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Volumn 10, Issue 1, 2014, Pages

A PNPase Dependent CRISPR System in Listeria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEINS; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS; CRISPR-CAS SYSTEMS; DNA-BINDING PROTEINS; GENOME, BACTERIAL; HUMANS; LISTERIA MONOCYTOGENES; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RNA, UNTRANSLATED; RNA-BINDING PROTEINS;

EID: 84893777866     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004065     Document Type: Article
Times cited : (74)

References (61)
  • 1
    • 83755177932 scopus 로고    scopus 로고
    • Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes
    • Cossart P, (2011) Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes. Proc Natl Acad Sci USA 108: 19484-19491.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 19484-19491
    • Cossart, P.1
  • 2
    • 84860720471 scopus 로고    scopus 로고
    • The non-coding RNA world of the bacterial pathogen Listeria monocytogenes
    • Mellin JR, Cossart P, (2012) The non-coding RNA world of the bacterial pathogen Listeria monocytogenes. RNABiol 9: 372-378.
    • (2012) RNABiol , vol.9 , pp. 372-378
    • Mellin, J.R.1    Cossart, P.2
  • 3
    • 84872491794 scopus 로고    scopus 로고
    • The excludon: a new concept in bacterial antisense RNA-mediated gene regulation
    • Sesto N, Wurtzel O, Archambaud C, Sorek R, Cossart P, (2013) The excludon: a new concept in bacterial antisense RNA-mediated gene regulation. Nat Rev Microbiol 11: 75-82.
    • (2013) Nat Rev Microbiol , vol.11 , pp. 75-82
    • Sesto, N.1    Wurtzel, O.2    Archambaud, C.3    Sorek, R.4    Cossart, P.5
  • 4
    • 67649268395 scopus 로고    scopus 로고
    • The Listeria transcriptional landscape from saprophytism to virulence
    • Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, et al. (2009) The Listeria transcriptional landscape from saprophytism to virulence. Nature 459: 950-956.
    • (2009) Nature , vol.459 , pp. 950-956
    • Toledo-Arana, A.1    Dussurget, O.2    Nikitas, G.3    Sesto, N.4    Guet-Revillet, H.5
  • 5
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by Small RNAs in Bacteria: Expanding Frontiers
    • Storz G, Vogel J, Wassarman KM, (2011) Regulation by Small RNAs in Bacteria: Expanding Frontiers. Mol Cell 43: 880-891.
    • (2011) Mol Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 7
    • 84884738017 scopus 로고    scopus 로고
    • Novel configurations of Type I and II CRISPR/Cas systems in Corynebacterium diphtheriae
    • Sangal V, Fineran PC, Hoskisson PA, (2013) Novel configurations of Type I and II CRISPR/Cas systems in Corynebacterium diphtheriae. Microbiology Epub.
    • (2013) Microbiology
    • Sangal, V.1    Fineran, P.C.2    Hoskisson, P.A.3
  • 8
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD, (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology (Reading, Engl) 151: 2551-2561.
    • (2005) Microbiology (Reading, Engl) , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 9
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, Soria E, (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60: 174-182.
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 10
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel C, Salvignol G, Vergnaud G, (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology (Reading, Engl) 151: 653-663.
    • (2005) Microbiology (Reading, Engl) , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 11
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5
  • 13
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ, (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322: 1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 14
    • 84876440888 scopus 로고    scopus 로고
    • CRISPR-Cas systems and RNA-guided interference
    • Barrangou R, (2013) CRISPR-Cas systems and RNA-guided interference. Wiley interdisciplinary reviews RNA 4: 267-278.
    • (2013) Wiley Interdisciplinary Reviews RNA , vol.4 , pp. 267-278
    • Barrangou, R.1
  • 15
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B, Sternberg SH, Doudna JA, (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482: 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 17
    • 72249094991 scopus 로고    scopus 로고
    • Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site
    • Dorscht J, Klumpp J, Bielmann R, Schmelcher M, Born Y, et al. (2009) Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site. J Bacteriol 191: 7206-7215.
    • (2009) J Bacteriol , vol.191 , pp. 7206-7215
    • Dorscht, J.1    Klumpp, J.2    Bielmann, R.3    Schmelcher, M.4    Born, Y.5
  • 18
    • 84872467231 scopus 로고    scopus 로고
    • Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome
    • Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, et al. (2013) Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14: 47.
    • (2013) BMC Genomics , vol.14 , pp. 47
    • Kuenne, C.1    Billion, A.2    Mraheil, M.A.3    Strittmatter, A.4    Daniel, R.5
  • 20
    • 2442531727 scopus 로고    scopus 로고
    • Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    • Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, et al. (2004) Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res 32: 2386-2395.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2386-2395
    • Nelson, K.E.1    Fouts, D.E.2    Mongodin, E.F.3    Ravel, J.4    DeBoy, R.T.5
  • 21
    • 84862183901 scopus 로고    scopus 로고
    • Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes
    • Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, et al. (2012) Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13: 144.
