-
1
-
-
84921283583
-
BREX is a novel phage resistance system widespread in microbial genomes
-
Goldfarb, T., Sberro, H., Weinstock, E., Cohen, O., Doron, S., Charpak-Amikam, Y., Afik, S., Ofir, G. and Sorek, R. (2015) BREX is a novel phage resistance system widespread in microbial genomes. EMBO J., 34, 169-183.
-
(2015)
EMBO J.
, vol.34
, pp. 169-183
-
-
Goldfarb, T.1
Sberro, H.2
Weinstock, E.3
Cohen, O.4
Doron, S.5
Charpak-Amikam, Y.6
Afik, S.7
Ofir, G.8
Sorek, R.9
-
2
-
-
78650045540
-
The phage-host arms race: Shaping the evolution of microbes
-
Stern, A. and Sorek, R. (2011) The phage-host arms race: shaping the evolution of microbes. Bioessays, 33, 43-51.
-
(2011)
Bioessays
, vol.33
, pp. 43-51
-
-
Stern, A.1
Sorek, R.2
-
3
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath, P. and Barrangou, R. (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science, 327, 167-170.
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
4
-
-
84870180587
-
The CRISPRs, they are a-changin': How prokaryotes generate adaptive immunity
-
Westra, E.R., Swarts, D.C., Staals, R.H., Jore, M.M., Brouns, S.J. and van der Oost, J. (2012) The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu. Rev. Genet., 46, 311-339.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 311-339
-
-
Westra, E.R.1
Swarts, D.C.2
Staals, R.H.3
Jore, M.M.4
Brouns, S.J.5
Van Der-Oost, J.6
-
5
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D.A. and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science, 315, 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
6
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S.J., Jore, M.M., Lundgren, M., Westra, E.R., Slijkhuis, R.J., Snijders, A.P., Dickman, M.J., Makarova, K.S., Koonin, E.V. and Van Der Oost, J. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science, 321, 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der-Oost, J.10
-
7
-
-
15844390228
-
CRISPR elements in yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel, C., Salvignol, G. and Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology, 151, 653-663.
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
8
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica, F.J., García-Martínez, J. and Soria, E. (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol., 60, 174-182.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
García-Martínez, J.2
Soria, E.3
-
10
-
-
79956157571
-
Evolution and classification of the CRISPR-cas systems
-
Makarova, K.S., Haft, D.H., Barrangou, R., Brouns, S.J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F.J., Wolf, Y.I. and Yakunin, A.F. (2011) Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol., 9, 467-477.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
-
11
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft, D.H., Selengut, J., Mongodin, E.F. and Nelson, K.E. (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol., 1, e60.
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. e60
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
12
-
-
84879021475
-
High-throughput analysis of type IE CRISPR/Cas spacer acquisition in E. Coli
-
Savitskaya, E., Semenova, E., Dedkov, V., Metlitskaya, A. and Severinov, K. (2013) High-throughput analysis of type IE CRISPR/Cas spacer acquisition in E. coli. RNA Biol., 10, 716-725.
-
(2013)
RNA Biol.
, vol.10
, pp. 716-725
-
-
Savitskaya, E.1
Semenova, E.2
Dedkov, V.3
Metlitskaya, A.4
Severinov, K.5
-
13
-
-
84924664059
-
Integrase-mediated spacer acquisition during CRISPR-cas adaptive immunity
-
Nuñez, J.K., Lee, A.S., Engelman, A. and Doudna, J.A. (2015) Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity. Nature, 519, 193-198.
-
(2015)
Nature
, vol.519
, pp. 193-198
-
-
Nuñez, J.K.1
Lee, A.S.2
Engelman, A.3
Doudna, J.A.4
-
14
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
Mojica, F., Diez-Villasenor, C., Garcia-Martinez, J. and Almendros, C. (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology, 155, 733-740.
