The use of resolvases T4 endonuclease VII and T7 endonuclease I in mutation detection

Applied Biochemistry and Biotechnology - Part B Molecular Biotechnology

Volumn 23, Issue 1, 2003, Pages 73-81

  Babon, J J ^a   McKenzie, M ^b   Cotton, R G H ^b  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^b ST VINCENT S HOSPITAL   (Australia)

Author keywords

Fluorescent; Hetero duplex; Mismatch; Mutation; Mutation detection; Polymorphism; Resolvase

Indexed keywords

ENDONUCLEASE; RESOLVASE;

ANALYTIC METHOD; BACTERIUM DETECTION; COMPLEX FORMATION; DNA SEQUENCE; ELECTROPHORESIS; ENZYME ACTIVITY; GENE MUTATION; GENETIC POLYMORPHISM; MISMATCH NEGATIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; RELIABILITY; REVIEW;

ALGORITHMS; BASE PAIR MISMATCH; DEOXYRIBONUCLEASE I; DNA; DNA MUTATIONAL ANALYSIS; ENDODEOXYRIBONUCLEASES; MUTATION; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS);

EID: 0037244523     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1385/MB:23:1:73     Document Type: Review

References (23)

1. Youil, R., Kemper, B. W., and Cotton, R. G. H. (1993) Screening for mutations by enzyme mismatch cleavage using T4 endonuclease VII. Am. J. Hum. Genet. 53, abstract 1257.
2. Cotton, R. G. H., Rodrigues, N. R., and Campbell, R. D. (1988) Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations. Proc. Natl. Acad. Sci. 85, 4397-4401.
3. Mashal, R. D., Koontz, J., and Sklar, J. (1996) Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases. Nat. Genet. 23, 177-183.
4. Solaro, P. C., Birkenkamp, K., Pfeiffer, P., and Kemper, B. (1993) Endonuclease VII of phage T4 triggers mismatch correction in vitro. J. Mol. Biol. 230, 868-877.
5. Kleff, S. and Kemper, B. (1988) Initiation of hetero-duplex-loop repair by T4-encoded endonuclease VII in vitro. Embo J. 7, 1527-1535.
6. Kemper, B. and Garabett, M. (1981) Studies on T4-Head maturation. Eur. J. Biochem. 115, 123-131.
7. Dickie, P., McFadden, G., and Morgan, A. R. (1987) The site-specific cleavage of synthetic Holliday junction analogues and related branched DNA structures by bacteriophage T7 endonuclease 1. J. Biol. Chem. 262, 14,826-14,836.
8. Kemper, B., Pottmeyer, S., Solaro, P., and Kosak, H. (1990) Resolution of DNA-secondary structures by endonuclease VII (endo VII) from phage T4. In Human Gehome Initiative and DNA Recombination, vol. 1, Structure and Methods, Adenine Press, Schenectady, New York.
9. Bhattacharyya, A., Murchie, A. I. H., von Kitzing, E., Dieckmann, S., Kemper, B., and Lilley, D. M. J. (1991) Model for the interaction of DNA junctions and resolving enzymes. J. Mol. Biol. 221, 1191-1207.
10. Parsons, C. A., Kemper, B., and West, S. C. (1990) Interaction of a four-way junction in DNA with T4 endonuclease VII. J. Biol. Chem. 265, 9285-9289.
11. de Massey, B., Studier, F. W., Dorgai, I., Appelbaum, E., and Weisberg, R. A. (1985) Resolution of Holliday Structures by Endonuclease VII as observed in interactions with cruciform DNA. Cold Spring Harbour Symp. Quant. Biol. 49, 715-726.
12. Modrich, P. (1991) Mechanisms and biological effects of mismatch repair. Ann. Rev. Genet. 25, 229-253.
13. Youil, R., Kemper, B., and Cotton, R. G. H. (1996) Detection of 81 of 81 known mouse b-globin promoter mutations with T4 endonuclease VII-the EMC method. Genomics 32, 431-435.
14. rd, Novotny, M. A., et al. (1998) Automated fluorescent analysis procedure for enzymatic mutation detection. Clin. Chem. 44, 731-739.
15. Youil, R. and Cotton, R. G. H. (1996) EMC-Enzyme Mismatch Cleavage, Chapter 13 In Laboratory Protocols for Mutation Detection. Oxford University Press, Walton Street, Oxford OX2 6DP, UK.
16. Schmalzing, D., Belenky, A., Novotny, M. A., et al. (2000) Microchip electrophoresis: a method for high-speed SNP detection. Nucleic Acids Res 28, E43.
17. Ford, M. E. and Whitcombe, D. C. (1999) Analysis of the hereditary pancreatitis-associated cationic trypsinogen gene mutations in exons 2 and 3 by enzymatic mutation detection from a single 2.2-kb polymerase chain reaction product. Mol. Diagn. 4, 211-218.
18. Marianna, G., Yakubovskaya, A., Neschastnova, A., et al. (2001) Interaction of linear homologous DNA duplexes via Holliday junction formation. Eur. J. Biochem. 267, 7-14.
19. Biasotto, M., Meo, T., Tosi, M., and Verpy, E. (1996) FAMA fluorescence-assisted mismatch analysis by chemical cleavage, Chapter 11, In Laboratory Protocols for Mutation Detection. Oxford University Press, Walton Street, Oxford OX2 6DP, UK.
20. Babon, J. J., Youil, R., and Cotton, R. G. H. (1995) Improved strategy for mutation detection-A modification to the enzyme mismatch cleavage method. Nucleic Acids Res. 23, 5082-5084.
21. Youil, R., Toner, T. J., Bell, E., et al. (2000) Enzymatic mutation detection (EMD) of novel mutations (R565X and R1523X) in the FBN1 gene of patients with Marfan syndrome using T4 endonuclease VII. Hum. Mutat. 16, 92,93.
22. Otway, R., Tetlow, N., Hornby, J., and Kohonen-Corish, M. (2000) Evaluation of enzymatic mutation detection in hereditary nonpolyposis colorectal cancer. Hum. Mutat. 16, 61-67.
23. Inganas, M., Byding, S., Eckersten, A., et al. (2000) Enzymatic mutation detection in the p53 gene. Clin. Chem. 46, 1562-1573.