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Volumn 47, Issue 3, 2016, Pages 324-333

Identification of genes in longissimus dorsi muscle differentially expressed between Wannanhua and Yorkshire pigs using RNA-sequencing

Author keywords

candidate genes; Chinese indigenous pig breed; meat quality; molecular mechanism

Indexed keywords

TRANSCRIPTOME;

EID: 84963620450     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/age.12421     Document Type: Article
Times cited : (44)

References (46)
  • 1
    • 33646865314 scopus 로고    scopus 로고
    • Identification of ERRalpha as a specific partner of PGC-1alpha for the activation of PDK4 gene expression in muscle
    • Araki M., &, Motojima K., (2006) Identification of ERRalpha as a specific partner of PGC-1alpha for the activation of PDK4 gene expression in muscle. FEBS Journal 273, 1669-80.
    • (2006) FEBS Journal , vol.273 , pp. 1669-1680
    • Araki, M.1    Motojima, K.2
  • 2
    • 26844550733 scopus 로고    scopus 로고
    • Muscle LIM protein plays both structural and functional roles in skeletal muscle
    • Barash I.A., Mathew L., Lahey M., Greaser M.L., &, Lieber R.L., (2005) Muscle LIM protein plays both structural and functional roles in skeletal muscle. AJP Cell Physiology 289, C1312-20.
    • (2005) AJP Cell Physiology , vol.289 , pp. C1312-C1320
    • Barash, I.A.1    Mathew, L.2    Lahey, M.3    Greaser, M.L.4    Lieber, R.L.5
  • 3
    • 1442352339 scopus 로고    scopus 로고
    • Role of the adipocyte, free fatty acids, and ectopic fat in pathogenesis of type 2 diabetes mellitus: Peroxisomal proliferator-activated receptor agonists provide a rational therapeutic approach
    • Bays H., Mandarino L., &, DeFronzo R.A., (2004) Role of the adipocyte, free fatty acids, and ectopic fat in pathogenesis of type 2 diabetes mellitus: peroxisomal proliferator-activated receptor agonists provide a rational therapeutic approach. Journal of Clinical Endocrinology and Metabolism 89, 463-78.
    • (2004) Journal of Clinical Endocrinology and Metabolism , vol.89 , pp. 463-478
    • Bays, H.1    Mandarino, L.2    DeFronzo, R.A.3
  • 4
    • 0038014077 scopus 로고    scopus 로고
    • Formation of functional heterodimers by isozymes 1 and 2 of pyruvate dehydrogenase kinase
    • Boulatnikov I., &, Popov K.M., (2003) Formation of functional heterodimers by isozymes 1 and 2 of pyruvate dehydrogenase kinase. Biochimica et Biophysica Acta 1645, 183-92.
    • (2003) Biochimica et Biophysica Acta , vol.1645 , pp. 183-192
    • Boulatnikov, I.1    Popov, K.M.2
  • 6
    • 49649092456 scopus 로고    scopus 로고
    • The relation between glycogen, lactate content and muscle fiber type composition, and their influence on postmortem glycolytic rate and pork quality
    • Choe J.H., Choi Y.M., Lee S.H., Shin H.G., Ryu Y.C., Hong K.C., &, Kim B.C., (2008) The relation between glycogen, lactate content and muscle fiber type composition, and their influence on postmortem glycolytic rate and pork quality. Meat Science 80, 355-62.
    • (2008) Meat Science , vol.80 , pp. 355-362
    • Choe, J.H.1    Choi, Y.M.2    Lee, S.H.3    Shin, H.G.4    Ryu, Y.C.5    Hong, K.C.6    Kim, B.C.7
  • 7
    • 64749096528 scopus 로고    scopus 로고
    • Muscle fiber characteristics, myofibrillar protein isoforms, and meat quality
    • Choi Y.M., &, Kim B.C., (2009) Muscle fiber characteristics, myofibrillar protein isoforms, and meat quality. Livestock Science 122, 105-18.
    • (2009) Livestock Science , vol.122 , pp. 105-118
    • Choi, Y.M.1    Kim, B.C.2
  • 8
    • 0036843496 scopus 로고    scopus 로고
    • Corrgrams: Exploratory displays for correlation matrices
    • Friendly M., (2002) Corrgrams: Exploratory displays for correlation matrices. The American Statistician 56, 316-24.
    • (2002) The American Statistician , vol.56 , pp. 316-324
    • Friendly, M.1
  • 9
    • 44449118921 scopus 로고    scopus 로고
    • Fatty acid-binding proteins: Role in metabolic diseases and potential as drug targets
    • Furuhashi M., &, Hotamisligil G.S., (2008) Fatty acid-binding proteins: role in metabolic diseases and potential as drug targets. Nature Reviews Drug Discovery 7, 489-503.
    • (2008) Nature Reviews Drug Discovery , vol.7 , pp. 489-503
    • Furuhashi, M.1    Hotamisligil, G.S.2
  • 13
    • 0034407201 scopus 로고    scopus 로고