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Almendros, C.4
-
15
-
-
79958848350
-
Recognition and maturation of effector RNAs in a CRISPR interference pathway
-
Gesner, E.M., Schellenberg, M.J., Garside, E.L., George, M.M. and MacMillan, A.M. (2011) Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat. Struct. Mol. Biol., 18, 688-692.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 688-692
-
-
Gesner, E.M.1
Schellenberg, M.J.2
Garside, E.L.3
George, M.M.4
MacMillan, A.M.5
-
16
-
-
84868111481
-
Characterization of CRISPR RNA processing in clostridium thermocellum and methanococcus maripaludis
-
Richter, H., Zoephel, J., Schermuly, J., Maticzka, D., Backofen, R. and Randau, L. (2012) Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis. Nucleic Acids Res., 40, 9887-9896.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9887-9896
-
-
Richter, H.1
Zoephel, J.2
Schermuly, J.3
Maticzka, D.4
Backofen, R.5
Randau, L.6
-
17
-
-
79955574254
-
Structural basis for CRISPR RNA-guided DNA recognition by cascade
-
Jore, M.M., Lundgren, M., van Duijn, E., Bultema, J.B., Westra, E.R., Waghmare, S.P., Wiedenheft, B., Pul, Ü., Wurm, R. and Wagner, R. (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat. Struct. Mol. Biol., 18, 529-536.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 529-536
-
-
Jore, M.M.1
Lundgren, M.2
Van Duijn, E.3
Bultema, J.B.4
Westra, E.R.5
Waghmare, S.P.6
Wiedenheft, B.7
Pul, Ü.8
Wurm, R.9
Wagner, R.10
-
18
-
-
77956498326
-
Sequence- and structure-specific RNA processing by a CRISPR endonuclease
-
Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K. and Doudna, J.A. (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science, 329, 1355-1358.
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
19
-
-
78149355930
-
Binding and cleavage of CRISPR RNA by cas6
-
Carte, J., Pfister, N.T., Compton, M.M., Terns, R.M. and Terns, M.P. (2010) Binding and cleavage of CRISPR RNA by Cas6. RNA, 16, 2181-2188.
-
(2010)
RNA
, vol.16
, pp. 2181-2188
-
-
Carte, J.1
Pfister, N.T.2
Compton, M.M.3
Terns, R.M.4
Terns, M.P.5
-
20
-
-
84885336337
-
Structure of the CRISPR interference complex CSM reveals key similarities with cascade
-
Rouillon, C., Zhou, M., Zhang, J., Politis, A., Beilsten-Edmands, V., Cannone, G., Graham, S., Robinson, C.V., Spagnolo, L. and White, M.F. (2013) Structure of the CRISPR interference complex CSM reveals key similarities with cascade. Mol. Cell, 52, 124-134.
-
(2013)
Mol. Cell
, vol.52
, pp. 124-134
-
-
Rouillon, C.1
Zhou, M.2
Zhang, J.3
Politis, A.4
Beilsten-Edmands, V.5
Cannone, G.6
Graham, S.7
Robinson, C.V.8
Spagnolo, L.9
White, M.F.10
-
21
-
-
84902533278
-
Unravelling the structural and mechanistic basis of CRISPR-cas systems
-
van der Oost, J., Westra, E.R., Jackson, R.N. and Wiedenheft, B. (2014) Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat. Rev. Microbiol., 12, 479-492.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 479-492
-
-
Van Der-Oost, J.1
Westra, E.R.2
Jackson, R.N.3
Wiedenheft, B.4
-
22
-
-
84899810698
-
In vitro assembly and activity of an archaeal CRISPR-cas type IA cascade interference complex
-
Plagens, A., Tripp, V., Daume, M., Sharma, K., Klingl, A., Hrle, A., Conti, E., Urlaub, H. and Randau, L. (2014) In vitro assembly and activity of an archaeal CRISPR-Cas type IA Cascade interference complex. Nucleic Acids Res., 42, 5125-5138.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 5125-5138
-
-
Plagens, A.1
Tripp, V.2
Daume, M.3
Sharma, K.4
Klingl, A.5
Hrle, A.6
Conti, E.7
Urlaub, H.8
Randau, L.9
-
23
-
-
84907204893
-
Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target
-
Mulepati, S., Héroux, A. and Bailey, S. (2014) Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target. Science, 345, 1479-1484.
