메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Erratum to: BATCH-GE: Batch analysis of Next-Generation Sequencing data for genome editing assessment (Scientific Reports, (2016), 6, 1, (30330), 10.1038/srep30330);BATCH-GE: Batch analysis of Next-Generation Sequencing data for genome editing assessment

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; BIOINFORMATICS; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; GENE DISRUPTION; GENETICS; GENOME; IN VITRO STUDY; INDEL MUTATION; KNOCKOUT GENE; MODEL; NEXT GENERATION SEQUENCING; NONHUMAN; SITE DIRECTED MUTAGENESIS; VELOCITY; ZEBRA FISH; ANIMAL; CRISPR CAS SYSTEM; DNA SEQUENCE; GENE EDITING; HIGH THROUGHPUT SEQUENCING; PROCEDURES; SOFTWARE;

EID: 84979776539     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-018-33869-y     Document Type: Erratum
Times cited : (71)

References (36)
  • 1
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenous human gene correction using designed zinc-finger nucleases
    • Urnov, F. D. et al. Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature 435, 646-651, doi: 10.1038/Nature03556 (2005).
    • (2005) Nature , vol.435 , pp. 646-651
    • Urnov, F.D.1
  • 3
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • doi: ARTN e82
    • Cermak, T. et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res 39, doi: ARTN e82, doi: 10.1093/nar/gkr218 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Cermak, T.1
  • 4
    • 84868342049 scopus 로고    scopus 로고
    • In vivo genome editing using a high-efficiency TALEN system
    • Bedell, V. M. et al. In vivo genome editing using a high-efficiency TALEN system. Nature 491, 114-U133, doi: 10.1038/Nature11537 (2012).
    • (2012) Nature , vol.491 , pp. U114-U133
    • Bedell, V.M.1
  • 5
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. Multiplex Genome Engineering Using CRISPR/Cas Systems. Science 339, 819-823, doi: 10.1126/science.1231143 (2013).
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 6
    • 84865070369 scopus 로고    scopus 로고
    • A programmable Dual-RNA-Guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science 337, 816-821, doi: 10.1126/science.1225829 (2012).
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 7
    • 84873734105 scopus 로고    scopus 로고
    • RNA-Guided human genome engineering via Cas9
    • Mali, P. et al. RNA-Guided Human Genome Engineering via Cas9. Science 339, 823-826, doi: 10.1126/science.1232033 (2013).
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 8
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath, P., Barrangou, R. CRISPR/Cas, the Immune System of Bacteria and Archaea. Science 327, 167-170, doi: 10.1126/science.1179555 (2010).
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 9
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • Terns, M. P., Terns, R. M. CRISPR-based adaptive immune systems. Curr Opin Microbiol 14, 321-327, doi: 10.1016/j. mib.2011.03.005 (2011).
    • (2011) Curr Opin Microbiol , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 10
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft, B., Sternberg, S. H., Doudna, J. A. RNA-guided genetic silencing systems in bacteria and archaea. Nature 482, 331-338, doi: 10.1038/Nature10886 (2012).
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 11
    • 84896717088 scopus 로고    scopus 로고
    • Is Non-Homologous End-Joining really an inherently Error-Prone process?
    • doi: ARTN e1004086
    • Betermier, M., Bertrand, P., Lopez, B. S. Is Non-Homologous End-Joining Really an Inherently Error-Prone Process? Plos Genet 10, 1004086, doi: ARTN e1004086, doi: 10.1371/journal.pgen.1004086 (2014).
    • (2014) Plos Genet , vol.10 , pp. 1004086
    • Betermier, M.1    Bertrand, P.2    Lopez, B.S.3
  • 12
    • 2642570858 scopus 로고    scopus 로고
    • Mechanisms of DNA double strand break repair and chromosome aberration formation
    • Iliakis, G. et al. Mechanisms of DNA double strand break repair and chromosome aberration formation. Cytogenet Genome Res 104, 14-20, doi: 10.1159/000077461 (2004).
    • (2004) Cytogenet Genome Res , vol.104 , pp. 14-20
    • Iliakis, G.1
  • 13
    • 0037244523 scopus 로고    scopus 로고
    • The use of resolvases T4 endonuclease VII and T7 endonuclease i in mutation detection
    • Babon, J. J., McKenzie, M., Cotton, R. G. H. The use of resolvases T4 endonuclease VII and T7 endonuclease I in mutation detection. Mol Biotechnol 23, 73-81, doi: 10.1385/Mb:23:1:73 (2003).
