-
1
-
-
0038394715
-
Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation
-
Haglund K, et al. (2003) Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation. Nat Cell Biol 5(5):461-466.
-
(2003)
Nat Cell Biol
, vol.5
, Issue.5
, pp. 461-466
-
-
Haglund, K.1
-
2
-
-
0031603760
-
A function for monoubiquitination in the internalization of a G protein-coupled receptor
-
Terrell J, Shih S, Dunn R, Hicke L (1998) A function for monoubiquitination in the internalization of a G protein-coupled receptor. Mol Cell 1(2):193-202.
-
(1998)
Mol Cell
, vol.1
, Issue.2
, pp. 193-202
-
-
Terrell, J.1
Shih, S.2
Dunn, R.3
Hicke, L.4
-
3
-
-
77953915005
-
Ubiquitin signalling in DNA replication and repair
-
Ulrich HD, Walden H (2010) Ubiquitin signalling in DNA replication and repair. Nat Rev Mol Cell Biol 11(7):479-489.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, Issue.7
, pp. 479-489
-
-
Ulrich, H.D.1
Walden, H.2
-
4
-
-
43049162227
-
Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex
-
Jin L, Williamson A, Banerjee S, Philipp I, Rape M (2008) Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. Cell 133(4):653-665.
-
(2008)
Cell
, vol.133
, Issue.4
, pp. 653-665
-
-
Jin, L.1
Williamson, A.2
Banerjee, S.3
Philipp, I.4
Rape, M.5
-
5
-
-
0034616943
-
Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain
-
Spence J, et al. (2000) Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain. Cell 102(1):67-76.
-
(2000)
Cell
, vol.102
, Issue.1
, pp. 67-76
-
-
Spence, J.1
-
6
-
-
67349256160
-
Ubiquitin-like protein activation by E1 enzymes: The apex for downstream signalling pathways
-
Schulman BA, Harper JW (2009) Ubiquitin-like protein activation by E1 enzymes: The apex for downstream signalling pathways. Nat Rev Mol Cell Biol 10(5):319-331.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.5
, pp. 319-331
-
-
Schulman, B.A.1
Harper, J.W.2
-
7
-
-
70350461507
-
Building ubiquitin chains: E2 enzymes at work
-
Ye Y, Rape M (2009) Building ubiquitin chains: E2 enzymes at work. Nat Rev Mol Cell Biol 10(11):755-764.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.11
, pp. 755-764
-
-
Ye, Y.1
Rape, M.2
-
8
-
-
84898754901
-
New insights into ubiquitin E3 ligase mechanism
-
Berndsen CE, Wolberger C (2014) New insights into ubiquitin E3 ligase mechanism. Nat Struct Mol Biol 21(4):301-307.
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.4
, pp. 301-307
-
-
Berndsen, C.E.1
Wolberger, C.2
-
9
-
-
68049084674
-
Breaking the chains: Structure and function of the deubiquitinases
-
Komander D, Clague MJ, Urbé S (2009) Breaking the chains: Structure and function of the deubiquitinases. Nat Rev Mol Cell Biol 10(8):550-563.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.8
, pp. 550-563
-
-
Komander, D.1
Clague, M.J.2
Urbé, S.3
-
10
-
-
84861783400
-
Ubiquitin-binding proteins: Decoders of ubiquitin-mediated cellular functions
-
Husnjak K, Dikic I (2012) Ubiquitin-binding proteins: Decoders of ubiquitin-mediated cellular functions. Annu Rev Biochem 81:291-322.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 291-322
-
-
Husnjak, K.1
Dikic, I.2
-
11
-
-
33750555919
-
Ubiquitin-binding domains
-
Hurley JH, Lee S, Prag G (2006) Ubiquitin-binding domains. Biochem J 399(3):361-372.
-
(2006)
Biochem J
, vol.399
, Issue.3
, pp. 361-372
-
-
Hurley, J.H.1
Lee, S.2
Prag, G.3
-
12
-
-
84959310644
-
UbSRD: The Ubiquitin Structural Relational Database
-
Harrison JS, Jacobs TM, Houlihan K, Van Doorslaer K, Kuhlman B (2016) UbSRD: The Ubiquitin Structural Relational Database. J Mol Biol 428(4):679-687.
