The Gene Ontology project in 2008

Nucleic Acids Research

Volumn 36, Issue SUPPL. 1, 2008, Pages

  Harris, Midori A ^a   Deegan, Jennifer I ^a   Ireland, Amelia ^b   Lomax, Jane ^b   Ashburner, Michael ^c   Tweedie, Susan ^c   Carbon, Seth ^d   Lewis, Suzanna ^d   Mungall, Chris ^d   Day Richter, John ^d   Eilbeck, Karen ^e   Blake, Judith A ^f   Bult, Carol ^f   Diehl, Alexander D ^f   Dolan, Mary ^f   Drabkin, Harold ^f   Eppig, Janan T ^f   Hill, David P ^f   Ni, Li ^f   Ringwald, Martin ^f   Balakrishnan, Rama ^g   Binkley, Gail ^g   Cherry, J Michael ^g   Christie, Karen R ^g   Costanzo, Maria C ^g   Dong, Qing ^g   Engel, Stacia R ^g   Fisk, Dianna G ^g   Hirschman, Jodi E ^g   Hitz, Benjamin C ^g   Hong, Eurie L ^g   Krieger, Cynthia J ^g   Miyasato, Stuart R ^g   Nash, Robert S ^g   Park, Julie ^g   Skrzypek, Marek S ^g   Weng, Shuai ^g   Wong, Edith D ^g   Zhu, Kathy K ^g   Botstein, David ^h   Dolinski, Kara ^h   Livstone, Michael S ^h   Oughtred, Rose ^h   Berardini, Tanya ⁱ   Li, Donghui ⁱ   Rhee, Seung Y ⁱ   Apweiler, Rolf ^j   Barrell, Daniel ^j   Camon, Evelyn ^j   Dimmer, Emily ^j   Huntley, Rachael ^j   Mulder, Nicola ^j   Khodiyar, Varsha K ^k   Lovering, Ruth C ^k   Povey, Sue ^k   Chisholm, Rex ^l   Fey, Petra ^l   Gaudet, Pascale ^l   Kibbe, Warren ^l   Kishore, Ranjana ^m   Schwarz, Erich M ^m   Sternberg, Paul ^m   Van Auken, Kimberly ^m   Giglio, Michelle Gwinn ⁿ   Hannick, Linda ⁿ   Wortman, Jennifer ⁿ   Aslett, Martin ^o   Berriman, Matthew ^o   Wood, Valerie ^o   Jacob, Howard ^p   Laulederkind, Stan ^p   Petri, Victoria ^p   Shimoyama, Mary ^p   Smith, Jennifer ^p   Twigger, Simon ^p   Jaiswal, Pankaj ^q   Seigfried, Trent ^r   Howe, Doug ^s   Westerfield, Monte ^s   Collmer, Candace ^t   Torto Alalibo, Trudy ^u   Feltrin, Erika ^v   Valle, Giorgio ^v   Bromberg, Susan ^w   Burgess, Shane ^w   McCarthy, Fiona ^w   more..

^a Née Clark   (United Kingdom)

^b EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^e UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^f JACKSON LABORATORY   (United States)

^g STANFORD UNIVERSITY   (United States)

^h PRINCETON UNIVERSITY   (United States)

ⁱ GEOPHYSICAL LABORATORY   (United States)

^j EBI   (United Kingdom)

^k UNIVERSITY COLLEGE LONDON   (United Kingdom)

^l NORTHWESTERN UNIVERSITY   (United States)

^m CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

ⁿ J CRAIG VENTER INSTITUTE   (United States)

^o WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^p MEDICAL COLLEGE OF WISCONSIN   (United States)

^q Department of Obstetrics Gynecology   (United States)

^r UDSA ARS   (United States)

^s UNIVERSITY OF OREGON   (United States)

^t WELLS COLLEGE   (United States)

^u VIRGINIA BIOINFORMATICS INSTITUTE   (United States)

^v UNIVERSITY OF PADOVA   (Italy)

^w MISSISSIPPI STATE UNIVERSITY   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

ARTICLE; BIOINFORMATICS; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER MODEL; COMPUTER PROGRAM; GENE SEQUENCE; GENETIC DATABASE; GENOME ANALYSIS; INFORMATION RETRIEVAL; PRIORITY JOURNAL; PROGRAM DEVELOPMENT; QUALITY CONTROL; REFERENCE DATABASE;

EID: 84984996500     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm883     Document Type: Article

References (18)

1. Gruber, T.R. (1993) A translation approach to portable ontology specifications. Knowl. Acq., 5, 199-220.
2. Jones, D.M. and Paton, R. (1999) Toward principles for the representation of hierarchical knowledge in formal ontologies. Data Knowl. Eng., 31, 99-113.
3. Stevens, R., Goble, C.A. and Bechhofer, S. (2000) Ontology-based knowledge representation for bioinformatics. Brief Bioinform., 1, 398-414.
4. Schulze-Kremer, S. (2002) Ontologies for molecular biology and bioinformatics. In Silico Biol., 2, 179-193.
5. The Gene Ontology Consortium (2000) Gene Ontology: Tool for the unification of biology. Nat. Genet., 25, 25-29.
6. The Gene Ontology Consortium (2001) Creating the Gene Ontology resource: design and implementation. Genome Res., 11, 1425-1433.
7. Blake, J.A. and Harris, M.A. (2003) The Gene Ontology project: structurcd vocabularies for molecular biology and their application to genome and expression analysis. In Baxevanis, A.D., Davison, D.B., Page, R.D.M., Petsko, G.A., Stein., L.-D. and Stormo, G. (eds), Current Protocols in Bioinformatics, John Wiley & Sons, New York.
8. The Gene Ontology Consortium (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
9. Harris, M.A., Lomax, J., Ireland, A. and Clark, J.I. (2005) The Gene Ontology project. In Subramaniam, S. (ed), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, John Wiley & Sons, New York.
10. Lewis, S.E. (2005) Gene Ontology: Looking backwards and forwards. Genome Biol., 6, 103.
11. The Gene Ontology Consortium (2006) The Gene Ontology (GO) project in 2006. Nucleic Acids Res., 34, D322-D326.
12. Eilbeck, K. and Lewis, S.E. (2004) Sequence Ontology annotation guide. Compar. Funct. Genom., 5, 642-647.
13. Eilbeck, K., Lewis, S.E., Mungall, C.J., Yandell, M., Stein, L., Durbin, R. and Ashburner, M. (2005) The Sequence Ontology: A tool for the unification of genome annotations. Genome Biol., 6, R44.
14. Diehl, A.D., Lee, J.A., Scheuermann, R.H. and Blake, J.A. (2007) Ontology development for biological systems: Immunology. Bioinformatics, 23, 913-915.
15. Day-Richter, J., Harris, M.A., Haendel, M. and Lewis, S. (2007) OBO-Edit - an ontology editor for biologists. Bioinformatics, 23, 2198-2200.
16. Mungall, C.J. and Emmert, D.B. and the FlyBase Consortium (2007) A Chado case study: An ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23 i337-i346.
17. Reeves, G.A. and Thornton,J.M. (2006) Integrating biological data through the genome. Hum. Mol. Genet., 15 (Spec No. 1), R81-R87.
18. McCarthy, F.M., Bridges, S.M., Wang, N., Magee, G.B., Williams, W.P., Luthe, D.S. and Burgess, S.C. (2007) AgBase: A unified resource for functional analysis in agriculture. Nucleic Acids Res., 35, D599-D603.