-
1
-
-
1542344435
-
Proteasomes and their kin: Pro-teases in the machine age
-
Pickart, C. M., and Cohen, R. E. (2004) Proteasomes and their kin: pro-teases in the machine age. Nat. Rev. Mol. Cell Biol. 5, 177-187
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 177-187
-
-
Pickart, C.M.1
Cohen, R.E.2
-
2
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conju-gates by the proteasome
-
Finley, D. (2009) Recognition and processing of ubiquitin-protein conju-gates by the proteasome. Annu. Rev. Biochem. 78, 477-513
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
3
-
-
84952639230
-
Gates, Channels, and Switch-es: Elements of the Proteasome Machine
-
Finley, D., Chen, X., and Walters, K. J. (2015) Gates, Channels, and Switch-es: Elements of the Proteasome Machine. Trends Biochem Sci. 41, 77-93
-
(2015)
Trends Biochem Sci.
, vol.41
, pp. 77-93
-
-
Finley, D.1
Chen, X.2
Walters, K.J.3
-
4
-
-
0029042511
-
Crystal structure of the 20S proteasome from the archaeon T. Acidophilum at 3.4 Å resolution
-
Lö we, J., Stock, D., Jap, B., Zwickl, P., Baumeister, W., and Huber, R. (1995) Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 Å resolution. Science 268, 533-539
-
(1995)
Science
, vol.268
, pp. 533-539
-
-
Löwe, J.1
Stock, D.2
Jap, B.3
Zwickl, P.4
Baumeister, W.5
Huber, R.6
-
5
-
-
0030897031
-
Structure of 20S proteasome from yeast at 2.4 A resolution
-
Groll, M., Ditzel, L., Lö we, J., Stock, D., Bochtler, M., Bartunik, H. D., and Huber, R. (1997) Structure of 20S proteasome from yeast at 2.4 A resolution. Nature 386, 463-471
-
(1997)
Nature
, vol.386
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Löwe, J.3
Stock, D.4
Bochtler, M.5
Bartunik, H.D.6
Huber, R.7
-
6
-
-
0031815994
-
The regulatory particle of the Saccharomyces cerevisiae proteasome
-
Glickman, M. H., Rubin, D. M., Fried, V. A., and Finley, D. (1998) The regulatory particle of the Saccharomyces cerevisiae proteasome. Mol. Cell. Biol. 18, 3149-3162
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 3149-3162
-
-
Glickman, M.H.1
Rubin, D.M.2
Fried, V.A.3
Finley, D.4
-
7
-
-
26844433577
-
Proteasome-associated proteins: Regulation of a proteolytic machine
-
Schmidt, M., Hanna, J., Elsasser, S., and Finley, D. (2005) Proteasome-associated proteins: regulation of a proteolytic machine. Biol. Chem. 386, 725-737
-
(2005)
Biol. Chem.
, vol.386
, pp. 725-737
-
-
Schmidt, M.1
Hanna, J.2
Elsasser, S.3
Finley, D.4
-
8
-
-
84890203542
-
Regulation of proteasome activity in health and disease
-
Schmidt, M., and Finley, D. (2014) Regulation of proteasome activity in health and disease. Biochim. Biophys. Acta 1843, 13-25
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 13-25
-
-
Schmidt, M.1
Finley, D.2
-
9
-
-
84866269021
-
Near-atomic resolution structural model of the yeast 26S proteasome
-
Beck, F., Unverdorben, P., Bohn, S., Schweitzer, A., Pfeifer, G., Sakata, E., Nickell, S., Plitzko, J.M., Villa, E., Baumeister, W., and Forster, F. (2012) Near-atomic resolution structural model of the yeast 26S proteasome. Proc. Natl. Acad. Sci. USA 109, 14870-14875
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14870-14875
-
-
Beck, F.1
Unverdorben, P.2
Bohn, S.3
Schweitzer, A.4
Pfeifer, G.5
Sakata, E.6
Nickell, S.7
Plitzko, J.M.8
Villa, E.9
Baumeister, W.10
Forster, F.11
-
10
-
-
84856976866
-
Complete subunit architecture of the proteasome regulatory particle
-
Lander, G. C., Estrin, E., Matyskiela, M. E., Bashore, C., Nogales, E., and Martin, A. (2012) Complete subunit architecture of the proteasome regulatory particle. Nature 482, 186-191
-
(2012)
Nature
, vol.482
, pp. 186-191
-
-
Lander, G.C.1
Estrin, E.2
Matyskiela, M.E.3
Bashore, C.4
Nogales, E.5
Martin, A.6
-
11
-
-
84857134729
-
Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach
-
Lasker, K., Forster, F., Bohn, S., Walzthoeni, T., Villa, E., Unverdorben, P., Beck, F., Aebersold, R., Sali, A., and Baumeister, W. (2012) Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach. Proc. Natl. Acad. Sci. USA 109, 1380-1387
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 1380-1387
-
-
Lasker, K.1
Forster, F.2
Bohn, S.3
Walzthoeni, T.4
Villa, E.5
Unverdorben, P.6
Beck, F.7
Aebersold, R.8
Sali, A.9
Baumeister, W.10
-
12
-
-
0038362292
-
When ubiquitin meets ubiquitin receptors: A signalling connection
-
Di Fiore, P. P., Polo, S., and Hofmann, K. (2003) When ubiquitin meets ubiquitin receptors: a signalling connection. Nat. Rev. Mol. Cell Biol. 4, 491-497
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 491-497
-
-
Di Fiore, P.P.1
Polo, S.2
Hofmann, K.3
-
13
-
-
0029806477
-
The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccha-romyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover
-
van Nocker, S., Sadis, S., Rubin, D. M., Glickman, M., Fu, H., Coux, O., Wefes, I., Finley, D., and Vierstra, R. D. (1996) The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccha-romyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol. Cell Biol. 16, 6020-6028
-
(1996)
Mol. Cell Biol.
, vol.16
, pp. 6020-6028
-
-
Van Nocker, S.1
Sadis, S.2
Rubin, D.M.3
Glickman, M.4
Fu, H.5
Coux, O.6
Wefes, I.7
Finley, D.8
Vierstra, R.D.9
-
14
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
Husnjak, K., Elsasser, S., Zhang, N., Chen, X., Randles, L., Shi, Y., Hofmann, K., Walters, K. J., Finley, D., and Dikic, I. (2008) Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature 453, 481-488
-
(2008)
Nature
, vol.453
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
Hofmann, K.7
Walters, K.J.8
Finley, D.9
Dikic, I.10
-
15
-
-
84898631587
-
The ubiquilin gene family: Evolutionary patterns and func-tional insights
-
Marin, I. (2014) The ubiquilin gene family: evolutionary patterns and func-tional insights. BMC Evol. Biol. 14, 63
-
(2014)
BMC Evol. Biol.