-
(2014)
Science
, vol.345
, pp. 1479-1484
-
-
Mulepati, S.1
Héroux, A.2
Bailey, S.3
-
24
-
-
84907208955
-
Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli
-
Jackson, R.N., Golden, S.M., van Erp, P.B., Carter, J., Westra, E.R., Brouns, S.J., van der Oost, J., Terwilliger, T.C., Read, R.J. and Wiedenheft, B. (2014) Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli. Science, 345, 1473-1479.
-
(2014)
Science
, vol.345
, pp. 1473-1479
-
-
Jackson, R.N.1
Golden, S.M.2
Van Erp, P.B.3
Carter, J.4
Westra, E.R.5
Brouns, S.J.6
Van Der-Oost, J.7
Terwilliger, T.C.8
Read, R.J.9
Wiedenheft, B.10
-
25
-
-
84879011562
-
Essential requirements for the detection and degradation of invaders by the haloferax volcanii CRISPR/Cas system IB
-
Maier, L.-K., Lange, S.J., Stoll, B., Haas, K.A., Fischer, S.M., Fischer, E., Duchardt-Ferner, E., Wöhnert, J., Backofen, R. and Marchfelder, A. (2013) Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system IB. RNA Biol., 10, 865-874.
-
(2013)
RNA Biol.
, vol.10
, pp. 865-874
-
-
Maier, L.-K.1
Lange, S.J.2
Stoll, B.3
Haas, K.A.4
Fischer, S.M.5
Fischer, E.6
Duchardt-Ferner, E.7
Wöhnert, J.8
Backofen, R.9
Marchfelder, A.10
-
26
-
-
79960554003
-
Unification of cas protein families and a simple scenario for the origin and evolution of CRISPR-cas systems
-
Makarova, K.S., Aravind, L., Wolf, Y.I. and Koonin, E.V. (2011) Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol. Direct, 6, 38.
-
(2011)
Biol. Direct
, vol.6
, pp. 38
-
-
Makarova, K.S.1
Aravind, L.2
Wolf, Y.I.3
Koonin, E.V.4
-
27
-
-
84902010986
-
Cas1-cas2 complex formation mediates spacer acquisition during CRISPR-cas adaptive immunity
-
Nuñez, J.K., Kranzusch, P.J., Noeske, J., Wright, A.V., Davies, C.W. and Doudna, J.A. (2014) Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity. Nature Struct. Mol. Biol., 21, 528-534.
-
(2014)
Nature Struct. Mol. Biol.
, vol.21
, pp. 528-534
-
-
Nuñez, J.K.1
Kranzusch, P.J.2
Noeske, J.3
Wright, A.V.4
Davies, C.W.5
Doudna, J.A.6
-
28
-
-
84905594146
-
Priming in the type if CRISPR-cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
-
Richter, C., Dy, R.L., McKenzie, R.E., Watson, B.N., Taylor, C., Chang, J.T., McNeil, M.B., Staals, R.H. and Fineran, P.C. (2014) Priming in the Type IF CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer. Nucleic Acids Res., 42, 8516-8526.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 8516-8526
-
-
Richter, C.1
Dy, R.L.2
McKenzie, R.E.3
Watson, B.N.4
Taylor, C.5
Chang, J.T.6
McNeil, M.B.7
Staals, R.H.8
Fineran, P.C.9
-
29
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau, J.E., Dupuis, M.-È., Villion, M., Romero, D.A., Barrangou, R., Boyaval, P., Fremaux, C., Horvath, P., Magadán, A.H. and Moineau, S. (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature, 468, 67-71.