    • (2003) Mol Biotechnol , vol.23 , pp. 73-81
    • Babon, J.J.1    McKenzie, M.2    Cotton, R.G.H.3
  • 14
    • 1842579613 scopus 로고    scopus 로고
    • Mutation detection using Surveyor (TM) nuclease
    • Qiu, P. et al. Mutation detection using Surveyor (TM) nuclease. Biotechniques 36, 702-+ (2004).
    • (2004) Biotechniques , vol.36 , pp. 702
    • Qiu, P.1
  • 15
    • 84924666891 scopus 로고    scopus 로고
    • Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases
    • Vouillot, L., Thelie, A., Pollet, N. Comparison of T7E1 and Surveyor Mismatch Cleavage Assays to Detect Mutations Triggered by Engineered Nucleases. G3-Genes Genom Genet 5, 407-415, doi: 10.1534/g3.114.015834 (2015).
    • (2015) G3-Genes Genom Genet , vol.5 , pp. 407-415
    • Vouillot, L.1    Thelie, A.2    Pollet, N.3
  • 16
    • 84860235697 scopus 로고    scopus 로고
    • A simple, high sensitivity mutation screening using Ampligase mediated T7 endonuclease i and Surveyor nuclease with microfluidic capillary electrophoresis
    • Huang, M. C., Cheong, W. C., Lim, L. S., Li, M. H. A simple, high sensitivity mutation screening using Ampligase mediated T7 endonuclease I and Surveyor nuclease with microfluidic capillary electrophoresis. Electrophoresis 33, 788-796, doi: 10.1002/elps.201100460 (2012).
    • (2012) Electrophoresis , vol.33 , pp. 788-796
    • Huang, M.C.1    Cheong, W.C.2    Lim, L.S.3    Li, M.H.4
  • 17
    • 42149170016 scopus 로고    scopus 로고
    • Development of a simple and highly sensitive mutation screening system by enzyme mismatch cleavage with optimized conditions for standard laboratories
    • Tsuji, T., Niida, Y. Development of a simple and highly sensitive mutation screening system by enzyme mismatch cleavage with optimized conditions for standard laboratories. Electrophoresis 29, 1473-1483, doi: 10.1002/elps.200700729 (2008).
    • (2008) Electrophoresis , vol.29 , pp. 1473-1483
    • Tsuji, T.1    Niida, Y.2
  • 18
    • 85028165246 scopus 로고    scopus 로고
    • Ten years of next-generation sequencing technology
    • van Dijk, E. L., Auger, H., Jaszczyszyn, Y., Thermes, C. Ten years of next-generation sequencing technology. Trends Genet 30, 418-426, doi: 10.1016/j.tig.2014.07.001 (2014).
    • (2014) Trends Genet , vol.30 , pp. 418-426
    • Van Dijk, E.L.1    Auger, H.2    Jaszczyszyn, Y.3    Thermes, C.4
  • 19
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nat Biotechnol 29, 24-26, doi: 10.1038/nbt.1754 (2011).
    • (2011) Nat Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 20
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdottir, H., Robinson, J. T., Mesirov, J. P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14, 178-192, doi: 10.1093/bib/bbs017 (2013).
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 21
    • 84913592416 scopus 로고    scopus 로고
    • Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA)
    • Guell, M., Yang, L. H., Church, G. M. Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA). Bioinformatics 30, 2968-2970, doi: 10.1093/bioinformatics/btu427 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2968-2970
    • Guell, M.1    Yang, L.H.2    Church, G.M.3
  • 22
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent, W. J. et al. The human genome browser at UCSC. Genome research 12, 996-1006, doi: 10.1101/gr.229102 (2002).
    • (2002) Genome Research , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 23
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu, Y. F. et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31, 822-+, doi: 10.1038/nbt.2623 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 822
    • Fu, Y.F.1
  • 24
    • 84884165315 scopus 로고    scopus 로고
    • DNA targeting specificity of RNA-guided Cas9 nucleases
    • Hsu, P. D. et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotechnol 31, 827-+, doi: 10.1038/nbt.2647 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 827
    • Hsu, P.D.1
  • 25
    • 84874617789 scopus 로고    scopus 로고
    • Efficient genome editing in zebrafish using a CRISPR-Cas system
    • Hwang, W. Y. et al. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat Biotechnol 31, 227-229, doi: 10.1038/Nbt.2501 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 227-229
    • Hwang, W.Y.1
  • 26
    • 84902520888 scopus 로고    scopus 로고
    • Efficient and heritable gene targeting in tilapia by CRISPR/Cas9
    • Li, M. H. et al. Efficient and Heritable Gene Targeting in Tilapia by CRISPR/Cas9. Genetics 197, 591-U219, doi: 10.1534/genetics.114.163667 (2014).