, vol.14
, pp. 63
-
-
Marin, I.1
-
16
-
-
23144449583
-
Delivery of ubiquitinated substrates to protein-unfolding machines
-
Elsasser, S., and Finley, D. (2005) Delivery of ubiquitinated substrates to protein-unfolding machines. Nat. Cell Biol. 7, 742-749
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 742-749
-
-
Elsasser, S.1
Finley, D.2
-
17
-
-
33744552664
-
Evidence for distinct functions for human DNA repair factors hHR23A and hHR23B
-
Chen, L., and Madura, K. (2006) Evidence for distinct functions for human DNA repair factors hHR23A and hHR23B. FEBS Lett. 580, 3401-3408
-
(2006)
FEBS Lett.
, vol.580
, pp. 3401-3408
-
-
Chen, L.1
Madura, K.2
-
18
-
-
11144280578
-
Identification and validation of commonly overexpressed genes in solid tumors by comparison of microarray data
-
Pilarsky, C., Wenzig, M., Specht, T., Saeger, H. D., and Grutzmann, R. (2004) Identification and validation of commonly overexpressed genes in solid tumors by comparison of microarray data. Neoplasia 6, 744-750
-
(2004)
Neoplasia
, vol.6
, pp. 744-750
-
-
Pilarsky, C.1
Wenzig, M.2
Specht, T.3
Saeger, H.D.4
Grutzmann, R.5
-
19
-
-
84875085823
-
Amplification Target ADRM1: Role as an Oncogene and Therapeutic Target for Ovarian Cancer
-
Fejzo, M. S., Anderson, L., von Euw, E. M., Kalous, O., Avliyakulov, N. K., Haykinson, M. J., Konecny, G. E., Finn, R. S., and Slamon, D. J. (2013) Amplification Target ADRM1: Role as an Oncogene and Therapeutic Target for Ovarian Cancer. Int. J. Mol. Sci. 14, 3094-3109
-
(2013)
Int. J. Mol. Sci.
, vol.14
, pp. 3094-3109
-
-
Fejzo, M.S.1
Anderson, L.2
Von Euw, E.M.3
Kalous, O.4
Avliyakulov, N.K.5
Haykinson, M.J.6
Konecny, G.E.7
Finn, R.S.8
Slamon, D.J.9
-
20
-
-
84891913291
-
A bis-benzylidine piperidone targeting proteasome ubiquitin receptor RPN13/ADRM1 as a therapy for cancer
-
Anchoori, R. K., Karanam, B., Peng, S., Wang, J. W., Jiang, R., Tanno, T., Orlowski, R. Z., Matsui, W., Zhao, M., Rudek, M. A., Hung, C. F., Chen, X., Walters, K. J., and Roden, R. B. (2013) A bis-benzylidine piperidone targeting proteasome ubiquitin receptor RPN13/ADRM1 as a therapy for cancer. Cancer Cell 24, 791-805
-
(2013)
Cancer Cell
, vol.24
, pp. 791-805
-
-
Anchoori, R.K.1
Karanam, B.2
Peng, S.3
Wang, J.W.4
Jiang, R.5
Tanno, T.6
Orlowski, R.Z.7
Matsui, W.8
Zhao, M.9
Rudek, M.A.10
Hung, C.F.11
Chen, X.12
Walters, K.J.13
Roden, R.B.14
-
21
-
-
84930221978
-
A reversible and highly selective inhibitor of the proteasomal ubiquitin receptor rpn13 is toxic to multiple myeloma cells
-
Trader, D. J., Simanski, S., and Kodadek, T. (2015) A reversible and highly selective inhibitor of the proteasomal ubiquitin receptor rpn13 is toxic to multiple myeloma cells. J. Am. Chem. Soc. 137, 6312-6319
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 6312-6319
-
-
Trader, D.J.1
Simanski, S.2
Kodadek, T.3
-
22
-
-
58049208190
-
Genome-wide loss-of-function screen reveals an important role for the proteasome in HDAC inhibitor-induced apoptosis
-
Fotheringham, S., Epping, M. T., Stimson, L., Khan, O., Wood, V., Pezzella, F., Bernards, R., and La Thangue, N. B. (2009) Genome-wide loss-of-function screen reveals an important role for the proteasome in HDAC inhibitor-induced apoptosis. Cancer Cell 15, 57-66
-
(2009)
Cancer Cell
, vol.15
, pp. 57-66
-
-
Fotheringham, S.1
Epping, M.T.2
Stimson, L.3
Khan, O.4
Wood, V.5
Pezzella, F.6
Bernards, R.7
La Thangue, N.B.8
-
23
-
-
77950877402
-
HR23B is a biomarker for tumor sensitivity to HDAC inhibitor-based therapy
-
Khan, O., Fotheringham, S., Wood, V., Stimson, L., Zhang, C., Pezzella, F., Duvic, M., Kerr, D. J., and La Thangue, N. B. (2010) HR23B is a biomarker for tumor sensitivity to HDAC inhibitor-based therapy. Proc. Natl. Acad. Sci. USA 107, 6532-6537
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 6532-6537
-
-
Khan, O.1
Fotheringham, S.2
Wood, V.3
Stimson, L.4
Zhang, C.5
Pezzella, F.6
Duvic, M.7
Kerr, D.J.8
La Thangue, N.B.9
-
24
-
-
34247349494
-
Defining how ubiquitin receptors hHR23a and S5a bind polyubiquitin
-
Kang, Y., Chen, X., Lary, J. W., Cole, J. L., and Walters, K. J. (2007) Defining how ubiquitin receptors hHR23a and S5a bind polyubiquitin. J. Mol. Biol. 369, 168-176
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 168-176
-
-
Kang, Y.1
Chen, X.2
Lary, J.W.3
Cole, J.L.4
Walters, K.J.5
-
25
-
-
44349094727
-
Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction
-
Schreiner, P., Chen, X., Husnjak, K., Randles, L., Zhang, N., Elsasser, S., Finley, D., Dikic, I., Walters, K. J., and Groll, M. (2008) Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. Nature 453, 548-552
-
(2008)
Nature
, vol.453
, pp. 548-552
-
-
Schreiner, P.1
Chen, X.2
Husnjak, K.3
Randles, L.4
Zhang, N.5
Elsasser, S.6
Finley, D.7
Dikic, I.8
Walters, K.J.9
Groll, M.10
-
26
-
-
84880157841
-
Conformational switching of the 26S proteasome enables substrate degradation
-
Matyskiela, M. E., Lander, G. C., and Martin, A. (2013) Conformational switching of the 26S proteasome enables substrate degradation. Nat. Struct. Mol. Biol. 20, 781-788
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 781-788
-
-
Matyskiela, M.E.1
Lander, G.C.2
Martin, A.3
-
27
-
-
84949034885
-
A High Affinity hRpn2-Derived Peptide That Displaces Human Rpn13 from Proteasome in 293T Cells
-
Lu, X., Liu, F., Durham, S. E., Tarasov, S. G., and Walters, K. J. (2015) A High Affinity hRpn2-Derived Peptide That Displaces Human Rpn13 from Proteasome in 293T Cells. PLoS One 10, e0140518
-
(2015)
PLoS One
, vol.10
, pp. e0140518
-
-
Lu, X.1
Liu, F.2
Durham, S.E.3
Tarasov, S.G.4
Walters, K.J.5
-
28
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein inter-actome
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. (2001) A comprehensive two-hybrid analysis to explore the yeast protein inter-actome. Proc. Natl. Acad. Sci. U.S.A. 98, 4569-4574
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
29
-
-
0036713383
-
Proteasome subunit Rpn1 binds ubiquitin-like protein domains
-
Elsasser, S., Gali, R. R., Schwickart, M., Larsen, C. N., Leggett, D. S., Muller, B., Feng, M. T., Tubing, F., Dittmar, G. A., and Finley, D. (2002) Proteasome subunit Rpn1 binds ubiquitin-like protein domains. Nat. Cell Biol. 4, 725-730
-
(2002)
Nat. Cell Biol.
