메뉴 건너뛰기




Volumn 110, Issue 34, 2013, Pages 14006-14011

Erratum: Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population (Proceedings of the National Academy of Sciences of the United States of America (2013) 110(14006-14011) DOI:10.1073/pnas.1222569110);Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population

Author keywords

Aerobic regulation; Metabolism; Pathway utilization; Protein noise; Systems biology

Indexed keywords

CYTOCHROME C OXIDASE; LACTATE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; ACETIC ACID DERIVATIVE; CARBON DIOXIDE;

EID: 84882748254     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1323512111     Document Type: Erratum
Times cited : (82)

References (31)
  • 1
    • 84859641038 scopus 로고    scopus 로고
    • Using gene expression noise to understand gene regulation
    • Munsky B, Neuert G, van Oudenaarden A (2012) Using gene expression noise to understand gene regulation. Science 336(6078):183-187.
    • (2012) Science , vol.336 , Issue.6078 , pp. 183-187
    • Munsky, B.1    Neuert, G.2    Van Oudenaarden, A.3
  • 2
    • 0034608143 scopus 로고    scopus 로고
    • Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks
    • Paulsson J, Ehrenberg M (2000) Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks. Phys Rev Lett 84(23):5447-5450.
    • (2000) Phys Rev Lett , vol.84 , Issue.23 , pp. 5447-5450
    • Paulsson, J.1    Ehrenberg, M.2
  • 3
    • 33750247101 scopus 로고    scopus 로고
    • Linking stochastic dynamics to population distribution: An analytical framework of gene expression
    • Friedman N, Cai L, Xie XS (2006) Linking stochastic dynamics to population distribution: An analytical framework of gene expression. Phys Rev Lett 97(16):168302.
    • (2006) Phys Rev Lett , vol.97 , Issue.16 , pp. 168302
    • Friedman, N.1    Cai, L.2    Xie, X.S.3
  • 4
    • 56249130793 scopus 로고    scopus 로고
    • Analytical distributions for stochastic gene expression
    • Shahrezaei V, Swain PS (2008) Analytical distributions for stochastic gene expression. Proc Natl Acad Sci USA 105(45):17256-17261.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.45 , pp. 17256-17261
    • Shahrezaei, V.1    Swain, P.S.2
  • 5
    • 77950646741 scopus 로고    scopus 로고
    • Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions
    • Kim PJ, Price ND (2010) Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions. Phys Rev Lett 104(14):148103.
    • (2010) Phys Rev Lett , vol.104 , Issue.14 , pp. 148103
    • Kim, P.J.1    Price, N.D.2
  • 6
    • 77955102352 scopus 로고    scopus 로고
    • Quantifying E coli proteome and transcriptome with singlemolecule sensitivity in single cells
    • Taniguchi Y, et al. (2010) Quantifying E. coli proteome and transcriptome with singlemolecule sensitivity in single cells. Science 329(5991):533-538.
    • (2010) Science , vol.329 , Issue.5991 , pp. 533-538
    • Taniguchi, Y.1
  • 8
    • 84858439602 scopus 로고    scopus 로고
    • Constraining the metabolic genotypephenotype relationship using a phylogeny of in silico methods
    • Lewis NE, Nagarajan H, Palsson BO (2012) Constraining the metabolic genotypephenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 10(4):291-305.
    • (2012) Nat Rev Microbiol , vol.10 , Issue.4 , pp. 291-305
    • Lewis, N.E.1    Nagarajan, H.2    Palsson, B.O.3
  • 9
    • 79551662521 scopus 로고    scopus 로고
    • Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0
    • Schellenberger J, et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0. Nat Protoc 6(9):1290-1307.
    • (2011) Nat Protoc , vol.6 , Issue.9 , pp. 1290-1307
    • Schellenberger, J.1
  • 10
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: Evaluating the consequences of constraints
    • Price ND, Reed JL, Palsson BØ (2004) Genome-scale models of microbial cells: Evaluating the consequences of constraints. Nat Rev Microbiol 2(11):886-897.
    • (2004) Nat Rev Microbiol , vol.2 , Issue.11 , pp. 886-897
    • Price, N.D.1    Reed, J.L.2    Palsson, B.Ø.3
  • 12
    • 80054069179 scopus 로고    scopus 로고
    • A comprehensive genome-scale reconstruction of Escherichia coli metabolism - 2011
    • Orth JD, et al. (2011) A comprehensive genome-scale reconstruction of Escherichia coli metabolism - 2011. Mol Syst Biol 7:535.
    • (2011) Mol Syst Biol , vol.7 , pp. 535
    • Orth, J.D.1
  • 13
    • 63549148162 scopus 로고    scopus 로고
    • Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: A knowledge base, its mathematical formulation, and its functional characterization
    • Thiele I, Jamshidi N, Fleming R, Palsson B (2009) Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: A knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput Biol 5(3):e1000312.
    • (2009) PLoS Comput Biol , vol.5 , Issue.3
    • Thiele, I.1    Jamshidi, N.2    Fleming, R.3    Palsson, B.4
  • 14
    • 84979279765 scopus 로고    scopus 로고
    • Human metabolic network: Reconstruction, simulation, and applications in systems biology
    • Wu M, Chan C (2012) Human metabolic network: Reconstruction, simulation, and applications in systems biology. Metabolites 2(1):242-253.