    • (2014) Genetics , vol.197 , pp. U591-U619
    • Li, M.H.1
  • 27
    • 84901834420 scopus 로고    scopus 로고
    • Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    • Kim, S., Kim, D., Cho, S. W., Kim, J., Kim, J. S. Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome research 24, 1012-1019, doi: 10.1101/gr.171322.113 (2014).
    • (2014) Genome Research , vol.24 , pp. 1012-1019
    • Kim, S.1    Kim, D.2    Cho, S.W.3    Kim, J.4    Kim, J.S.5
  • 28
    • 84891704542 scopus 로고    scopus 로고
    • Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases
    • Sung, Y. H. et al. Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases. Genome research 24, 125-131, doi: 10.1101/gr.163394.113 (2014).
    • (2014) Genome Research , vol.24 , pp. 125-131
    • Sung, Y.H.1
  • 29
    • 84919343537 scopus 로고    scopus 로고
    • Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system
    • Irion, U., Krauss, J., Nusslein-Volhard, C. Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system. Development 141, 4827-4830, doi: 10.1242/Dev.115584 (2014).
    • (2014) Development , vol.141 , pp. 4827-4830
    • Irion, U.1    Krauss, J.2    Nusslein-Volhard, C.3
  • 30
    • 84888866065 scopus 로고    scopus 로고
    • Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish
    • Hruscha, A. et al. Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish. Development 140, 4982-4987, doi: 10.1242/dev.099085 (2013).
    • (2013) Development , vol.140 , pp. 4982-4987
    • Hruscha, A.1
  • 31
    • 84879949311 scopus 로고    scopus 로고
    • Heritable and precise zebrafish genome editing using a CRISPR-Cas system
    • doi: ARTN e68708
    • Hwang, W. Y. et al. Heritable and Precise Zebrafish Genome Editing Using a CRISPR-Cas System. Plos One 8, e68708, doi: ARTN e68708, doi: 10.1371/journal.pone.0068708 (2013).
    • (2013) Plos One , vol.8 , pp. e68708
    • Hwang, W.Y.1
  • 32
    • 84930611267 scopus 로고    scopus 로고
    • High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9
    • Varshney, G. K. et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research 25, 1030-1042, doi: 10.1101/gr.186379.114 (2015).
    • (2015) Genome Research , vol.25 , pp. 1030-1042
    • Varshney, G.K.1
  • 33
    • 84924546515 scopus 로고    scopus 로고
    • Flexible scalable, and efficient targeted resequencing on a benchtop sequencer for variant detection in clinical practice
    • De Leeneer, K. et al. Flexible, Scalable, and Efficient Targeted Resequencing on a Benchtop Sequencer for Variant Detection in Clinical Practice. Hum Mutat 36, 379-387, doi: 10.1002/humu.22739 (2015).
    • (2015) Hum Mutat , vol.36 , pp. 379-387
    • De Leeneer, K.1
  • 34
    • 84926419085 scopus 로고    scopus 로고
    • CRISPR/Cas9 and TALEN-mediated knock-in approaches in zebrafish
    • Auer, T. O., Del Bene, F. CRISPR/Cas9 and TALEN-mediated knock-in approaches in zebrafish. Methods 69, 142-150, doi: 10.1016/j.ymeth.2014.03.027 (2014).
    • (2014) Methods , vol.69 , pp. 142-150
    • Auer, T.O.1    Del Bene, F.2
  • 35
    • 84929142256 scopus 로고    scopus 로고
    • CRISPRdirect: Software for designing CRISPR/Cas guide RNA with reduced off-target sites
    • Naito, Y., Hino, K., Bono, H., Ui-Tei, K. CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. Bioinformatics 31, 1120-1123, doi: 10.1093/bioinformatics/btu743 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 1120-1123
    • Naito, Y.1    Hino, K.2    Bono, H.3    Ui-Tei, K.4
  • 36
    • 34447314159 scopus 로고    scopus 로고
    • The husbandry of zebrafish (Danio rerio): A review
    • Lawrence, C. The husbandry of zebrafish (Danio rerio): A review. Aquaculture 269, 1-20, doi: 10.1016/j.aquaculture.2007.04.077 (2007).
    • (2007) Aquaculture , vol.269 , pp. 1-20
    • Lawrence, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.