-
(2016)
J Mol Biol
, vol.428
, Issue.4
, pp. 679-687
-
-
Harrison, J.S.1
Jacobs, T.M.2
Houlihan, K.3
Van Doorslaer, K.4
Kuhlman, B.5
-
13
-
-
45849131354
-
Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution
-
Lange OF, et al. (2008) Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science 320(5882):1471-1475.
-
(2008)
Science
, vol.320
, Issue.5882
, pp. 1471-1475
-
-
Lange, O.F.1
-
14
-
-
84873085753
-
A strategy for modulation of enzymes in the ubiquitin system
-
Ernst A, et al. (2013) A strategy for modulation of enzymes in the ubiquitin system. Science 339(6119):590-595.
-
(2013)
Science
, vol.339
, Issue.6119
, pp. 590-595
-
-
Ernst, A.1
-
15
-
-
84878306995
-
Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area
-
Chen J, Sawyer N, Regan L (2013) Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area. Prot Sci 22(4):510-515.
-
(2013)
Prot Sci
, vol.22
, Issue.4
, pp. 510-515
-
-
Chen, J.1
Sawyer, N.2
Regan, L.3
-
16
-
-
0030050701
-
Binding in the growth hormone receptor complex
-
Wells JA (1996) Binding in the growth hormone receptor complex. Proc Natl Acad Sci USA 93(1):1-6.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, Issue.1
, pp. 1-6
-
-
Wells, J.A.1
-
17
-
-
33746799726
-
Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning
-
Pál G, Kouadio JL, Artis DR, Kossiakoff AA, Sidhu SS (2006) Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning. J Biol Chem 281(31):22378-22385.
-
(2006)
J Biol Chem
, vol.281
, Issue.31
, pp. 22378-22385
-
-
Pál, G.1
Kouadio, J.L.2
Artis, D.R.3
Kossiakoff, A.A.4
Sidhu, S.S.5
-
18
-
-
0029982521
-
Hematopoietic receptor complexes
-
Wells JA, de Vos AM (1996) Hematopoietic receptor complexes. Annu Rev Biochem 65:609-634.
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 609-634
-
-
Wells, J.A.1
De Vos, A.M.2
-
19
-
-
34548779127
-
Hot spots: A review of the protein-protein interface determinant amino-Acid residues
-
Moreira IS, Fernandes PA, Ramos MJ (2007) Hot spots: A review of the protein-protein interface determinant amino-Acid residues. Proteins 68(4):803-812.
-
(2007)
Proteins
, vol.68
, Issue.4
, pp. 803-812
-
-
Moreira, I.S.1
Fernandes, P.A.2
Ramos, M.J.3
-
20
-
-
84898431842
-
Mapping of the binding landscape for a picomolar protein-protein complex through computation and experiment
-
Aizner Y, et al. (2014) Mapping of the binding landscape for a picomolar protein-protein complex through computation and experiment. Structure 22(4):636-645.
-
(2014)
Structure
, vol.22
, Issue.4
, pp. 636-645
-
-
Aizner, Y.1
-
21
-
-
84874036031
-
Computational methods for controlling binding specificity
-
Sharabi O, Erijman A, Shifman JM (2013) Computational methods for controlling binding specificity. Methods Enzymol 523:41-59.
-
(2013)
Methods Enzymol
, vol.523
, pp. 41-59
-
-
Sharabi, O.1
Erijman, A.2
Shifman, J.M.3
-
22
-
-
58149295169
-
Targeting the ubiquitinproteasome system for cancer therapy
-
Yang Y, Kitagaki J, Wang H, Hou DX, Perantoni AO (2009) Targeting the ubiquitinproteasome system for cancer therapy. Cancer Sci 100(1):24-28.