, vol.4
, pp. 725-730
-
-
Elsasser, S.1
Gali, R.R.2
Schwickart, M.3
Larsen, C.N.4
Leggett, D.S.5
Muller, B.6
Feng, M.T.7
Tubing, F.8
Dittmar, G.A.9
Finley, D.10
-
30
-
-
84959019581
-
Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome
-
aad9421
-
Shi, Y., Chen, X., Elsasser, S., Stocks, B. B., Tian, G., Lee, B. H., Zhang, N., de Poot, S. A., Tuebing, F., Sun, S., Vannoy, J., Tarasov, S. G., Engen, J. R., Finley, D., and Walters, K.J. (2016) Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome. Science 351 (6275) pii: aad9421
-
(2016)
Science
, vol.351
, Issue.6275
-
-
Shi, Y.1
Chen, X.2
Elsasser, S.3
Stocks, B.B.4
Tian, G.5
Lee, B.H.6
Zhang, N.7
De Poot, S.A.8
Tuebing, F.9
Sun, S.10
Vannoy, J.11
Tarasov, S.G.12
Engen, J.R.13
Finley, D.14
Walters, K.J.15
-
31
-
-
0033600798
-
Interaction of hHR23 with S5a. The ubiquitin-like domain of hHR23 mediates interaction with S5a subunit of 26 S proteasome
-
Hiyama, H., Yokoi, M., Masutani, C., Sugasawa, K., Maekawa, T., Tanaka, K., Hoeijmakers, J. H., and Hanaoka, F. (1999) Interaction of hHR23 with S5a. The ubiquitin-like domain of hHR23 mediates interaction with S5a subunit of 26 S proteasome. J. Biol. Chem. 274, 28019-28025
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 28019-28025
-
-
Hiyama, H.1
Yokoi, M.2
Masutani, C.3
Sugasawa, K.4
Maekawa, T.5
Tanaka, K.6
Hoeijmakers, J.H.7
Hanaoka, F.8
-
32
-
-
0037065732
-
Structural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a
-
Walters, K. J., Kleijnen, M. F., Goh, A. M., Wagner, G., and Howley, P. M. (2002) Structural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a. Biochemistry 41, 1767-1777
-
(2002)
Biochemistry
, vol.41
, pp. 1767-1777
-
-
Walters, K.J.1
Kleijnen, M.F.2
Goh, A.M.3
Wagner, G.4
Howley, P.M.5
-
33
-
-
2442520399
-
Ubiquilin inter-acts with ubiquitylated proteins and proteasome through its ubiquitin-associated and ubiquitin-like domains
-
Ko, H. S., Uehara, T., Tsuruma, K., and Nomura, Y. (2004) Ubiquilin inter-acts with ubiquitylated proteins and proteasome through its ubiquitin-associated and ubiquitin-like domains. FEBS Lett. 566, 110-114
-
(2004)
FEBS Lett.
, vol.566
, pp. 110-114
-
-
Ko, H.S.1
Uehara, T.2
Tsuruma, K.3
Nomura, Y.4
-
34
-
-
3042677641
-
Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome
-
Elsasser, S., Chandler-Militello, D., Muller, B., Hanna, J., and Finley, D. (2004) Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome. J. Biol. Chem. 279, 26817-26822
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26817-26822
-
-
Elsasser, S.1
Chandler-Militello, D.2
Muller, B.3
Hanna, J.4
Finley, D.5
-
35
-
-
3142566639
-
Multiubiq-uitin chain receptors define a layer of substrate selectivity in the ubiqui-tin-proteasome system
-
Verma, R., Oania, R., Graumann, J., and Deshaies, R. J. (2004) Multiubiq-uitin chain receptors define a layer of substrate selectivity in the ubiqui-tin-proteasome system. Cell 118, 99-110
-
(2004)
Cell
, vol.118
, pp. 99-110
-
-
Verma, R.1
Oania, R.2
Graumann, J.3
Deshaies, R.J.4
-
36
-
-
30544436454
-
Comprehensive mass spectromet-ric analysis of the 20S proteasome complex
-
Huang, L., and Burlingame, A. L. (2005) Comprehensive mass spectromet-ric analysis of the 20S proteasome complex. Methods Enzymol. 405, 187-236
-
(2005)
Methods Enzymol.
