A simple, high sensitivity mutation screening using Ampligase mediated T7 endonuclease I and Surveyor nuclease with microfluidic capillary electrophoresis

Electrophoresis

Volumn 33, Issue 5, 2012, Pages 788-796

  Huang, Mo Chao ^a   Cheong, Wai Chye ^a   Lim, Li Shi ^a   Li, Mo Huang ^a  

^a INSTITUTE OF BIOENGINEERING AND NANOTECHNOLOGY   (Singapore)

Author keywords

Ampligase DNA ligase; Enzyme mismatch cleavage; Mutation screening; Surveyor nuclease; T7 Endonuclease I

Indexed keywords

CAPILLARY ELECTROPHORESIS; DIAGNOSIS; DISEASES; DNA; ENZYMES; GENES; MEDICAL APPLICATIONS; MICROFLUIDICS; POLYMERASE CHAIN REACTION;

AMPLIGASE DNA LIGASE; CLEAVAGE ACTIVITIES; DNA LIGASES; ENZYMATIC CLEAVAGE; ENZYME MISMATCH CLEAVAGE; GENE SYNTHESIS; MUTATION SCREENING; SURVEYOR NUCLEASE; T7 ENDONUCLEASE; T7 ENDONUCLEASE I;

EFFICIENCY;

DEOXYRIBONUCLEASE I; DNA FRAGMENT; EXONUCLEASE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; T7 ENDONUCLEASE 1; UNCLASSIFIED DRUG;

ACCURACY; AGAR GEL ELECTROPHORESIS; ARTICLE; BASE MISPAIRING; CAPILLARY ELECTROPHORESIS; CONTROLLED STUDY; DIAGNOSTIC KIT; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME MODIFICATION; ENZYME STABILITY; GENE DELETION; GENE INSERTION; GENE SYNTHESIS; INCUBATION TIME; INTERMETHOD COMPARISON; MICROFLUIDIC ANALYSIS; MUTATIONAL ANALYSIS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PREDICTION; PROCESS OPTIMIZATION; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84860235697     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201100460     Document Type: Article

References (33)