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.-È.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
Boyaval, P.6
Fremaux, C.7
Horvath, P.8
Magadán, A.H.9
Moineau, S.10
-
30
-
-
84893157352
-
Structures of cas9 endonucleases reveal RNA-mediated conformational activation
-
Jinek, M., Jiang, F., Taylor, D.W., Sternberg, S.H., Kaya, E., Ma, E., Anders, C., Hauer, M., Zhou, K. and Lin, S. (2014) Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science, 343, 1247997.
-
(2014)
Science
, vol.343
, pp. 1247997
-
-
Jinek, M.1
Jiang, F.2
Taylor, D.W.3
Sternberg, S.H.4
Kaya, E.5
Ma, E.6
Anders, C.7
Hauer, M.8
Zhou, K.9
Lin, S.10
-
31
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A. and Charpentier, E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
32
-
-
84878211288
-
The tracrRNA and cas9 families of type II CRISPR-cas immunity systems
-
Chylinski, K., Le Rhun, A. and Charpentier, E. (2013) The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems. RNA Biol., 10, 726-737.
-
(2013)
RNA Biol.
, vol.10
, pp. 726-737
-
-
Chylinski, K.1
Le Rhun, A.2
Charpentier, E.3
-
33
-
-
84884687531
-
Type IE CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition
-
Westra, E.R., Semenova, E., Datsenko, K.A., Jackson, R.N., Wiedenheft, B., Severinov, K. and Brouns, S.J. (2013) Type IE CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition. PLoS Genet., 9, e1003742.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003742
-
-
Westra, E.R.1
Semenova, E.2
Datsenko, K.A.3
Jackson, R.N.4
Wiedenheft, B.5
Severinov, K.6
Brouns, S.J.7
-
34
-
-
84908508061
-
Structural basis of PAM-dependent target DNA recognition by the cas9 endonuclease
-
Anders, C., Niewoehner, O., Duerst, A. and Jinek, M. (2014) Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease. Nature, 513, 569-573.
-
(2014)
Nature
, vol.513
, pp. 569-573
-
-
Anders, C.1
Niewoehner, O.2
Duerst, A.3
Jinek, M.4
-
35
-
-
84885334898
-
Structure and activity of the RNA-targeting type III-B CRISPR-cas complex of thermus thermophilus
-
Staals, R.H., Agari, Y., Maki-Yonekura, S., Zhu, Y., Taylor, D.W., van Duijn, E., Barendregt, A., Vlot, M., Koehorst, J.J. and Sakamoto, K. (2013) Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus. Mol. Cell, 52, 135-145.
-
(2013)
Mol. Cell
, vol.52
, pp. 135-145
-
-
Staals, R.H.1
Agari, Y.2
Maki-Yonekura, S.3
Zhu, Y.4
Taylor, D.W.5
Van Duijn, E.6
Barendregt, A.7
Vlot, M.8
Koehorst, J.J.9
Sakamoto, K.10
-
36
-
-
84930085853
-
Co-transcriptional DNA and RNA cleavage during type III CRISPR-cas immunity
-
Samai, P., Pyenson, N., Jiang, W., Goldberg, G.W., Hatoum-Aslan, A. and Marraffini, L.A. (2015) Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity. Cell, 161, 1164-1174.