, vol.405
, pp. 187-236
-
-
Huang, L.1
Burlingame, A.L.2
-
37
-
-
36749082830
-
Mammalian proteasome subpopula-tions with distinct molecular compositions and proteolytic activities
-
Drews, O., Wildgruber, R., Zong, C., Sukop, U., Nissum, M., Weber, G., Gomes, A. V., and Ping, P. (2007) Mammalian proteasome subpopula-tions with distinct molecular compositions and proteolytic activities. Mol. Cell Proteomics 6, 2021-2031
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 2021-2031
-
-
Drews, O.1
Wildgruber, R.2
Zong, C.3
Sukop, U.4
Nissum, M.5
Weber, G.6
Gomes, A.V.7
Ping, P.8
-
38
-
-
84902075951
-
Label-free quantitative proteomics reveals the dynamics of proteasome complexes composition and stoichiometry in a wide range of human cell lines
-
Fabre, B., Lambour, T., Garrigues, L., Ducoux-Petit, M., Amalric, F., Monsar-rat, B., Burlet-Schiltz, O., and Bousquet-Dubouch, M. P. (2014) Label-free quantitative proteomics reveals the dynamics of proteasome complexes composition and stoichiometry in a wide range of human cell lines. J. Proteome Res. 13, 3027-3037
-
(2014)
J. Proteome Res.
, vol.13
, pp. 3027-3037
-
-
Fabre, B.1
Lambour, T.2
Garrigues, L.3
Ducoux-Petit, M.4
Amalric, F.5
Monsarrat, B.6
Burlet-Schiltz, O.7
Bousquet-Dubouch, M.P.8
-
39
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A. C., Aloy, P., Grandi, P., Krause, R., Boesche, M., Marzioch, M., Rau, C., Jensen, L. J., Bastuck, S., Dumpelfeld, B., Edelmann, A., Heurtier, M. A., Hoffman, V., Hoefert, C., Klein, K., Hudak, M., Michon, A. M., Schelder, M., Schirle, M., Remor, M., Rudi, T., Hooper, S., Bauer, A., Bouwmeester, T., Casari, G., Drewes, G., Neubauer, G., Rick, J. M., Kuster, B., Bork, P., Russell, R. B., and Superti-Furga, G. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440, 631-636
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
40
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan, N. J., Cagney, G., Yu, H., Zhong, G., Guo, X., Ignatchenko, A., Li, J., Pu, S., Datta, N., Tikuisis, A. P., Punna, T., Peregrin-Alvarez, J. M., Shales, M., Zhang, X., Davey, M., Robinson, M. D., Paccanaro, A., Bray, J. E., Sheung, A., Beattie, B., Richards, D. P., Canadien, V., Lalev, A., Mena, F., Wong, P., Starostine, A., Canete, M. M., Vlasblom, J., Wu, S., Orsi, C., Collins, S. R., Chandran, S., Haw, R., Rilstone, J. J., Gandi, K., Thompson, N. J., Musso, G., St Onge, P., Ghanny, S., Lam, M. H., Butland, G., Altaf-Ul, A. M., Kanaya, S., Shilatifard, A., O'Shea, E., Weissman, J. S., Ingles, C. J., Hughes, T. R., Parkinson, J., Gerstein, M., Wodak, S.J., Emili, A., and Greenblatt, J. F. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440, 637-643
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrin-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
41
-
-
34147121646
-
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
-
Collins, S. R., Kemmeren, P., Zhao, X. C., Greenblatt, J. F., Spencer, F., Holstege, F. C., Weissman, J. S., and Krogan, N. J. (2007) Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol. Cell. Proteomics 6, 439-450
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 439-450
-
-
Collins, S.R.1
Kemmeren, P.2
Zhao, X.C.3
Greenblatt, J.F.4
Spencer, F.5
Holstege, F.C.6
Weissman, J.S.7
Krogan, N.J.8
-
42
-
-
84866095385
-
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
-
Herzog, F., Kahraman, A., Boehringer, D., Mak, R., Bracher, A., Walzthoeni, T., Leitner, A., Beck, M., Hartl, F. U., Ban, N., Malmstrom, L., and Aebersold, R. (2012) Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science 337, 1348-1352
-
(2012)
Science
, vol.337
, pp. 1348-1352
-
-
Herzog, F.1
Kahraman, A.2
Boehringer, D.3
Mak, R.4
Bracher, A.5
Walzthoeni, T.6
Leitner, A.7
Beck, M.8
Hartl, F.U.9
Ban, N.10
Malmstrom, L.11
Aebersold, R.12
-
43
-
-
84925546136
-
Bimolecular affinity purifica-tion: A variation of TAP with multiple applications
-
Starokadomskyy, P., and Burstein, E. (2014) Bimolecular affinity purifica-tion: a variation of TAP with multiple applications. Methods Mol. Biol. 1177, 193-209
-
(2014)
Methods Mol. Biol.
, vol.1177
, pp. 193-209
-
-
Starokadomskyy, P.1
Burstein, E.2
-
44
-
-
33645703441
-
A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivocross-linking
-
Tagwerker, C., Flick, K., Cui, M., Guerrero, C., Dou, Y., Auer, B., Baldi, P., Huang, L., and Kaiser, P. (2006) A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking. Mol. Cell. Proteomics. 5, 737-748
-
(2006)
Mol. Cell. Proteomics.
, vol.5
, pp. 737-748
-
-
Tagwerker, C.1
Flick, K.2
Cui, M.3
Guerrero, C.4
Dou, Y.5
Auer, B.6
Baldi, P.7
Huang, L.8
Kaiser, P.9
-
45
-
-
33947380146
-
Mass spectrometric characterization of the affinity-purified human 26S proteasome complex
-
Wang, X., Chen, C. F., Baker, P. R., Chen, P. L., Kaiser, P., and Huang, L. (2007) Mass spectrometric characterization of the affinity-purified human 26S proteasome complex. Biochemistry 46, 3553-3565
-
(2007)
Biochemistry
, vol.46
, pp. 3553-3565
-
-
Wang, X.1
Chen, C.F.2
Baker, P.R.3
Chen, P.L.4
Kaiser, P.5
Huang, L.6
-
46
-
-
39049117451
-
Identifying dynamic interactors of protein complexes by quantitative mass spectrometry
-
Wang, X., and Huang, L. (2008) Identifying dynamic interactors of protein complexes by quantitative mass spectrometry. Mol. Cell. Proteomics 7, 46-57
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 46-57
-
-
Wang, X.1
Huang, L.2
-
47
-
-
33644670152
-
An integrated mass spectrometry-based proteomic approach: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network
-
Guerrero, C., Tagwerker, C., Kaiser, P., and Huang, L. (2006) An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network. Mol. Cell. Proteomics 5, 366-378
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 366-378
-
-
Guerrero, C.1
Tagwerker, C.2
Kaiser, P.3
Huang, L.4
-
48
-
-
51749093587
-
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis
-
Guerrero, C., Milenkovic, T., Przulj, N., Kaiser, P., and Huang, L. (2008) Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis. Proc. Natl. Acad. Sci. USA 105, 13333-13338
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 13333-13338
-
-
Guerrero, C.1
Milenkovic, T.2
Przulj, N.3
Kaiser, P.4
Huang, L.5
-
49
-
-
84921469305
-
A new in vivo cross-linking mass spectrom-etry platform to define protein-protein interactions in living cells
-
Kaake, R. M., Wang, X., Burke, A., Yu, C., Kandur, W., Yang, Y., Novtisky, E. J., Second, T., Duan, J., Kao, A., Guan, S., Vellucci, D., Rychnovsky, S. D., and Huang, L. (2014) A new in vivo cross-linking mass spectrom-etry platform to define protein-protein interactions in living cells. Mol. Cell. Proteomics 13, 3533-3543
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 3533-3543
-
-
Kaake, R.M.1
Wang, X.2
Burke, A.3
Yu, C.4
Kandur, W.5
Yang, Y.6
Novtisky, E.J.7
Second, T.8
Duan, J.9
Kao, A.10
Guan, S.11
Vellucci, D.12
Rychnovsky, S.D.13
Huang, L.14
-
50
-
-
77950642747
-
Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy
-
Kaake, R. M., Milenkovic, T., Przulj, N., Kaiser, P., and Huang, L. (2010) Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. J. Proteome Res. 9, 2016-2029
-
(2010)