-
(2009)
Cancer Sci
, vol.100
, Issue.1
, pp. 24-28
-
-
Yang, Y.1
Kitagaki, J.2
Wang, H.3
Hou, D.X.4
Perantoni, A.O.5
-
23
-
-
79956107843
-
Ubiquitin-specific proteases as cancer drug targets
-
Sippl W, Collura V, Colland F (2011) Ubiquitin-specific proteases as cancer drug targets. Future Oncol 7(5):619-632.
-
(2011)
Future Oncol
, vol.7
, Issue.5
, pp. 619-632
-
-
Sippl, W.1
Collura, V.2
Colland, F.3
-
24
-
-
84959285658
-
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes
-
Zhang W, et al. (2016) System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes. Mol Cell 62(1):121-136.
-
(2016)
Mol Cell
, vol.62
, Issue.1
, pp. 121-136
-
-
Zhang, W.1
-
25
-
-
84962110911
-
Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface
-
Gorelik M, et al. (2016) Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface. Proc Natl Acad Sci USA 113(13):3527-3532.
-
(2016)
Proc Natl Acad Sci USA
, vol.113
, Issue.13
, pp. 3527-3532
-
-
Gorelik, M.1
-
26
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
Clackson T, Wells JA (1995) A hot spot of binding energy in a hormone-receptor interface. Science 267(5196):383-386.
-
(1995)
Science
, vol.267
, Issue.5196
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
27
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider TD, Stephens RM (1990) Sequence logos: A new way to display consensus sequences. Nucleic Acids Res 18(20):6097-6100.
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.20
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
28
-
-
33645748095
-
What are DNA sequence motifs?
-
D'haeseleer P (2006) What are DNA sequence motifs? Nat Biotechnol 24(4):423-425.
-
(2006)
Nat Biotechnol
, vol.24
, Issue.4
, pp. 423-425
-
-
D'Haeseleer, P.1
-
29
-
-
67649982744
-
Diversity and complexity in DNA recognition by transcription factors
-
Badis G, et al. (2009) Diversity and complexity in DNA recognition by transcription factors. Science 324(5935):1720-1723.
-
(2009)
Science
, vol.324
, Issue.5935
, pp. 1720-1723
-
-
Badis, G.1
-
30
-
-
84880427394
-
A compendium of RNA-binding motifs for decoding gene regulation
-
Ray D, et al. (2013) A compendium of RNA-binding motifs for decoding gene regulation. Nature 499(7457):172-177.
-
(2013)
Nature
, vol.499
, Issue.7457
, pp. 172-177
-
-
Ray, D.1
-
31
-
-
70350404403
-
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins
-
Tonikian R, et al. (2009) Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol 7(10):e1000218.
-
(2009)
PLoS Biol
, vol.7
, Issue.10
, pp. e1000218
-
-
Tonikian, R.1
-
32
-
-
79955569676
-
The multiple-specificity landscape of modular peptide recognition domains
-
Gfeller D, et al. (2011) The multiple-specificity landscape of modular peptide recognition domains. Mol Syst Biol 7:484.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 484
-
-
Gfeller, D.1
-
33
-
-
84861750821
-
Characterizing the binding motifs of 11 common human HLA-DP and HLA-DQ molecules using NNAlign
-
Andreatta M, Nielsen M (2012) Characterizing the binding motifs of 11 common human HLA-DP and HLA-DQ molecules using NNAlign. Immunology 136(3):306-311.
-
(2012)
Immunology
, vol.136
, Issue.3
, pp. 306-311
-
-
Andreatta, M.1
Nielsen, M.2
-
35
-
-
0037184947
-
Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
-
Hu M, et al. (2002) Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell 111(7):1041-1054.
-
(2002)
Cell
, vol.111
, Issue.7
, pp. 1041-1054
-
-
Hu, M.1
-
36
-
-
84875703570
-
Analyses of the effects of all ubiquitin point mutants on yeast growth rate
-
Roscoe BP, Thayer KM, Zeldovich KB, Fushman D, Bolon DN (2013) Analyses of the effects of all ubiquitin point mutants on yeast growth rate. J Mol Biol 425(8):1363-1377.