-
(2015)
Cell
, vol.161
, pp. 1164-1174
-
-
Samai, P.1
Pyenson, N.2
Jiang, W.3
Goldberg, G.W.4
Hatoum-Aslan, A.5
Marraffini, L.A.6
-
37
-
-
79960029056
-
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
-
Wiedenheft, B., van Duijn, E., Bultema, J.B., Waghmare, S.P., Zhou, K., Barendregt, A., Westphal, W., Heck, A.J., Boekema, E.J. and Dickman, M.J. (2011) RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc. Natl. Acad. Sci. U.S.A., 108, 10092-10097.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 10092-10097
-
-
Wiedenheft, B.1
Van Duijn, E.2
Bultema, J.B.3
Waghmare, S.P.4
Zhou, K.5
Barendregt, A.6
Westphal, W.7
Heck, A.J.8
Boekema, E.J.9
Dickman, M.J.10
-
38
-
-
84865704094
-
Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype IC/Dvulg CRISPR-cas system
-
Nam, K.H., Haitjema, C., Liu, X., Ding, F., Wang, H., DeLisa, M.P. and Ke, A. (2012) Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype IC/Dvulg CRISPR-Cas system. Structure, 20, 1574-1584.
-
(2012)
Structure
, vol.20
, pp. 1574-1584
-
-
Nam, K.H.1
Haitjema, C.2
Liu, X.3
Ding, F.4
Wang, H.5
DeLisa, M.P.6
Ke, A.7
-
39
-
-
79958754524
-
Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
-
Lintner, N.G., Kerou, M., Brumfield, S.K., Graham, S., Liu, H., Naismith, J.H., Sdano, M., Peng, N., She, Q. and Copié, V. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J. Biol. Chem., 286, 21643-21656.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 21643-21656
-
-
Lintner, N.G.1
Kerou, M.2
Brumfield, S.K.3
Graham, S.4
Liu, H.5
Naismith, J.H.6
Sdano, M.7
Peng, N.8
She, Q.9
Copié, V.10
-
40
-
-
84861990812
-
Mechanism of foreign DNA selection in a bacterial adaptive immune system
-
Sashital, D.G., Wiedenheft, B. and Doudna, J.A. (2012) Mechanism of foreign DNA selection in a bacterial adaptive immune system. Mol. Cell, 46, 606-615.
-
(2012)
Mol. Cell
, vol.46
, pp. 606-615
-
-
Sashital, D.G.1
Wiedenheft, B.2
Doudna, J.A.3
-
41
-
-
84893230222
-
Evolution of CRISPR RNA recognition and processing by cas6 endonucleases
-
Niewoehner, O., Jinek, M. and Doudna, J.A. (2014) Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases. Nucleic Acids Res., 42, 1341-1353.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1341-1353
-
-
Niewoehner, O.1
Jinek, M.2
Doudna, J.A.3
-
42
-
-
84879584456
-
CRISPR interference: A structural perspective
-
Judith, R., James, H.N. and Malcolm, F.W. (2013) CRISPR interference: a structural perspective. Biochem. J., 453, 155-166.
-
(2013)
Biochem. J.
, vol.453
, pp. 155-166
-
-
Judith, R.1
James, H.N.2
Malcolm, F.W.3
-
43
-
-
84924664059
-
Integrase-mediated spacer acquisition during CRISPR-cas adaptive immunity
-
Nunez, J.K., Lee, A.S., Engelman, A. and Doudna, J.A. (2015) Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity. Nature, 519, 193-198.
-
(2015)
Nature
, vol.519
, pp. 193-198
-
-
Nunez, J.K.1
Lee, A.S.2
Engelman, A.3
Doudna, J.A.4
-
44
-
-
84870688524
-
In vivo protein interactions and complex formation in the pectobacterium atrosepticum subtype if CRISPR/Cas system
-
Richter, C., Gristwood, T., Clulow, J.S. and Fineran, P.C. (2012) In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype IF CRISPR/Cas System. PLoS One, 7, e49549.
