메뉴 건너뛰기




Volumn 42, Issue 2, 2014, Pages 1341-1353

Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; PROTEIN CAS6; RNA; UNCLASSIFIED DRUG;

EID: 84893230222     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt922     Document Type: Article
Times cited : (68)

References (44)
  • 1
    • 84857097177 scopus 로고    scopus 로고
    • RNAguided genetic silencing systems in bacteria and archaea
    • Wiedenheft, B., Sternberg, S.H. and Doudna, J.A. (2012) RNAguided genetic silencing systems in bacteria and archaea. Nature, 482, 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 2
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini, L.A. and Sontheimer, E.J. (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat. Rev. Genet., 11, 181-190.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 3
    • 79955435335 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindromic repeats (CRISPRs): The hallmark of an ingenious antiviral defense mechanism in prokaryotes
    • Al-Attar, S., Westra, E.R., van der Oost, J. and Brouns, S.J.J. (2011) Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol. Chem., 392, 277-289.
    • (2011) Biol. Chem. , vol.392 , pp. 277-289
    • Al-Attar, S.1    Westra, E.R.2    Van Der Oost, J.3    Brouns, S.J.J.4
  • 4
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • Terns, M.P. and Terns, R.M. (2011) CRISPR-based adaptive immune systems. Curr. Opin. Microbiol., 14, 321-327.
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 7
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte, J., Wang, R., Li, H., Terns, R.M. and Terns, M.P. (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev., 22, 3489-3496.
    • (2008) Genes Dev. , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 8
    • 77956498326 scopus 로고    scopus 로고
    • Sequence-and structure-specific RNA processing by a CRISPR endonuclease
    • Haurwitz, R.E., Jek, M., Wiedenheft, B., Zhou, K. and Doudna, J.A. (2010) Sequence-and structure-specific RNA processing by a CRISPR endonuclease. Science, 329, 1355-1358.
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 10
    • 79958825675 scopus 로고    scopus 로고
    • An RNAinduced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
    • Sashital, D.G., Jek, M. and Doudna, J.A. (2011) An RNAinduced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3. Nat. Struct. Mol. Biol., 18, 680-687.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 680-687
    • Sashital, D.G.1    Jek, M.2    Doudna, J.A.3
  • 12
    • 33744503676 scopus 로고    scopus 로고
    • Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
    • Ebihara, A., Yao, M., Masui, R., Tanaka, I., Yokoyama, S. and Kuramitsu, S. (2006) Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci., 15, 1494-1499.
    • (2006) Protein Sci. , vol.15 , pp. 1494-1499
    • Ebihara, A.1    Yao, M.2    Masui, R.3    Tanaka, I.4    Yokoyama, S.5    Kuramitsu, S.6
  • 13
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin, V., Sorek, R. and Hugenholtz, P. (2007) Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol., 8, R61.
    • (2007) Genome Biol. , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 14
    • 84858659496 scopus 로고    scopus 로고
    • Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
    • Sternberg, S.H., Haurwitz, R.E. and Doudna, J.A. (2012) Mechanism of substrate selection by a highly specific CRISPR endoribonuclease. RNA, 18, 661-672.
    • (2012) RNA , vol.18 , pp. 661-672
    • Sternberg, S.H.1    Haurwitz, R.E.2    Doudna, J.A.3
  • 15
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
    • Wang, R., Preamplume, G., Terns, M.P., Terns, R.M. and Li, H. (2011) Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure, 19, 257-264.
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 23
    • 16644383329 scopus 로고    scopus 로고
    • Using prime-and-switch phasing to reduce model bias in molecular replacement
    • Terwilliger, T.C. (2004) Using prime-and-switch phasing to reduce model bias in molecular replacement. Acta Crystallogr. D Biol. Crystallogr., 60, 2144-2149.
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.60 , pp. 2144-2149
    • Terwilliger, T.C.1
  • 24
    • 0347383760 scopus 로고    scopus 로고
    • ARP/wARP and automatic interpretation of protein electron density maps
    • Morris, R.J., Perrakis, A. and Lamzin, V.S. (2003) ARP/wARP and automatic interpretation of protein electron density maps. Meth Enzymol., 374, 229-244.