1. Polymeropoulos, M. H., Lavedan, C., Leroy, E., Ide, S. E., Dehejia, A., Dutra, A., Pike, B., Root, B.H., Rubenstein, J., Boyer, R., Stenroos, E. S., Chandrasekharappa, S., Athanassiadou, A., Papapetropoulos, T., Johnson, W. G., Lazzarini, A. M., Duvoisin, R. C., Science 1997, 276, 2045-2047.
2. Grady, W. M., Markowitz, S. D., Annu. Rev. Genomics Hum. Genet. 2002, 3, 101-128.
3. Paez, J. G., Jänne, P. A., Lee, J. C., Tracy, S., Greulich, H., Gabriel, S., Herman, P., Kaye, F. J., Lindeman, N., Boggon, T. J., Naoki, K., Sasaki, H., Fujii, Y., Eck, M. J., Sellers, W. R., Johnson, B. E., Meyerson, M., Science 2004, 304, 1497-1500.
4. Rajagopalan, H., Bardelli, A., Lengauer, C., Kinzler, K. W., Vogelstein, B., Velculescu, V. E., Nature 2002, 418, 934.
5. Davies, H., Bignell, G. R., Cox, C., Stephens, P., Edkins, S., Clegg, S., Teague, J., Woffendin, H., Garnett, M. J., Bottomley, W., Davis, N., Dicks, E., Ewing, R., Floyd, Y., Gray, K., Hall, S., Hawes, R., Hughes, J., Kosmidou, V., Menzies, A., Mould, C., Parker, A., Stevens, C., Watt, S., Hooper, S., Wilson, R., Jayatilake, H., Gusterson, B. A., Cooper, C., Shipley, J., Hargrave, D., Pritchard-Jones, K., Maitland, N., Chenevix-Trench, G., Riggins, G. J., Bigner, D. D., Palmieri, G., Cossu, A., Flanagan, A., Nicholson, A., Ho, J. W., Leung, S. Y., Yuen, S. T., Weber, B. L., Seigler, H. F., Darrow, T. L., Paterson, H., Marais, R., Marshall, C. J., Wooster, R., Stratton, M. R., Futreal, P. A., Nature 2002, 417, 949-954.
6. Xiao, W., Oefner, P. J., Hum. Mutat. 2001, 17, 439-474.
7. Larsen, L. A., Christiansen, M., Vuust, J., Andersen, P. S., Comb. Chem. High Throughput Screen. 2000, 3, 393-409.
8. Fodde, R., Losekoot, M., Hum. Mutat. 1994, 3, 83-94.
9. Taylor, G. R., Electrophoresis 1999, 20, 1125-1130.
10. Yeung, A. T., Hattangadi, D., Blakesley, L., Nicolas, E., Biotechniques 2005, 38, 749-758.
11. Li, J., Berbeco, R., Distel, R. J., Jänne, P. A., Wang, L., Makrigiorgos, G. M, Nucleic Acids Res. 2007, 35, e84.
12. Cross, M. J., Waters, D. L., Lee, L. S., Henry, R. J., Electrophoresis 2008, 29, 1291-1301.
13. Huang, J., Kirk, B., Favis, R., Soussi, T., Paty, P., Cao, W., Barany, F., Oncogene 2002, 21, 1909-1921.
14. Youil, R., Kemper, B. W., Cotton, R. G., Proc. Natl. Acad. Sci. USA 1995, 92, 87-91.
15. Babon, J. J., McKenzie, M., Cotton, R. G., Electrophoresis 1999, 20, 1162-1170.
16. Youil, R., Kemper, B., Cotton, R. G., Genomics 1996, 32, 431-435.
17. Pincas, H., Pingle, M. R., Huang, J., Lao, K., Paty, P. B., Friedman, A. M., Barany, F., Nucleic Acids Res 2004, 32, e148.
18. Yao, M., Kow, Y. W., J. Biol. Chem. 1994, 269, 31390-31396.
19. Gao, H., Huang, J., Barany, F., Cao, W., Nucleic Acids Res. 2007, 35, e2.
20. Mean, R. J., Pierides, A., Deltas, C. C., Koptides, M., Biotechniques 2004, 36, 758-760.
21. Tsuji, T., Niida, Y., Electrophoresis 2008, 29, 1473-1483.
22. Till, B. J., Burtner, C., Comai, L., Henikoff, S., Nucleic Acids Res. 2004, 32, 2632-2641.
23. Oleykowski, C. A., Bronson Mullins, C. R., Godwin, A. K., Yeung, A. T., Nucleic Acids Res. 1998, 26, 4597-4602.
24. Qiu, P., Shandilya, H., D'Alessio, J. M., O'Connor, K., Durocher, J., Gerard, G. F., Biotechniques 2004, 36, 702-707.
25. Huang, J., Lu, J., Barany, F., Cao, W., Biochemistry 2001, 40, 8738-8748.
26. Fuhrmann, M., Oertel, W., Berthold, P., Hegemann, P., Nucleic Acids Res. 2005, 33, e58.
27. Bang, D., Church, G. M., Nat. Methods 2008, 5, 37-39.
28. Cheong, W. C., Lim, L. S., Huang, M. C., Bode, M., Li, M.-H., Anal. Biochem. 2010, 406, 51-60.
29. Vogiatzakis, N., Kekou, K., Sophocleous, C., Kitsiou, S., Mavrou, A., Bakoula, C., Kanavakis, E., Mol. Biotechnol. 2007, 37, 212-219.
30. Voskarides, K., Deltas, C., J. Mol. Diagn. 2009, 11, 311-318.
31. Won, B. Y., Shin, S. C., Chung, W.-Y., Shin, S., Cho, D.-Y., Park, H.G., Chem. Commun. 2009, 4230-4232.
32. Behrensdorf, H. A., Pignot, M., Windhab, N., Kappel, A., Nucleic Acids Res. 2002, 30, e64.
33. Huang, M. C., Ye, H., Kuan, Y. K., Li, M.-H., Ying, J. Y., Lab Chip 2009, 9, 276-285.