    • Control of post mortem pH decrease in pig muscles: Experimental design and testing of animal models
    • Henckel P., Karlsson A., Oksbjerg N., &, Petersen J.S., (2000) Control of post mortem pH decrease in pig muscles: experimental design and testing of animal models. Meat Science 55, 131-8.
    • (2000) Meat Science , vol.55 , pp. 131-138
    • Henckel, P.1    Karlsson, A.2    Oksbjerg, N.3    Petersen, J.S.4
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
    • Huang D.W., &, Lempicki R.A., (2009) Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protocols 4, 44-57.
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Lempicki, R.A.2
  • 18
    • 84883549061 scopus 로고    scopus 로고
    • Niacin supplementation increases the number of oxidative type i fibers in skeletal muscle of growing pigs
    • Khan M., Ringseis R., Mooren F.C., Krüger K., Most E., &, Eder K., (2013b) Niacin supplementation increases the number of oxidative type I fibers in skeletal muscle of growing pigs. BMC Veterinary Research 9, 177.
    • (2013) BMC Veterinary Research , vol.9 , pp. 177
    • Khan, M.1    Ringseis, R.2    Mooren, F.C.3    Krüger, K.4    Most, E.5    Eder, K.6
  • 20
    • 38649103794 scopus 로고    scopus 로고
    • Comparisons of longissimus muscle metabolic enzymes and muscle fiber types in Korean and Western pig breeds
    • Kim N.K., Lim J.H., Song M.J., Kim O.H., Park B.Y., Kim M.J., Hwang I.H., &, Lee C.S., (2008) Comparisons of longissimus muscle metabolic enzymes and muscle fiber types in Korean and Western pig breeds. Meat Science 78, 455-60.
    • (2008) Meat Science , vol.78 , pp. 455-460
    • Kim, N.K.1    Lim, J.H.2    Song, M.J.3    Kim, O.H.4    Park, B.Y.5    Kim, M.J.6    Hwang, I.H.7    Lee, C.S.8
  • 24
    • 0037102256 scopus 로고    scopus 로고
    • Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres
    • Lin J., Wu H., Tarr P.T., et al,. (2002) Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres. Nature 418, 797-801.
    • (2002) Nature , vol.418 , pp. 797-801
    • Lin, J.1    Wu, H.2    Tarr, P.T.3
  • 25
    • 0032192401 scopus 로고    scopus 로고
    • Insulin downregulates pyruvate dehydrogenase kinase (PDK) mRNA:potential mechanism contributing to increased lipid oxidation in insulin-resistant subjects
    • Majer M., Popov K.M., Harris R.A., Bogardus C., &, Prochazka M., (1998) Insulin downregulates pyruvate dehydrogenase kinase (PDK) mRNA:potential mechanism contributing to increased lipid oxidation in insulin-resistant subjects. Molecular Genetics and Metabolism 65, 181-6.
    • (1998) Molecular Genetics and Metabolism , vol.65 , pp. 181-186
    • Majer, M.1    Popov, K.M.2    Harris, R.A.3    Bogardus, C.4    Prochazka, M.5
  • 26
    • 79957665988 scopus 로고    scopus 로고
    • Microarrays, deep sequencing and the true measure of the transcriptome
    • Malone J.H., &, Oliver B., (2011) Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biology 9, 34.
    • (2011) BMC Biology , vol.9 , pp. 34
    • Malone, J.H.1    Oliver, B.2
  • 27
    • 67149139514 scopus 로고    scopus 로고
    • Skeletal muscle fibre plasticity in response to selected environmental and physiological stimuli
    • Matsakas A., &, Patel K., (2009) Skeletal muscle fibre plasticity in response to selected environmental and physiological stimuli. Histology and Histopathology 24, 611-29.
    • (2009) Histology and Histopathology , vol.24 , pp. 611-629
    • Matsakas, A.1    Patel, K.2
  • 28
    • 58549096547 scopus 로고    scopus 로고
    • Differentially expressed transcripts in adipose tissue between Korean native pig and Yorkshire breeds
    • Moon J.K., Kim K.S., Kim J.J., Choi B.H., Cho B.W., Kim T.H., &, Lee C.K., (2009) Differentially expressed transcripts in adipose tissue between Korean native pig and Yorkshire breeds. Animal Genetics 40, 115-8.
    • (2009) Animal Genetics , vol.40 , pp. 115-118
    • Moon, J.K.1    Kim, K.S.2    Kim, J.J.3    Choi, B.H.4    Cho, B.W.5    Kim, T.H.6    Lee, C.K.7
  • 30
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U., Wang Z., Waern K., Shou C., Raha D., Gerstein M., &, Snyder M., (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-9.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 31
    • 84898860421 scopus 로고    scopus 로고
    • Application of the microarray technology to the transcriptional analysis of muscle phenotypes in pigs