-
(2013)
J Mol Biol
, vol.425
, Issue.8
, pp. 1363-1377
-
-
Roscoe, B.P.1
Thayer, K.M.2
Zeldovich, K.B.3
Fushman, D.4
Bolon, D.N.5
-
37
-
-
84907486869
-
Emerging potential of therapeutic targeting of ubiquitin-specific proteases in the treatment of cancer
-
Pal A, Young MA, Donato NJ (2014) Emerging potential of therapeutic targeting of ubiquitin-specific proteases in the treatment of cancer. Cancer Res 74(18):4955-4966.
-
(2014)
Cancer Res
, vol.74
, Issue.18
, pp. 4955-4966
-
-
Pal, A.1
Young, M.A.2
Donato, N.J.3
-
38
-
-
68849126660
-
Small-molecule inhibitor of USP7/HAUSP ubiquitin protease stabilizes and activates p53 in cells
-
Colland F, et al. (2009) Small-molecule inhibitor of USP7/HAUSP ubiquitin protease stabilizes and activates p53 in cells. Mol Cancer Ther 8(8):2286-2295.
-
(2009)
Mol Cancer Ther
, vol.8
, Issue.8
, pp. 2286-2295
-
-
Colland, F.1
-
39
-
-
76449094879
-
The therapeutic potential of deubiquitinating enzyme inhibitors
-
Colland F (2010) The therapeutic potential of deubiquitinating enzyme inhibitors. Biochem Soc Trans 38(Pt 1):137-143.
-
(2010)
Biochem Soc Trans
, vol.38
, pp. 137-143
-
-
Colland, F.1
-
40
-
-
84909587217
-
Small-molecule inhibitors of protein-protein interactions: Progressing toward the reality
-
Arkin MR, Tang Y, Wells JA (2014) Small-molecule inhibitors of protein-protein interactions: Progressing toward the reality. Chem Biol 21(9):1102-1114.
-
(2014)
Chem Biol
, vol.21
, Issue.9
, pp. 1102-1114
-
-
Arkin, M.R.1
Tang, Y.2
Wells, J.A.3
-
41
-
-
84899964275
-
Hot spot-based design of small-molecule inhibitors for protein-protein interactions
-
Guo W, Wisniewski JA, Ji H (2014) Hot spot-based design of small-molecule inhibitors for protein-protein interactions. Bioorg Med Chem Lett 24(11):2546-2554.
-
(2014)
Bioorg Med Chem Lett
, vol.24
, Issue.11
, pp. 2546-2554
-
-
Guo, W.1
Wisniewski, J.A.2
Ji, H.3
-
42
-
-
3142781225
-
Small-molecule inhibitors of protein-protein interactions: Progressing towards the dream
-
Arkin MR, Wells JA (2004) Small-molecule inhibitors of protein-protein interactions: progressing towards the dream. Nat Rev Drug Discov 3(4):301-317.
-
(2004)
Nat Rev Drug Discov
, vol.3
, Issue.4
, pp. 301-317
-
-
Arkin, M.R.1
Wells, J.A.2
-
43
-
-
84971517462
-
Dual architectures regulate multiubiquitination and ubiquitin chain elongation for a RING E3
-
Brown NG, et al. (2016) Dual architectures regulate multiubiquitination and ubiquitin chain elongation for a RING E3. Cell 165(6):1440-1453.
-
(2016)
Cell
, vol.165
, Issue.6
, pp. 1440-1453
-
-
Brown, N.G.1
-
44
-
-
2642699794
-
Rapid and efficient site-specific mutagenesis without phenotypic selection
-
Kunkel TA (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci USA 82(2):488-492.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, Issue.2
, pp. 488-492
-
-
Kunkel, T.A.1
-
46
-
-
17144404243
-
A structure-based database of antibody variable domain diversity
-
Bond CJ, Wiesmann C, Marsters JC, Jr, Sidhu SS (2005) A structure-based database of antibody variable domain diversity. J Mol Biol 348(3):699-709.
-
(2005)
J Mol Biol
, vol.348
, Issue.3
, pp. 699-709
-
-
Bond, C.J.1
Wiesmann, C.2
Marsters, J.C.3
Sidhu, S.S.4
|