J. Proteome Res.
, vol.9
, pp. 2016-2029
-
-
Kaake, R.M.1
Milenkovic, T.2
Przulj, N.3
Kaiser, P.4
Huang, L.5
-
51
-
-
84861112803
-
Mapping the protein interaction network of the human COP9 signalo-some complex using a label-free QTAX strategy
-
Fang, L., Kaake, R. M., Patel, V. R., Yang, Y., Baldi, P., and Huang, L. (2012) Mapping the protein interaction network of the human COP9 signalo-some complex using a label-free QTAX strategy. Mol. Cell Proteomics 11, 138-147
-
(2012)
Mol. Cell Proteomics
, vol.11
, pp. 138-147
-
-
Fang, L.1
Kaake, R.M.2
Patel, V.R.3
Yang, Y.4
Baldi, P.5
Huang, L.6
-
52
-
-
84910622339
-
A pipeline for determining protein-protein interactions and proximities in the cellular milieu
-
Subbotin, R. I., and Chait, B. T. (2014) A pipeline for determining protein-protein interactions and proximities in the cellular milieu. Mol. Cell. Proteomics. 13, 2824-2835
-
(2014)
Mol. Cell. Proteomics.
, vol.13
, pp. 2824-2835
-
-
Subbotin, R.I.1
Chait, B.T.2
-
53
-
-
69249119365
-
Mapping the local protein interactome of the NuA3 histone acetyltransferase
-
Smart, S. K., Mackintosh, S. G., Edmondson, R. D., Taverna, S. D., and Tackett, A. J. (2009) Mapping the local protein interactome of the NuA3 histone acetyltransferase. Protein Sci. 18, 1987-1997
-
(2009)
Protein Sci.
, vol.18
, pp. 1987-1997
-
-
Smart, S.K.1
MacKintosh, S.G.2
Edmondson, R.D.3
Taverna, S.D.4
Tackett, A.J.5
-
54
-
-
84874620572
-
Subcellular distribution and dynamics of active proteasome complexes unraveled by a workflow combining in vivo complex cross-linking and quantitative proteomics
-
Fabre, B., Lambour, T., Delobel, J., Amalric, F., Monsarrat, B., Burlet-Schiltz, O., and Bousquet-Dubouch, M.P. (2013) Subcellular distribution and dynamics of active proteasome complexes unraveled by a workflow combining in vivo complex cross-linking and quantitative proteomics. Mol. Cell. Proteomics. 12, 687-699
-
(2013)
Mol. Cell. Proteomics.
, vol.12
, pp. 687-699
-
-
Fabre, B.1
Lambour, T.2
Delobel, J.3
Amalric, F.4
Monsarrat, B.5
Burlet-Schiltz, O.6
Bousquet-Dubouch, M.P.7
-
55
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
56
-
-
84907197082
-
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
-
Cox, J., Hein, M. Y., Luber, C. A., Paron, I., Nagaraj, N., and Mann, M. (2014) Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol. Cell. Proteomics 13, 2513-2526
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 2513-2526
-
-
Cox, J.1
Hein, M.Y.2
Luber, C.A.3
Paron, I.4
Nagaraj, N.5
Mann, M.6
-
57
-
-
80052580969
-
Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset ALS and ALS/dementia
-
Deng, H. X., Chen, W., Hong, S. T., Boycott, K. M., Gorrie, G. H., Siddique, N., Yang, Y., Fecto, F., Shi, Y., Zhai, H., Jiang, H., Hirano, M., Ramper-saud, E., Jansen, G. H., Donkervoort, S., Bigio, E. H., Brooks, B. R., Ajroud, K., Sufit, R. L., Haines, J. L., Mugnaini, E., Pericak-Vance, M. A., and Siddique, T. (2011) Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset ALS and ALS/dementia. Nature 477, 211-215
-
(2011)
Nature
, vol.477
, pp. 211-215
-
-
Deng, H.X.1
Chen, W.2
Hong, S.T.3
Boycott, K.M.4
Gorrie, G.H.5
Siddique, N.6
Yang, Y.7
Fecto, F.8
Shi, Y.9
Zhai, H.10
Jiang, H.11
Hirano, M.12
Ramper-Saud, E.13
Jansen, G.H.14
Donkervoort, S.15
Bigio, E.H.16
Brooks, B.R.17
Ajroud, K.18
Sufit, R.L.19
Haines, J.L.20
Mugnaini, E.21
Pericak-Vance, M.A.22
Siddique, T.23
more..