    • (2012) BMC Genomics , vol.13 , pp. 144
    • Hain, T.1    Ghai, R.2    Billion, A.3    Kuenne, C.T.4    Steinweg, C.5
  • 22
    • 33847371621 scopus 로고    scopus 로고
    • Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
    • Mandin P, Repoila F, Vergassola M, Geissmann T, Cossart P, (2007) Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res 35: 962-974.
    • (2007) Nucleic Acids Res , vol.35 , pp. 962-974
    • Mandin, P.1    Repoila, F.2    Vergassola, M.3    Geissmann, T.4    Cossart, P.5
  • 23
    • 34250729202 scopus 로고    scopus 로고
    • Maturation and degradation of RNA in bacteria
    • Condon C, (2007) Maturation and degradation of RNA in bacteria. Curr Opin Microbiol 10: 271-278.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 271-278
    • Condon, C.1
  • 24
    • 84869216932 scopus 로고    scopus 로고
    • Bacteriophage p70: unique morphology and unrelatedness to other listeria bacteriophages
    • Schmuki MM, Erne D, Loessner MJ, Klumpp J, (2012) Bacteriophage p70: unique morphology and unrelatedness to other listeria bacteriophages. J Virol 86: 13099-13102.
    • (2012) J Virol , vol.86 , pp. 13099-13102
    • Schmuki, M.M.1    Erne, D.2    Loessner, M.J.3    Klumpp, J.4
  • 25
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin V, Sorek R, Hugenholtz P, (2007) Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 8: R61.
    • (2007) Genome Biol , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 26
  • 27
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation
    • Bhaya D, Davison M, Barrangou R, (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 45: 273-297.
    • (2011) Annu Rev Genet , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 28
    • 84857041376 scopus 로고    scopus 로고
    • Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages
    • Bikard D, Marraffini LA, (2012) Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages. Curr Opin Immunol 24: 15-20.
    • (2012) Curr Opin Immunol , vol.24 , pp. 15-20
    • Bikard, D.1    Marraffini, L.A.2
  • 30
    • 84870180587 scopus 로고    scopus 로고
    • The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity
    • Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, et al. (2012) The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 46: 311-339.
    • (2012) Annu Rev Genet , vol.46 , pp. 311-339
    • Westra, E.R.1    Swarts, D.C.2    Staals, R.H.3    Jore, M.M.4    Brouns, S.J.5
  • 31
    • 84870718176 scopus 로고    scopus 로고
    • Memory of viral infections by CRISPR-Cas adaptive immune systems Acquisition of new information
    • Fineran PC, Charpentier E, (2012) Memory of viral infections by CRISPR-Cas adaptive immune systems Acquisition of new information. Virology 434: 202-209.
    • (2012) Virology , vol.434 , pp. 202-209
    • Fineran, P.C.1    Charpentier, E.2
  • 32
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, et al. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471: 602-607.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.M.3    Gonzales, K.4    Chao, Y.5
  • 33
    • 84878193178 scopus 로고    scopus 로고
    • Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis
    • Zhang Y, Heidrich N, Ampattu BJ, Gunderson CW, Seifert HS, et al. (2013) Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis. Mol Cell 50: 488-503.
    • (2013) Mol Cell , vol.50 , pp. 488-503
    • Zhang, Y.1    Heidrich, N.2    Ampattu, B.J.3    Gunderson, C.W.4    Seifert, H.S.5
  • 34
    • 85088333617 scopus 로고    scopus 로고
    • Protection against 3′-to-5′ RNA Decay in Bacillus subtilis
    • Farrr G, Oussenko I, Bechhhofer D, (1999) Protection against 3′-to-5′ RNA Decay in Bacillus subtilis. J Bacteriol 23: 1-9.
    • (1999) J Bacteriol , vol.23 , pp. 1-9
    • Farrr, G.1    Oussenko, I.2    Bechhhofer, D.3
  • 35
    • 84865165883 scopus 로고    scopus 로고
    • RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases
    • Lehnik-Habrink M, Lewis RJ, Mäder U, Stülke J, (2012) RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases. Mol Microbiol 84: 1005-1017.
    • (2012) Mol Microbiol , vol.84 , pp. 1005-1017
    • Lehnik-Habrink, M.1    Lewis, R.J.2    Mäder, U.3    Stülke, J.4
  • 36
    • 67651148194 scopus 로고    scopus 로고
    • Bacillus subtilis polynucleotide phosphorylase 3′-to-5′ DNase activity is involved in DNA repair
    • Cardenas PP, Carrasco B, Sanchez H, Deikus G, Bechhofer DH, et al. (2009) Bacillus subtilis polynucleotide phosphorylase 3′-to-5′ DNase activity is involved in DNA repair. Nucleic Acids Res 37: 4157-4169.
