METHYL-CPG-BINDING PROTEIN 2; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SULFITES;

MAMMALIA;

EID: 77955433253     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.04.009     Document Type: Article

References (23)

1. Bestor T.H. Hum. Mol. Genet. 2000, 9(16):2395-2402.
2. Bird A. Genes Dev. 2002, 16(1):6-21.
3. Lippman Z., et al. Nature 2004, 430(6998):471-476.
4. Rhee I., et al. Nature 2002, 416(6880):552-556.
5. Henderson I.R., Jacobsen S.E. Nature 2007, 447(7143):418-424.
6. Bernstein B.E., Meissner A., Lander E.S. Cell 2007, 128(4):669-681.
7. Bird A.P. Nature 1986, 321(6067):209-213.
8. Lister R., et al. Nature 2009, 462(7271):315-322.
9. Zhang X., et al. Cell 2006, 126(6):1189-1201.
10. Keshet I., et al. Nat. Genet. 2006, 38(2):149-153.
11. Weber M., et al. Nat. Genet. 2005, 37(8):853-862.
12. Pomraning K.R., Smith K.M., Freitag M. Methods 2009, 47(3):142-150.
13. Down T.A., et al. Nat. Biotechnol. 2008, 26(7):779-785.
14. Serre D., Lee B.H., Ting A.H. Nucleic Acids Res. 2010, 38(2):391-399.
15. Gu H., et al. Nat. Methods 2010, 7(2):133-136.
16. Frommer M., et al. Proc. Natl. Acad. Sci. USA 1992, 89(5):1827-1831.
17. Lister R., et al. Cell 2008, 133(3):523-536.
18. Wang J., et al. Nature 2008, 456(7218):60-65.
19. Weber M., Schubeler D. Curr. Opin. Cell Biol. 2007, 19(3):273-280.
20. Zhang Y., et al. Genome Biol. 2008, 9(9):R137.
21. Pelizzola M., et al. Genome Res. 2008, 18(10):1652-1659.
22. Tomazou E.M., et al. BMC Med. Genomics 2008, 1:19.
23. Rakyan V., et al. Genome Res. 2008, 18:1518-1529.