    • (2012) Metabolites , vol.2 , Issue.1 , pp. 242-253
    • Wu, M.1    Chan, C.2
  • 15
    • 78049255973 scopus 로고    scopus 로고
    • Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis
    • Chandrasekaran S, Price ND (2010) Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis. Proc Natl Acad Sci USA 107(41):17845-17850.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.41 , pp. 17845-17850
    • Chandrasekaran, S.1    Price, N.D.2
  • 16
    • 84870933131 scopus 로고    scopus 로고
    • Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE
    • Wang Y, Eddy JA, Price ND (2012) Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. BMC Syst Biol 6:153.
    • (2012) BMC Syst Biol , vol.6 , pp. 153
    • Wang, Y.1    Eddy, J.A.2    Price, N.D.3
  • 17
    • 2342648924 scopus 로고    scopus 로고
    • Integrating highthroughput and computational data elucidates bacterial networks
    • Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO (2004) Integrating highthroughput and computational data elucidates bacterial networks. Nature 429(6987): 92-96.
    • (2004) Nature , vol.429 , Issue.6987 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 18
    • 84864258618 scopus 로고    scopus 로고
    • A whole-cell computational model predicts phenotype from genotype
    • Karr JR, et al. (2012) A whole-cell computational model predicts phenotype from genotype. Cell 150(2):389-401.
    • (2012) Cell , vol.150 , Issue.2 , pp. 389-401
    • Karr, J.R.1
  • 20
    • 78651330012 scopus 로고    scopus 로고
    • BRENDA, the enzyme information system in 2011
    • Scheer M, et al. (2011) BRENDA, the enzyme information system in 2011. Nucleic Acids Res 39(Database issue):D670-D676.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISSUE
    • Scheer, M.1
  • 21
    • 84862159261 scopus 로고    scopus 로고
    • Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
    • Orth JD, Palsson B (2012) Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions. BMC Syst Biol 6:30.
    • (2012) BMC Syst Biol , vol.6 , pp. 30
    • Orth, J.D.1    Palsson, B.2
  • 22
    • 80052006136 scopus 로고    scopus 로고
    • Optical measurement of cycle-dependent cell growth
    • Mir M, et al. (2011) Optical measurement of cycle-dependent cell growth. Proc Natl Acad Sci USA 108(32):13124-13129.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.32 , pp. 13124-13129
    • Mir, M.1
  • 23
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz MB, Levine AJ, Siggia ED, Swain PS (2002) Stochastic gene expression in a single cell. Science 297(5584):1183-1186.
    • (2002) Science , vol.297 , Issue.5584 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 24
    • 0036790975 scopus 로고    scopus 로고
    • Intrinsic and extrinsic contributions to stochasticity in gene expression
    • Swain PS, Elowitz MB, Siggia ED (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci USA 99(20):12795-12800.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.20 , pp. 12795-12800
    • Swain, P.S.1    Elowitz, M.B.2    Siggia, E.D.3
  • 25
    • 65349142617 scopus 로고    scopus 로고
    • Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation
    • Barrett CL, Herrgard MJ, Palsson B (2009) Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation. BMC Syst Biol 3:30.
    • (2009) BMC Syst Biol , vol.3 , pp. 30
    • Barrett, C.L.1    Herrgard, M.J.2    Palsson, B.3
  • 26
    • 0025264582 scopus 로고
    • Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations
    • Luli GW, Strohl WR (1990) Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 56(4):1004-1011.
    • (1990) Appl Environ Microbiol , vol.56 , Issue.4 , pp. 1004-1011
    • Luli, G.W.1    Strohl, W.R.2
  • 27
  • 28
    • 0025063286 scopus 로고
    • A radical-chemical route to acetyl-CoA: The anaerobically induced pyruvate formate-lyase system of Escherichia coli
    • Knappe J, Sawers G (1990) A radical-chemical route to acetyl-CoA: The anaerobically induced pyruvate formate-lyase system of Escherichia coli. FEMS Microbiol Rev 6(4): 383-398.
    • (1990) FEMS Microbiol Rev , vol.6 , Issue.4 , pp. 383-398
    • Knappe, J.1    Sawers, G.2
  • 29
    • 0018818947 scopus 로고
    • Bacterial lactate dehydrogenases
    • Garvie EI (1980) Bacterial lactate dehydrogenases. Microbiol Rev 44(1):106-139.
    • (1980) Microbiol Rev , vol.44 , Issue.1 , pp. 106-139
    • Garvie, E.I.1
  • 30
    • 38649096569 scopus 로고    scopus 로고
    • Proteome-level responses of Escherichia coli to long-chain fatty acids and use of fatty acid inducible promoter in protein production
    • Han MJ, Lee JW, Lee SY, Yoo JS (2008) Proteome-level responses of Escherichia coli to long-chain fatty acids and use of fatty acid inducible promoter in protein production. J Biomed Biotechnol 2008:735101.
    • (2008) J Biomed Biotechnol , vol.2008 , pp. 735101
    • Han, M.J.1    Lee, J.W.2    Lee, S.Y.3    Yoo, J.S.4
  • 31
    • 42049108914 scopus 로고    scopus 로고
    • Protein abundance profiling of the Escherichia coli cytosol
    • Ishihama Y, et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9:102.
    • (2008) BMC Genomics , vol.9 , pp. 102
    • Ishihama, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.