    • (2009) Nucleic Acids Res , vol.37 , pp. 4157-4169
    • Cardenas, P.P.1    Carrasco, B.2    Sanchez, H.3    Deikus, G.4    Bechhofer, D.H.5
  • 37
    • 82255194414 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase exonuclease and polymerase activities on single-stranded DNA ends are modulated by RecN, SsbA and RecA proteins
    • Cardenas PP, Carzaniga T, Zangrossi S, Briani F, Garcia-Tirado E, et al. (2011) Polynucleotide phosphorylase exonuclease and polymerase activities on single-stranded DNA ends are modulated by RecN, SsbA and RecA proteins. Nucleic Acids Res 39: 9250-9261.
    • (2011) Nucleic Acids Res , vol.39 , pp. 9250-9261
    • Cardenas, P.P.1    Carzaniga, T.2    Zangrossi, S.3    Briani, F.4    Garcia-Tirado, E.5
  • 38
    • 84858670765 scopus 로고    scopus 로고
    • The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
    • Andrade JM, Pobre V, Matos AM, Arraiano CM, (2012) The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. RNA 18: 844-855.
    • (2012) RNA , vol.18 , pp. 844-855
    • Andrade, J.M.1    Pobre, V.2    Matos, A.M.3    Arraiano, C.M.4
  • 39
    • 79956225645 scopus 로고    scopus 로고
    • Role of polynucleotide phosphorylase in sRNA function in Escherichia coli
    • De Lay N, Gottesman S, (2011) Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA 17: 1172-1189.
    • (2011) RNA , vol.17 , pp. 1172-1189
    • De Lay, N.1    Gottesman, S.2
  • 40
    • 77957343695 scopus 로고    scopus 로고
    • The extinction dynamics of bacterial pseudogenes
    • Kuo C-H, Ochman H, (2010) The extinction dynamics of bacterial pseudogenes. PLoS Genet 6: e1001050.
    • (2010) PLoS Genet , vol.6
    • Kuo, C.-H.1    Ochman, H.2
  • 41
    • 84860715141 scopus 로고    scopus 로고
    • Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
    • Wurtzel O, Sesto N, Mellin JR, Karunker I, Edelheit S, et al. (2012) Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol Syst Biol 8: 583.
    • (2012) Mol Syst Biol , vol.8 , pp. 583
    • Wurtzel, O.1    Sesto, N.2    Mellin, J.R.3    Karunker, I.4    Edelheit, S.5
  • 42
    • 84874195392 scopus 로고    scopus 로고
    • A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
    • Deng L, Garrett RA, Shah SA, Peng X, She Q, (2013) A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol Microbiol 87: 1088-1099.
    • (2013) Mol Microbiol , vol.87 , pp. 1088-1099
    • Deng, L.1    Garrett, R.A.2    Shah, S.A.3    Peng, X.4    She, Q.5
  • 43
    • 58149479228 scopus 로고    scopus 로고
    • Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa
    • Zegans ME, Wagner JC, Cady KC, Murphy DM, Hammond JH, et al. (2009) Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J Bacteriol 191: 210-219.
    • (2009) J Bacteriol , vol.191 , pp. 210-219
    • Zegans, M.E.1    Wagner, J.C.2    Cady, K.C.3    Murphy, D.M.4    Hammond, J.H.5
  • 44
    • 34248331654 scopus 로고    scopus 로고
    • Regulation of dev, an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats
    • Viswanathan P, Murphy K, Julien B, Garza AG, Kroos L, (2007) Regulation of dev, an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats. J Bacteriol 189: 3738-3750.
    • (2007) J Bacteriol , vol.189 , pp. 3738-3750
    • Viswanathan, P.1    Murphy, K.2    Julien, B.3    Garza, A.G.4    Kroos, L.5
  • 45
    • 84877782955 scopus 로고    scopus 로고
    • A CRISPR/Cas system mediates bacterial innate immune evasion and virulence
    • Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL, Weiss DS, (2013) A CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 497: 254-257.
    • (2013) Nature , vol.497 , pp. 254-257
    • Sampson, T.R.1    Saroj, S.D.2    Llewellyn, A.C.3    Tzeng, Y.L.4    Weiss, D.S.5
  • 46
    • 78651512436 scopus 로고    scopus 로고
    • The good viruses: viral mutualistic symbioses
    • Roossinck MJ, (2011) The good viruses: viral mutualistic symbioses. Nat Rev Microbiol 9: 99-108.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 99-108
    • Roossinck, M.J.1
  • 47
    • 0036843960 scopus 로고    scopus 로고
    • Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved
    • Boyd EF, Brussow H, (2002) Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved. Trends Microbiol 10: 521-529.
