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Volumn 20, Issue 9, 2012, Pages 1574-1584

Cas5d protein processes Pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg crispr-cas system

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT ASSOCIATED PROTEIN; FERREDOXIN; PROTEIN CAS5D; PROTEIN DVULG; RIBONUCLEASE; RNA; UNCLASSIFIED DRUG;

EID: 84865704094     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2012.06.016     Document Type: Article
Times cited : (181)

References (41)
  • 3
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • A. Bolotin, B. Quinquis, A. Sorokin, and S.D. Ehrlich Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin Microbiology 151 2005 2551 2561
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 6
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • J. Carte, R. Wang, H. Li, R.M. Terns, and M.P. Terns Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes Genes Dev. 22 2008 3489 3496
    • (2008) Genes Dev. , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 8
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phage-bacteria interactions
    • H. Deveau, J.E. Garneau, and S. Moineau CRISPR/Cas system and its role in phage-bacteria interactions Annu. Rev. Microbiol. 64 2010 475 493
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 475-493
    • Deveau, H.1    Garneau, J.E.2    Moineau, S.3
  • 9
    • 33744503676 scopus 로고    scopus 로고
    • Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
    • A. Ebihara, M. Yao, R. Masui, I. Tanaka, S. Yokoyama, and S. Kuramitsu Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain Protein Sci. 15 2006 1494 1499
    • (2006) Protein Sci. , vol.15 , pp. 1494-1499
    • Ebihara, A.1    Yao, M.2    Masui, R.3    Tanaka, I.4    Yokoyama, S.5    Kuramitsu, S.6
  • 12
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    • L.M. Guzman, D. Belin, M.J. Carson, and J. Beckwith Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter J. Bacteriol. 177 1995 4121 4130
    • (1995) J. Bacteriol. , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 13
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • D.H. Haft, J. Selengut, E.F. Mongodin, and K.E. Nelson A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes PLoS Comput. Biol. 1 2005 e60
    • (2005) PLoS Comput. Biol. , vol.1 , pp. 60
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 15
    • 77956498326 scopus 로고    scopus 로고
    • Sequence- and structure-specific RNA processing by a CRISPR endonuclease
    • R.E. Haurwitz, M. Jinek, B. Wiedenheft, K. Zhou, and J.A. Doudna Sequence- and structure-specific RNA processing by a CRISPR endonuclease Science 329 2010 1355 1358
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 16
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • P. Horvath, and R. Barrangou CRISPR/Cas, the immune system of bacteria and archaea Science 327 2010 167 170
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 18
    • 73649130281 scopus 로고    scopus 로고
    • The CRISPR system: Small RNA-guided defense in bacteria and archaea
    • F.V. Karginov, and G.J. Hannon The CRISPR system: small RNA-guided defense in bacteria and archaea Mol. Cell 37 2010 7 19
    • (2010) Mol. Cell , vol.37 , pp. 7-19
    • Karginov, F.V.1    Hannon, G.J.2
  • 19
    • 4344596976 scopus 로고    scopus 로고
    • Crystallization of RNA and RNA-protein complexes
    • A. Ke, and J.A. Doudna Crystallization of RNA and RNA-protein complexes Methods 34 2004 408 414
    • (2004) Methods , vol.34 , pp. 408-414
    • Ke, A.1    Doudna, J.A.2
  • 20
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • N.G. Lintner, M. Kerou, S.K. Brumfield, S. Graham, H. Liu, J.H. Naismith, M. Sdano, N. Peng, Q. She, and V. Copié Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE) J. Biol. Chem. 286 2011 21643 21656
    • (2011) J. Biol. Chem. , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6    Sdano, M.7    Peng, N.8    She, Q.9    Copié, V.10
  • 21
    • 80355128077 scopus 로고    scopus 로고
    • Single particle electron microscopy reconstruction of the exosome complex using the random conical tilt method
    • X. Liu, and H.W. Wang Single particle electron microscopy reconstruction of the exosome complex using the random conical tilt method J. Vis. Exp. 49 2011 e2574
    • (2011) J. Vis. Exp. , vol.49 , pp. 2574
    • Liu, X.1    Wang, H.W.2
  • 22
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • K.S. Makarova, N.V. Grishin, S.A. Shabalina, Y.I. Wolf, and E.V. Koonin A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action Biol. Direct 1 2006 7
    • (2006) Biol. Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 23
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • K.S. Makarova, L. Aravind, Y.I. Wolf, and E.V. Koonin Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems Biol. Direct 6 2011 38
    • (2011) Biol. Direct , vol.6 , pp. 38
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 25
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • L.A. Marraffini, and E.J. Sontheimer CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea Nat. Rev. Genet. 11 2010 181 190
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 26
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • F.J. Mojica, C. Díez-Villaseñor, J. García- Martínez, and E. Soria Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements J. Mol. Evol. 60 2005 174 182
    • (2005) J. Mol. Evol. , vol.60 , pp. 174-182
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Soria, E.4
  • 27
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • C.W. Carter, R.M. Sweets, University of Virginia Charlottesville
    • Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode C.W. Carter, R.M. Sweets, Methods in Enzymology 1997 University of Virginia Charlottesville 307 326
    • (1997) Methods in Enzymology , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 29
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • C. Pourcel, G. Salvignol, and G. Vergnaud CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies Microbiology 151 2005 653 663
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 30
    • 79958825675 scopus 로고    scopus 로고
    • An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
    • D.G. Sashital, M. Jinek, and J.A. Doudna An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3 Nat. Struct. Mol. Biol. 18 2011 680 687
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 680-687
    • Sashital, D.G.1    Jinek, M.2    Doudna, J.A.3
  • 31
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR - A widespread system that provides acquired resistance against phages in bacteria and archaea
    • R. Sorek, V. Kunin, and P. Hugenholtz CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea Nat. Rev. Microbiol. 6 2008 181 186
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 36
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
    • R. Wang, G. Preamplume, M.P. Terns, R.M. Terns, and H. Li Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage Structure 19 2011 257 264
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 37
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • L.S. Waters, and G. Storz Regulatory RNAs in bacteria Cell 136 2009 615 628
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 38
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • B. Wiedenheft, S.H. Sternberg, and J.A. Doudna RNA-guided genetic silencing systems in bacteria and archaea Nature 482 2012 331 338
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 40
    • 0013461295 scopus 로고    scopus 로고
    • Macromolecular TLS refinement in REFMAC at moderate resolutions
    • M.D. Winn, G.N. Murshudov, and M.Z. Papiz Macromolecular TLS refinement in REFMAC at moderate resolutions Methods Enzymol. 374 2003 300 321
    • (2003) Methods Enzymol. , vol.374 , pp. 300-321
    • Winn, M.D.1    Murshudov, G.N.2    Papiz, M.Z.3
  • 41
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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