    • Pena R.N., Quintanilla R., Manunza A., Gallardo D., Casellas J., &, Amills M., (2014) Application of the microarray technology to the transcriptional analysis of muscle phenotypes in pigs. Animal Genetics 45, 311-21.
    • (2014) Animal Genetics , vol.45 , pp. 311-321
    • Pena, R.N.1    Quintanilla, R.2    Manunza, A.3    Gallardo, D.4    Casellas, J.5    Amills, M.6
  • 32
    • 33644509230 scopus 로고    scopus 로고
    • Quality pork genes and meat production
    • Plastow G.S., Carrion D., Gil M., et al,. (2005) Quality pork genes and meat production. Meat Science 70, 409-21.
    • (2005) Meat Science , vol.70 , pp. 409-421
    • Plastow, G.S.1    Carrion, D.2    Gil, M.3
  • 33
    • 84882652578 scopus 로고    scopus 로고
    • Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross
    • Ramayo-Caldas Y., Mercadé A., Castelló A., et al,. (2012) Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross. Journal of Animal Science 90, 2883-93.
    • (2012) Journal of Animal Science , vol.90 , pp. 2883-2893
    • Ramayo-Caldas, Y.1    Mercadé, A.2    Castelló, A.3
  • 34
    • 0033990048 scopus 로고    scopus 로고
    • Primer 3 on the WWW for general users and for biologist programmers
    • Rozen S., &, Skaletsky H., (2000) primer 3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology 132, 365-86.
    • (2000) Methods in Molecular Biology , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 35
    • 70449346397 scopus 로고    scopus 로고
    • Breed difference and regulation of the porcine adipose triglyceride lipase and hormone sensitive lipase by TNF alpha
    • Shan T., Wu T., Reng Y., &, Wang Y., (2009) Breed difference and regulation of the porcine adipose triglyceride lipase and hormone sensitive lipase by TNF alpha. Animal Genetics 40, 863-70.
    • (2009) Animal Genetics , vol.40 , pp. 863-870
    • Shan, T.1    Wu, T.2    Reng, Y.3    Wang, Y.4
  • 36
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J., &, Hanlee J., (2008) Next-generation DNA sequencing. Nature Biotechnology 26, 1135-45.
    • (2008) Nature Biotechnology , vol.26 , pp. 1135-1145
    • Shendure, J.1    Hanlee, J.2
  • 37
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • Sultan M., Schulz M.H., Richard H., et al,. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321, 956-60.
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1    Schulz, M.H.2    Richard, H.3
  • 41
    • 57749195712 scopus 로고    scopus 로고
    • RNA-seq: A revolutionary tool for transcriptomics
    • Wang Z., Gerstein M., &, Snyder M., (2009) RNA-seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 10, 57-63.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 42
    • 75249095274 scopus 로고    scopus 로고
    • Degseq: An r package for identifying differentially expressed genes from RNA-seq data
    • Wang L., Feng Z., Wang X., &, Zhang X., (2010) degseq: an r package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26, 136-8.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Zhang, X.4
  • 44
    • 28544438180 scopus 로고    scopus 로고
    • PGC-1alpha coactivates PDK4 gene expression via the orphan nuclear receptor ERRalpha: A mechanism for transcriptional control of muscle glucose metabolism
    • Wende A.R., Huss J.M., Schaeffer P.J., Giguere V., &, Kelly D.P., (2006) PGC-1alpha coactivates PDK4 gene expression via the orphan nuclear receptor ERRalpha: a mechanism for transcriptional control of muscle glucose metabolism. Molecular and Cellular Biology 25, 10684-94.
    • (2006) Molecular and Cellular Biology , vol.25 , pp. 10684-10694
    • Wende, A.R.1    Huss, J.M.2    Schaeffer, P.J.3    Giguere, V.4    Kelly, D.P.5
  • 45
    • 77949269022 scopus 로고    scopus 로고
    • Porcine CSRP3: Polymorphism and association analyses with meat quality traits and comparative analyses with CSRP1 and CSRP2
    • Xu X.W., Qiu H.F., Du Z.Q., Fan B., Rothschild M.F., Yuan F., &, Liu B., (2010) Porcine CSRP3: polymorphism and association analyses with meat quality traits and comparative analyses with CSRP1 and CSRP2. Molecular Biology Reports 37, 451-9.
    • (2010) Molecular Biology Reports , vol.37 , pp. 451-459
    • Xu, X.W.1    Qiu, H.F.2    Du, Z.Q.3    Fan, B.4    Rothschild, M.F.5    Yuan, F.6    Liu, B.7


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