-
58
-
-
84875420992
-
Ubiquilin-1 and protein quality control in Alzheimer disease
-
El Ayadi, A., Stieren, E. S., Barral, J. M., and Boehning, D. (2013) Ubiquilin-1 and protein quality control in Alzheimer disease. Prion 7, 164-169
-
(2013)
Prion
, vol.7
, pp. 164-169
-
-
El Ayadi, A.1
Stieren, E.S.2
Barral, J.M.3
Boehning, D.4
-
59
-
-
0037131243
-
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome
-
Verma, R., Aravind, L., Oania, R., McDonald, W. H., Yates, J. R. I., Koonin, E. V., and Deshaies, R. J. (2002) Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 298, 611-615
-
(2002)
Science
, vol.298
, pp. 611-615
-
-
Verma, R.1
Aravind, L.2
Oania, R.3
McDonald, W.H.4
Yates, J.R.I.5
Koonin, E.V.6
Deshaies, R.J.7
-
60
-
-
0036753063
-
Multiple associated proteins regulate proteasome structure and function
-
Leggett, D. S., Hanna, J., Borodovsky, A., Crosas, B., Schmidt, M., Baker, R. T., Walz, T., Ploegh, H., and Finley, D. (2002) Multiple associated proteins regulate proteasome structure and function. Mol. Cell 10, 495-507
-
(2002)
Mol. Cell
, vol.10
, pp. 495-507
-
-
Leggett, D.S.1
Hanna, J.2
Borodovsky, A.3
Crosas, B.4
Schmidt, M.5
Baker, R.T.6
Walz, T.7
Ploegh, H.8
Finley, D.9
-
61
-
-
84896899053
-
Inherent asymmetry in the 26S proteasome is defined by the ubiquitin receptor RPN13
-
Berko, D., Herkon, O., Braunstein, I., Isakov, E., David, Y., Ziv, T., Navon, A., and Stanhill, A. (2014) Inherent asymmetry in the 26S proteasome is defined by the ubiquitin receptor RPN13. J. Biol. Chem. 289, 5609-5618
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 5609-5618
-
-
Berko, D.1
Herkon, O.2
Braunstein, I.3
Isakov, E.4
David, Y.5
Ziv, T.6
Navon, A.7
Stanhill, A.8
-
62
-
-
0034694907
-
Proteasome-dependent degradation of cytosolic chaperonin CCT
-
Yokota, S., Kayano, T., Ohta, T., Kurimoto, M., Yanagi, H., Yura, T., and Kubota, H. (2000) Proteasome-dependent degradation of cytosolic chaperonin CCT. Biochem. Biophys. Res. Commun. 279, 712-717
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.279
, pp. 712-717
-
-
Yokota, S.1
Kayano, T.2
Ohta, T.3
Kurimoto, M.4
Yanagi, H.5
Yura, T.6
Kubota, H.7
-
63
-
-
78649980437
-
Regulation of the 26S proteasome complex during oxidative stress
-
Wang, X., Yen, J., Kaiser, P., and Huang, L. (2010) Regulation of the 26S proteasome complex during oxidative stress. Sci. Signal. 3, ra88
-
(2010)
Sci. Signal.
, vol.3
, pp. ra88
-
-
Wang, X.1
Yen, J.2
Kaiser, P.3
Huang, L.4
-
64
-
-
84890197334
-
The complexity of recognition of ubiquitinated substrates by the 26S proteasome
-
Ciechanover, A., and Stanhill, A. (2014) The complexity of recognition of ubiquitinated substrates by the 26S proteasome. Biochim. Biophys. Acta 1843, 86-96
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 86-96
-
-
Ciechanover, A.1
Stanhill, A.2
-
65
-
-
33748188085
-
Proteasome recruitment and activation of the Uch37 deubiquiti-nating enzyme by Adrm1
-
Yao, T., Song, L., Xu, W., DeMartino, G. N., Florens, L., Swanson, S. K., Washburn, M. P., Conaway, R. C., Conaway, J. W., and Cohen, R. E. (2006) Proteasome recruitment and activation of the Uch37 deubiquiti-nating enzyme by Adrm1. Nat. Cell Biol. 8, 994-1002
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 994-1002
-
-
Yao, T.1
Song, L.2
Xu, W.3
DeMartino, G.N.4
Florens, L.5
Swanson, S.K.6
Washburn, M.P.7
Conaway, R.C.8
Conaway, J.W.9
Cohen, R.E.10
-
66
-
-
41649091606
-
Relative structural and functional roles of multiple deubiquitylating proteins associated with mammalian 26S proteasome
-
Koulich, E., Li, X., and DeMartino, G. N. (2008) Relative structural and functional roles of multiple deubiquitylating proteins associated with mammalian 26S proteasome. Mol. Biol. Cell 19, 1072-1082
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 1072-1082
-
-
Koulich, E.1
Li, X.2
DeMartino, G.N.3
-
67
-
-
33749049581
-
Deubiquitinating enzyme Ubp6 functions noncatalytically to delay pro-teasomal degradation
-
Hanna, J., Hathaway, N. A., Tone, Y., Crosas, B., Elsasser, S., Kirkpatrick, D. S., Leggett, D. S., Gygi, S. P., King, R. W., and Finley, D. (2006) Deubiquitinating enzyme Ubp6 functions noncatalytically to delay pro-teasomal degradation. Cell 127, 99-111
-
(2006)
Cell
, vol.127
, pp. 99-111
-
-
Hanna, J.1
Hathaway, N.A.2
Tone, Y.3
Crosas, B.4
Elsasser, S.5
Kirkpatrick, D.S.6
Leggett, D.S.7
Gygi, S.P.8
King, R.W.9
Finley, D.10
-
68
-
-
77956527159
-
Enhancement of proteasome activity by a small-molecule inhibitor of USP14
-
Lee, B. H., Lee, M. J., Park, S., Oh, D. C., Elsasser, S., Chen, P. C., Gartner, C., Dimova, N., Hanna, J., Gygi, S. P., Wilson, S. M., King, R. W., and Finley, D. (2010) Enhancement of proteasome activity by a small-molecule inhibitor of USP14. Nature 467, 179-184
-
(2010)
Nature
, vol.467
, pp. 179-184
-
-
Lee, B.H.1
Lee, M.J.2
Park, S.3
Oh, D.C.4
Elsasser, S.5
Chen, P.C.6
Gartner, C.7
Dimova, N.8
Hanna, J.9
Gygi, S.P.10
Wilson, S.M.11
King, R.W.12
Finley, D.13
-
69
-
-
0031038169
-
Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome
-
Lam, Y. A., Xu, W., DeMartino, G. N., and Cohen, R. E. (1997) Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome. Nature 385, 737-740
-
(1997)
Nature
, vol.385
, pp. 737-740
-
-
Lam, Y.A.1
Xu, W.2
DeMartino, G.N.3
Cohen, R.E.4
-
70
-
-
33749348820
-
A novel proteasome interacting protein recruits the deubiquitinating enzyme UCH37 to 26S proteasomes
-
Hamazaki, J., Iemura, S., Natsume, T., Yashiroda, H., Tanaka, K., and Murata, S. (2006) A novel proteasome interacting protein recruits the deubiquitinating enzyme UCH37 to 26S proteasomes. Embo J. 25, 4524-4536
-
(2006)
Embo J.
, vol.25
, pp. 4524-4536
-
-
Hamazaki, J.1
Iemura, S.2
Natsume, T.3
Yashiroda, H.4
Tanaka, K.5
Murata, S.6
-
71
-
-
33845713194
-
HRpn13/ADRM1/GP110 is a novel proteasome subunit that binds the deubiquitinating enzyme, UCH37
-
Qiu, X. B., Ouyang, S. Y., Li, C. J., Miao, S., Wang, L., and Goldberg, A. L. (2006) hRpn13/ADRM1/GP110 is a novel proteasome subunit that binds the deubiquitinating enzyme, UCH37. Embo J. 25, 5742-5753
-
(2006)
Embo J.