    • (2003) Meth Enzymol. , vol.374 , pp. 229-244
    • Morris, R.J.1    Perrakis, A.2    Lamzin, V.S.3
  • 26
    • 73149087453 scopus 로고    scopus 로고
    • Transcription profile of Thermus thermophilus CRISPR systems after phage infection
    • Agari, Y., Sakamoto, K., Tamakoshi, M., Oshima, T., Kuramitsu, S. and Shinkai, A. (2010) Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J. Mol. Biol., 395, 270-281.
    • (2010) J. Mol. Biol. , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5    Shinkai, A.6
  • 27
    • 84863393352 scopus 로고    scopus 로고
    • A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs
    • Juranek, S., Eban, T., Altuvia, Y., Brown, M., Morozov, P., Tuschl, T. and Margalit, H. (2012) A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs. RNA, 18, 783-794.
    • (2012) RNA , vol.18 , pp. 783-794
    • Juranek, S.1    Eban, T.2    Altuvia, Y.3    Brown, M.4    Morozov, P.5    Tuschl, T.6    Margalit, H.7
  • 28
    • 84863116866 scopus 로고    scopus 로고
    • The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex
    • Wang, R., Zheng, H., Preamplume, G., Shao, Y. and Li, H. (2012) The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex. Protein Sci., 21, 405-417.
    • (2012) Protein Sci. , vol.21 , pp. 405-417
    • Wang, R.1    Zheng, H.2    Preamplume, G.3    Shao, Y.4    Li, H.5
  • 29
    • 84874930818 scopus 로고    scopus 로고
    • Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6
    • Shao, Y. and Li, H. (2013) Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6. Structure, 21, 385-393.
    • (2013) Structure , vol.21 , pp. 385-393
    • Shao, Y.1    Li, H.2
  • 30
    • 84879584456 scopus 로고    scopus 로고
    • CRISPR interference: A structural perspective
    • Reeks, J., Naismith, J.H. and White, M.F. (2013) CRISPR interference: a structural perspective. Biochem. J., 453, 155-166.
    • (2013) Biochem. J. , vol.453 , pp. 155-166
    • Reeks, J.1    Naismith, J.H.2    White, M.F.3
  • 32
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • Makarova, K.S., Aravind, L., Wolf, Y.I. and Koonin, E.V. (2011) Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol. Direct., 6, 38.
    • (2011) Biol. Direct. , vol.6 , pp. 38
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 33
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft, D.H., Selengut, J., Mongodin, E.F. and Nelson, K.E. (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol., 1, e60.
    • (2005) PLoS Comput. Biol. , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 35
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova, K.S., Aravind, L., Grishin, N.V., Rogozin, I.B. and Koonin, E.V. (2002) A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res., 30, 482-496.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 39
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • Lintner, N.G., Kerou, M., Brumfield, S.K., Graham, S., Liu, H., Naismith, J.H., Sdano, M., Peng, N., She, Q., Copie, V. et al. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J. Biol. Chem., 286, 21643-21656.
    • (2011) J. Biol. Chem. , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6    Sdano, M.7    Peng, N.8    She, Q.9    Copie, V.10
  • 40
    • 84862190458 scopus 로고    scopus 로고
    • Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA
    • Haurwitz, R.E., Sternberg, S.H. and Doudna, J.A. (2012) Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA. EMBO J., 31, 2824-2832.
    • (2012) EMBO J. , vol.31 , pp. 2824-2832
    • Haurwitz, R.E.1    Sternberg, S.H.2    Doudna, J.A.3
  • 41
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa, I., Vergnaud, G. and Pourcel, C. (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics, 8, 172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 43
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • Gouet, P., Courcelle, E., Stuart, D.I. and Meoz, F. (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics, 15, 305-308.
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Meoz, F.4
  • 44
    • 0028871926 scopus 로고
    • Dali: A network tool for protein structure comparison
    • Holm, L. and Sander, C. (1995) Dali: a network tool for protein structure comparison. Trends Biochem Sci., 20, 478-480.
    • (1995) Trends Biochem Sci. , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.