    • (2002) Trends Microbiol , vol.10 , pp. 521-529
    • Boyd, E.F.1    Brussow, H.2
  • 48
    • 84865240356 scopus 로고    scopus 로고
    • Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence
    • Rabinovich L, Sigal N, Borovok I, Nir-Paz R, Herskovits AA, (2012) Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence. Cell 150: 792-802.
    • (2012) Cell , vol.150 , pp. 792-802
    • Rabinovich, L.1    Sigal, N.2    Borovok, I.3    Nir-Paz, R.4    Herskovits, A.A.5
  • 49
    • 8744309111 scopus 로고    scopus 로고
    • New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria
    • Arnaud M, Chastanet A, Debarbouille M, (2004) New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria. App Environ Microbiol 70: 6887-6891.
    • (2004) App Environ Microbiol , vol.70 , pp. 6887-6891
    • Arnaud, M.1    Chastanet, A.2    Debarbouille, M.3
  • 50
    • 77953056461 scopus 로고    scopus 로고
    • Single-cell techniques using chromosomally tagged fluorescent bacteria to study Listeria monocytogenes infection processes
    • Balestrino D, Hamon MA, Dortet L, Nahori MA, Pizarro-Cerda J, et al. (2010) Single-cell techniques using chromosomally tagged fluorescent bacteria to study Listeria monocytogenes infection processes. App Environ Microbiol 76: 3625-3636.
    • (2010) App Environ Microbiol , vol.76 , pp. 3625-3636
    • Balestrino, D.1    Hamon, M.A.2    Dortet, L.3    Nahori, M.A.4    Pizarro-Cerda, J.5
  • 51
    • 0036062278 scopus 로고    scopus 로고
    • Construction, characterization, and use of two Listeria monocytogenes site-specific phage integration vectors
    • Lauer P, Chow MY, Loessner MJ, Portnoy DA, Calendar R, (2002) Construction, characterization, and use of two Listeria monocytogenes site-specific phage integration vectors. J Bacteriology 184: 4177-4186.
    • (2002) J Bacteriology , vol.184 , pp. 4177-4186
    • Lauer, P.1    Chow, M.Y.2    Loessner, M.J.3    Portnoy, D.A.4    Calendar, R.5
  • 52
    • 0343742528 scopus 로고    scopus 로고
    • Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron
    • Jestin JL, Dème E, Jacquier A, (1997) Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron. EMBO J 16: 2945-2954.
    • (1997) EMBO J , vol.16 , pp. 2945-2954
    • Jestin, J.L.1    Dème, E.2    Jacquier, A.3
  • 53
    • 76149125466 scopus 로고    scopus 로고
    • In vivo expression and purification of aptamer-tagged small RNA regulators
    • Said N, Rieder R, Hurwitz R, Deckert J, Urlaub H, et al. (2009) In vivo expression and purification of aptamer-tagged small RNA regulators. Nucleic Acids Res 37: e133.
    • (2009) Nucleic Acids Res , vol.37
    • Said, N.1    Rieder, R.2    Hurwitz, R.3    Deckert, J.4    Urlaub, H.5
  • 54
    • 65649135085 scopus 로고    scopus 로고
    • Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II)
    • Chevalier C, Geissmann T, Helfer A-C, Romby P, (2009) Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II). Methods Mol Biol 540: 215-232.
    • (2009) Methods Mol Biol , vol.540 , pp. 215-232
    • Chevalier, C.1    Geissmann, T.2    Helfer, A.-C.3    Romby, P.4
  • 55
    • 84875582587 scopus 로고    scopus 로고
    • The Adaptation of Temperate Bacteriophages to Their Host Genomes
    • Bobay L-M, Rocha EPC, Touchon M, (2013) The Adaptation of Temperate Bacteriophages to Their Host Genomes. Mol Biol Evol 30: 737-757.
    • (2013) Mol Biol Evol , vol.30 , pp. 737-757
    • Bobay, L.-M.1    Rocha, E.P.C.2    Touchon, M.3
  • 56
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated Profile HMM Searches
    • Eddy SR, (2011) Accelerated Profile HMM Searches. PLoS Comput Biol 7: e1002195.
    • (2011) PLoS Comput Biol , vol.7
    • Eddy, S.R.1
  • 57
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
    • (2009) PLoS Genet , vol.5
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3    Barbe, V.4    Baeriswyl, S.5
  • 58
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 59
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A, (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 60
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O, (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14: 685-695.
    • (1997) Mol Biol Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 61
    • 34447644810 scopus 로고    scopus 로고
    • CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
    • Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, et al. (2007) CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics 8: 209.
    • (2007) BMC Bioinformatics , vol.8 , pp. 209
    • Bland, C.1    Ramsey, T.L.2    Sabree, F.3    Lowe, M.4    Brown, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.