, vol.25
, pp. 5742-5753
-
-
Qiu, X.B.1
Ouyang, S.Y.2
Li, C.J.3
Miao, S.4
Wang, L.5
Goldberg, A.L.6
-
72
-
-
84860376787
-
Rpn1 and Rpn2 coordinate ubiquitin processing factors at pro-teasome
-
Rosenzweig, R., Bronner, V., Zhang, D., Fushman, D., and Glickman, M. H. (2012) Rpn1 and Rpn2 coordinate ubiquitin processing factors at pro-teasome. J. Biol. Chem. 287(18), 14659-14671
-
(2012)
J. Biol. Chem.
, vol.287
, Issue.18
, pp. 14659-14671
-
-
Rosenzweig, R.1
Bronner, V.2
Zhang, D.3
Fushman, D.4
Glickman, M.H.5
-
73
-
-
84937111175
-
Structural characterization of the interaction of Ubp6 with the 26S pro-teasome
-
Aufderheide, A., Beck, F., Stengel, F., Hartwig, M., Schweitzer, A., Pfeifer, G., Goldberg, A. L., Sakata, E., Baumeister, W., and Forster, F. (2015) Structural characterization of the interaction of Ubp6 with the 26S pro-teasome. Proc. Natl. Acad. Sci. USA 112, 8626-8631
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 8626-8631
-
-
Aufderheide, A.1
Beck, F.2
Stengel, F.3
Hartwig, M.4
Schweitzer, A.5
Pfeifer, G.6
Goldberg, A.L.7
Sakata, E.8
Baumeister, W.9
Forster, F.10
-
74
-
-
84940984237
-
Ubp6 deubiquitinase controls conformational dynamics and substrate degradation of the 26S proteasome
-
Bashore, C., Dambacher, C. M., Goodall, E. A., Matyskiela, M. E., Lander, G. C., and Martin, A. (2015) Ubp6 deubiquitinase controls conformational dynamics and substrate degradation of the 26S proteasome. Nat. Struct. Mol. Biol. 22, 712-719
-
(2015)
Nat. Struct. Mol. Biol.
, vol.22
, pp. 712-719
-
-
Bashore, C.1
Dambacher, C.M.2
Goodall, E.A.3
Matyskiela, M.E.4
Lander, G.C.5
Martin, A.6
-
75
-
-
36849059755
-
Stability of the proteasome can be regulated allosterically through engagement of its proteolytic active sites
-
Kleijnen, M. F., Roelofs, J., Park, S., Hathaway, N. A., Glickman, M., King, R. W., and Finley, D. (2007) Stability of the proteasome can be regulated allosterically through engagement of its proteolytic active sites. Nat. Struct. Mol. Biol. 14, 1180-1188
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1180-1188
-
-
Kleijnen, M.F.1
Roelofs, J.2
Park, S.3
Hathaway, N.A.4
Glickman, M.5
King, R.W.6
Finley, D.7
-
76
-
-
80054703106
-
Loss of Rpt5 protein interactions with the core particle and Nas2 protein causes the formation of faulty proteasomes that are inhibited by Ecm29 protein
-
Lee, S. Y., De la Mota-Peynado, A., and Roelofs, J. (2011) Loss of Rpt5 protein interactions with the core particle and Nas2 protein causes the formation of faulty proteasomes that are inhibited by Ecm29 protein. J. Biol. Chem. 286, 36641-36651
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 36641-36651
-
-
Lee, S.Y.1
De La Mota-Peynado, A.2
Roelofs, J.3
-
77
-
-
77957817388
-
A protein interaction network for Ecm29 links the 26 S proteasome to molecular motors and endosomal components
-
Gorbea, C., Pratt, G., Ustrell, V., Bell, R., Sahasrabudhe, S., Hughes, R. E., and Rechsteiner, M. (2010) A protein interaction network for Ecm29 links the 26 S proteasome to molecular motors and endosomal components. J. Biol. Chem. 285, 31616-31633
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 31616-31633
-
-
Gorbea, C.1
Pratt, G.2
Ustrell, V.3
Bell, R.4
Sahasrabudhe, S.5
Hughes, R.E.6
Rechsteiner, M.7
-
78
-
-
84885793620
-
Depletion of the 26S proteasome adaptor Ecm29 increases Toll-like receptor 3 signaling
-
Gorbea, C., Rechsteiner, M., Vallejo, J. G., and Bowles, N. E. (2013) Depletion of the 26S proteasome adaptor Ecm29 increases Toll-like receptor 3 signaling. Sci. Signal. 6, ra86
-
(2013)
Sci. Signal.
, vol.6
, pp. ra86
-
-
Gorbea, C.1
Rechsteiner, M.2
Vallejo, J.G.3
Bowles, N.E.4
-
79
-
-
84878942836
-
Molecular architecture and assembly of the eukaryotic proteasome
-
Tomko, R. J., Jr., and Hochstrasser, M. (2013) Molecular architecture and assembly of the eukaryotic proteasome. Annu. Rev. Biochem. 82, 415-445
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 415-445
-
-
Tomko, R.J.1
Hochstrasser, M.2
-
80
-
-
65849109465
-
Assembly pathway of the Mammalian proteasome base subcomplex is mediated by multiple specific chap-erones
-
Kaneko, T., Hamazaki, J., Iemura, S., Sasaki, K., Furuyama, K., Natsume, T., Tanaka, K., and Murata, S. (2009) Assembly pathway of the Mammalian proteasome base subcomplex is mediated by multiple specific chap-erones. Cell 137, 914-925
-
(2009)
Cell
, vol.137
, pp. 914-925
-
-
Kaneko, T.1
Hamazaki, J.2
Iemura, S.3
Sasaki, K.4
Furuyama, K.5
Natsume, T.6
Tanaka, K.7
Murata, S.8
-
81
-
-
84910031803
-
Targeting Hsp90/Hsp70-based protein quality control for treatment of adult onset neurodegenerative diseases
-
Pratt, W. B., Gestwicki, J. E., Osawa, Y., and Lieberman, A. P. (2015) Targeting Hsp90/Hsp70-based protein quality control for treatment of adult onset neurodegenerative diseases. Annu. Rev. Pharmacol. Toxicol. 55, 353-371
-
(2015)
Annu. Rev. Pharmacol. Toxicol.