-
(2012)
PLoS One
, vol.7
, pp. e49549
-
-
Richter, C.1
Gristwood, T.2
Clulow, J.S.3
Fineran, P.C.4
-
45
-
-
77952253375
-
ArcS, the cognate sensor kinase in an atypical arc system of shewanella oneidensis MR-1
-
Lassak, J., Henche, A.-L., Binnenkade, L. and Thormann, K.M. (2010) ArcS, the cognate sensor kinase in an atypical Arc system of Shewanella oneidensis MR-1. Appl. Environ. Microbiol., 76, 3263-3274.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 3263-3274
-
-
Lassak, J.1
Henche, A.-L.2
Binnenkade, L.3
Thormann, K.M.4
-
46
-
-
82355169822
-
Analysis of the surface proteins of acidithiobacillus ferrooxidans strain SP5/1 and the new, pyrite-oxidizing acidithiobacillus isolate HV2/2, and their possible involvement in pyrite oxidation
-
Klingl, A., Moissl-Eichinger, C., Wanner, G., Zweck, J., Huber, H., Thomm, M. and Rachel, R. (2011) Analysis of the surface proteins of Acidithiobacillus ferrooxidans strain SP5/1 and the new, pyrite-oxidizing Acidithiobacillus isolate HV2/2, and their possible involvement in pyrite oxidation. Arch. Microbiol., 193, 867-882.
-
(2011)
Arch. Microbiol.
, vol.193
, pp. 867-882
-
-
Klingl, A.1
Moissl-Eichinger, C.2
Wanner, G.3
Zweck, J.4
Huber, H.5
Thomm, M.6
Rachel, R.7
-
47
-
-
77957006375
-
Analysis of the ultrastructure of archaea by electron microscopy
-
Rachel, R., Meyer, C., Klingl, A., Gurster, S., Heimerl, T., Wasserburger, N., Burghardt, T., Kuper, U., Bellack, A., Schopf, S. et al. (2010) Analysis of the ultrastructure of archaea by electron microscopy. Methods Cell Biol., 96, 47-69.
-
(2010)
Methods Cell Biol.
, vol.96
, pp. 47-69
-
-
Rachel, R.1
Meyer, C.2
Klingl, A.3
Gurster, S.4
Heimerl, T.5
Wasserburger, N.6
Burghardt, T.7
Kuper, U.8
Bellack, A.9
Schopf, S.10
-
48
-
-
84879014174
-
CRISPRTarget: Bioinformatic prediction and analysis of crRNA targets
-
Biswas, A., Gagnon, J.N., Brouns, S.J., Fineran, P.C. and Brown, C.M. (2013) CRISPRTarget: bioinformatic prediction and analysis of crRNA targets. RNA Biol., 10, 817-827.
-
(2013)
RNA Biol.
, vol.10
, pp. 817-827
-
-
Biswas, A.1
Gagnon, J.N.2
Brouns, S.J.3
Fineran, P.C.4
Brown, C.M.5
-
49
-
-
77949398275
-
Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
-
Pul, Ü., Wurm, R., Arslan, Z., Geißen, R., Hofmann, N. and Wagner, R. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol., 75, 1495-1512.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 1495-1512
-
-
Pul, Ü.1
Wurm, R.2
Arslan, Z.3
Geißen, R.4
Hofmann, N.5
Wagner, R.6
-
50
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe, N.M., Laskowski, R.A. and Thornton, J.M. (2001) Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res., 29, 2860-2874.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
51
-
-
79551694059
-
Interaction of the cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
-
Wang, R., Preamplume, G., Terns, M.P., Terns, R.M. and Li, H. (2011) Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure, 19, 257-264.