, vol.55
, pp. 353-371
-
-
Pratt, W.B.1
Gestwicki, J.E.2
Osawa, Y.3
Lieberman, A.P.4
-
82
-
-
80052265819
-
HSP70 mediates dissociation and reassociation of the 26S proteasome during adaptation to oxidative stress
-
Grune, T., Catalgol, B., Licht, A., Ermak, G., Pickering, A. M., Ngo, J. K., and Davies, K. J. (2011) HSP70 mediates dissociation and reassociation of the 26S proteasome during adaptation to oxidative stress. Free Radic. Biol. Med. 51, 1355-1364
-
(2011)
Free Radic. Biol. Med.
, vol.51
, pp. 1355-1364
-
-
Grune, T.1
Catalgol, B.2
Licht, A.3
Ermak, G.4
Pickering, A.M.5
Ngo, J.K.6
Davies, K.J.7
-
83
-
-
0042313977
-
The molecular chaperone Hsp90 plays a role in the assembly and maintenance of the 26S proteasome
-
Imai, J., Maruya, M., Yashiroda, H., Yahara, I., and Tanaka, K. (2003) The molecular chaperone Hsp90 plays a role in the assembly and maintenance of the 26S proteasome. Embo J. 22, 3557-3567
-
(2003)
Embo J.
, vol.22
, pp. 3557-3567
-
-
Imai, J.1
Maruya, M.2
Yashiroda, H.3
Yahara, I.4
Tanaka, K.5
-
84
-
-
18844422114
-
Evidence for chaperone heterocomplexes containing both Hsp90 and VCP
-
Prince, T., Shao, J., Matts, R. L., and Hartson, S. D. (2005) Evidence for chaperone heterocomplexes containing both Hsp90 and VCP. Biochem. Biophys. Res. Commun. 331, 1331-1337
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.331
, pp. 1331-1337
-
-
Prince, T.1
Shao, J.2
Matts, R.L.3
Hartson, S.D.4
-
85
-
-
33845764862
-
Ubiquitin receptor proteins hHR23a and hPLIC2 interact
-
Kang, Y., Zhang, N., Koepp, D. M., and Walters, K. J. (2007) Ubiquitin receptor proteins hHR23a and hPLIC2 interact. J. Mol. Biol. 365, 1093-1101
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 1093-1101
-
-
Kang, Y.1
Zhang, N.2
Koepp, D.M.3
Walters, K.J.4
-
86
-
-
67649359951
-
Thioredoxin Txnl1/TRP32 is a redox-active cofactor of the 26 S proteasome
-
Andersen, K. M., Madsen, L., Prag, S., Johnsen, A. H., Semple, C. A., Hendil, K. B., and Hartmann-Petersen, R. (2009) Thioredoxin Txnl1/TRP32 is a redox-active cofactor of the 26 S proteasome. J. Biol. Chem. 284, 15246-15254
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 15246-15254
-
-
Andersen, K.M.1
Madsen, L.2
Prag, S.3
Johnsen, A.H.4
Semple, C.A.5
Hendil, K.B.6
Hartmann-Petersen, R.7
-
87
-
-
11144342006
-
Proteasome-mediated degradation of cotranslation-ally damaged proteins involves translation elongation factor 1A
-
Chuang, S. M., Chen, L., Lambertson, D., Anand, M., Kinzy, T. G., and Madura, K. (2005) Proteasome-mediated degradation of cotranslation-ally damaged proteins involves translation elongation factor 1A. Mol. Cell. Biol. 25, 403-413
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 403-413
-
-
Chuang, S.M.1
Chen, L.2
Lambertson, D.3
Anand, M.4
Kinzy, T.G.5
Madura, K.6
-
88
-
-
0033962442
-
A family of ubiquitin-like proteins binds the ATPase domain of Hsp70-like Stch
-
Kaye, F. J., Modi, S., Ivanovska, I., Koonin, E. V., Thress, K., Kubo, A., Kornbluth, S., and Rose, M. D. (2000) A family of ubiquitin-like proteins binds the ATPase domain of Hsp70-like Stch. FEBS Lett. 467, 348-355
-
(2000)
FEBS Lett.
, vol.467
, pp. 348-355
-
-
Kaye, F.J.1
Modi, S.2
Ivanovska, I.3
Koonin, E.V.4
Thress, K.5
Kubo, A.6
Kornbluth, S.7
Rose, M.D.8
-
89
-
-
70449723717
-
Ubiquilin and p97/VCP bind erasin, forming a complex involved in ERAD
-
Lim, P. J., Danner, R., Liang, J., Doong, H., Harman, C., Srinivasan, D., Rothenberg, C., Wang, H., Ye, Y., Fang, S., and Monteiro, M. J. (2009) Ubiquilin and p97/VCP bind erasin, forming a complex involved in ERAD. J. Cell Biol. 187, 201-217
-
(2009)
J. Cell Biol.
, vol.187
, pp. 201-217
-
-
Lim, P.J.1
Danner, R.2
Liang, J.3
Doong, H.4
Harman, C.5
Srinivasan, D.6
Rothenberg, C.7
Wang, H.8
Ye, Y.9
Fang, S.10
Monteiro, M.J.11
-
90
-
-
84922539969
-
Dss1 is a 26S proteasome ubiquitin receptor
-
Paraskevopoulos, K., Kriegenburg, F., Tatham, M. H., Rosner, H. I., Medina, B., Larsen, I. B., Brandstrup, R., Hardwick, K. G., Hay, R. T., Kragelund, B. B., Hartmann-Petersen, R., and Gordon, C. (2014) Dss1 is a 26S proteasome ubiquitin receptor. Mol. Cell. 56, 453-461
-
(2014)
Mol. Cell.
, vol.56
, pp. 453-461
-
-
Paraskevopoulos, K.1
Kriegenburg, F.2
Tatham, M.H.3
Rosner, H.I.4
Medina, B.5
Larsen, I.B.6
Brandstrup, R.7
Hardwick, K.G.8
Hay, R.T.9
Kragelund, B.B.10
Hartmann-Petersen, R.11
Gordon, C.12
-
91
-
-
78651092959
-
Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes
-
Kao, A., Chiu, C. L., Vellucci, D., Yang, Y., Patel, V. R., Guan, S., Randall, A., Baldi, P., Rychnovsky, S. D., and Huang, L. (2011) Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes. Mol. Cell Proteomics 10, M110.002212
-
(2011)
Mol. Cell Proteomics
, vol.10
, pp. M110002212
-
-
Kao, A.1
Chiu, C.L.2
Vellucci, D.3
Yang, Y.4
Patel, V.R.5
Guan, S.6
Randall, A.7
Baldi, P.8
Rychnovsky, S.D.9
Huang, L.10
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