-
(2011)
Structure
, vol.19
, pp. 257-264
-
-
Wang, R.1
Preamplume, G.2
Terns, M.P.3
Terns, R.M.4
Li, H.5
-
52
-
-
84896773662
-
A complex of cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in haloferax volcanii
-
Brendel, J., Stoll, B., Lange, S.J., Sharma, K., Lenz, C., Stachler, A.-E., Maier, L.-K., Richter, H., Nickel, L. and Schmitz, R.A. (2014) A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii. J. Biol. Chem., 289, 7164-7177.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 7164-7177
-
-
Brendel, J.1
Stoll, B.2
Lange, S.J.3
Sharma, K.4
Lenz, C.5
Stachler, A.-E.6
Maier, L.-K.7
Richter, H.8
Nickel, L.9
Schmitz, R.A.10
-
53
-
-
77956628107
-
Transcription, processing and function of CRISPR cassettes in Escherichia coli
-
Pougach, K., Semenova, E., Bogdanova, E., Datsenko, K.A., Djordjevic, M., Wanner, B.L. and Severinov, K. (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol. Microbiol., 77, 1367-1379.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1367-1379
-
-
Pougach, K.1
Semenova, E.2
Bogdanova, E.3
Datsenko, K.A.4
Djordjevic, M.5
Wanner, B.L.6
Severinov, K.7
-
54
-
-
79960393323
-
Non-identity-mediated CRISPR-bacteriophage interaction mediated via the csy and cas3 proteins
-
Cady, K.C. and O'Toole, G.A. (2011) Non-identity-mediated CRISPR-bacteriophage interaction mediated via the Csy and Cas3 proteins. J. Bacteriol., 193, 3433-3445.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 3433-3445
-
-
Cady, K.C.1
O'Toole, G.A.2
-
55
-
-
84880213700
-
RNA-seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile methanopyrus kandleri
-
Su, A.A., Tripp, V. and Randau, L. (2013) RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri. Nucleic Acids Res., 41, 6250-6258.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6250-6258
-
-
Su, A.A.1
Tripp, V.2
Randau, L.3
-
56
-
-
84887929636
-
RNA-seq analyses reveal CRISPR RNA processing and regulation patterns
-
Zoephel, J. and Randau, L. (2013) RNA-Seq analyses reveal CRISPR RNA processing and regulation patterns. Biochem. Soc. Trans., 41, 1459-1463.
-
(2013)
Biochem. Soc. Trans.
, vol.41
, pp. 1459-1463
-
-
Zoephel, J.1
Randau, L.2
-
57
-
-
84868143545
-
The CRISPR/Cas adaptive immune system of pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
-
Cady, K.C., Bondy-Denomy, J., Heussler, G.E., Davidson, A.R. and O'Toole, G.A. (2012) The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J. Bacteriol., 194, 5728-5738.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 5728-5738
-
-
Cady, K.C.1
Bondy-Denomy, J.2
Heussler, G.E.3
Davidson, A.R.4
O'Toole, G.A.5
-
58
-
-
84893777866
-
A PNPase dependent CRISPR system in listeria
-
Sesto, N., Touchon, M., Andrade, J.M., Kondo, J., Rocha, E.P., Arraiano, C.M., Archambaud, C., Westhof, É., Romby, P. and Cossart, P. (2014) A PNPase dependent CRISPR system in Listeria. PLoS Genet., 10, e1004065.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004065
-
-
Sesto, N.1
Touchon, M.2
Andrade, J.M.3
Kondo, J.4
Rocha, E.P.5
Arraiano, C.M.6
Archambaud, C.7
Westhof, É.8
Romby, P.9
Cossart, P.10
-
59
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva, E., Chylinski, K., Sharma, C.M., Gonzales, K., Chao, Y., Pirzada, Z.A., Eckert, M.R., Vogel, J. and Charpentier, E. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature, 471, 602-607.
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
Eckert, M.R.7
Vogel, J.8
Charpentier, E.9
-
60
-
-
84899794031
-
CasA mediates cas3-catalyzed target degradation during CRISPR RNA-guided interference
-
Hochstrasser, M.L., Taylor, D.W., Bhat, P., Guegler, C.K., Sternberg, S.H., Nogales, E. and Doudna, J.A. (2014) CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference. Proc. Natl. Acad. Sci. U.S.A., 111, 6618-6623.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 6618-6623
-
-
Hochstrasser, M.L.1
Taylor, D.W.2
Bhat, P.3
Guegler, C.K.4
Sternberg, S.H.5
Nogales, E.6
Doudna, J.A.7
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