메뉴 건너뛰기




Volumn 7, Issue FEB, 2016, Pages

Using "omics" and integrated multi-omics approaches to guide probiotic selection to mitigate chytridiomycosis and other emerging infectious diseases

(18)  Rebollar, Eria A a   Antwis, Rachael E b,c,d   Becker, Matthew H e   Belden, Lisa K f   Bletz, Molly C g   Brucker, Robert M h   Harrison, Xavier A c   Hughey, Myra C f   Kueneman, Jordan G i   Loudon, Andrew H j   McKenzie, Valerie i   Medina, Daniel f   Minbiole, Kevin P C k   Rollins Smith, Louise A l   Walke, Jenifer B f   Weiss, Sophie m   Woodhams, Douglas C n   Harris, Reid N a  


Author keywords

Amphibians; Emerging diseases; Metabolomics; Metagenomics; Probiotics; Transcriptomics

Indexed keywords

PROBIOTIC AGENT;

EID: 84962077744     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00068     Document Type: Review
Times cited : (100)

References (201)
  • 2
    • 84930939836 scopus 로고    scopus 로고
    • Probiotics and prebiotics associated with aquaculture: a review
    • Akhter, N., Wu, B., Memon, A. M., and Mohsin, M. (2015). Probiotics and prebiotics associated with aquaculture: a review. Fish Shellfish Immunol. 45, 733-741. doi: 10.1016/j.fsi.2015.05.038
    • (2015) Fish Shellfish Immunol , vol.45 , pp. 733-741
    • Akhter, N.1    Wu, B.2    Memon, A.M.3    Mohsin, M.4
  • 3
    • 84926331204 scopus 로고    scopus 로고
    • Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting
    • Albanese, D., De Filippo, C., Cavalieri, D., and Donati, C. (2015). Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting. PLoS Comput. Biol. 11:e1004186. doi: 10.1371/journal.pcbi.1004186
    • (2015) PLoS Comput. Biol , vol.11
    • Albanese, D.1    De Filippo, C.2    Cavalieri, D.3    Donati, C.4
  • 4
    • 84871297843 scopus 로고    scopus 로고
    • Next-generation proteomics: towards an integrative view of proteome dynamics
    • Altelaar, A. F. M., Munoz, J., and Heck, A. J. R. (2012). Next-generation proteomics: towards an integrative view of proteome dynamics. Nat. Rev. Genet. 14, 35-48. doi: 10.1038/nrg3356
    • (2012) Nat. Rev. Genet , vol.14 , pp. 35-48
    • Altelaar, A.F.M.1    Munoz, J.2    Heck, A.J.R.3
  • 5
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11:R106. doi: 10.1186/gb-2010-11-10-r106
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 6
    • 84930031515 scopus 로고    scopus 로고
    • Amphibian symbiotic bacteria do not show universal ability to inhibit growth of the global pandemic lineage of Batrachochytrium dendrobatidis
    • Antwis, R. E., Preziosi, R. F., Harrison, X. A., and Garner, T. W. J. (2015). Amphibian symbiotic bacteria do not show universal ability to inhibit growth of the global pandemic lineage of Batrachochytrium dendrobatidis. Appl. Environ. Microbiol. 81, 3706-3711. doi: 10.1128/AEM.00010-15
    • (2015) Appl. Environ. Microbiol , vol.81 , pp. 3706-3711
    • Antwis, R.E.1    Preziosi, R.F.2    Harrison, X.A.3    Garner, T.W.J.4
  • 8
    • 84855949949 scopus 로고    scopus 로고
    • Using network analysis to explore co-occurrence patterns in soil microbial communities
    • Barberán, A., Bates, S. T., Casamayor, E. O., and Fierer, N. (2012a). Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J. 6, 343-351. doi: 10.1038/ismej.2011.119
    • (2012) ISME J , vol.6 , pp. 343-351
    • Barberán, A.1    Bates, S.T.2    Casamayor, E.O.3    Fierer, N.4
  • 9
    • 84859614217 scopus 로고    scopus 로고
    • Exploration of community traits as ecological markers in microbial metagenomes
    • Barberán, A., Fernández-Guerra, A., Bohannan, B. J. M., and Casamayor, E. O. (2012b). Exploration of community traits as ecological markers in microbial metagenomes. Mol. Ecol. 21, 1909-1917. doi: 10.1111/j.1365-294X.2011.05383.x
    • (2012) Mol. Ecol , vol.21 , pp. 1909-1917
    • Barberán, A.1    Fernández-Guerra, A.2    Bohannan, B.J.M.3    Casamayor, E.O.4
  • 10
    • 84940187621 scopus 로고    scopus 로고
    • Future challenges and perspectives for applying microbial biotechnology in sustainable agriculture based on a better understanding of plant-microbiome interactions
    • Barea, J. M. (2015). Future challenges and perspectives for applying microbial biotechnology in sustainable agriculture based on a better understanding of plant-microbiome interactions. J. Soil Sci. Plant Nutr. 15, 261-282. doi: 10.4067/S0718-95162015005000021
    • (2015) J. Soil Sci. Plant Nutr , vol.15 , pp. 261-282
    • Barea, J.M.1
  • 11
    • 84942380023 scopus 로고    scopus 로고
    • Susceptibility of amphibians to chytridiomycosis is associated with MHC class II conformation
    • Bataille, A., Cashins, S. D., Grogan, L., Skerratt, L. F., Hunter, D., Mcfadden, M., et al. (2015). Susceptibility of amphibians to chytridiomycosis is associated with MHC class II conformation. Proc. R. Soc. B Biol. Sci. 282:20143127. doi: 10.1098/rspb.2014.3127
    • (2015) Proc. R. Soc. B Biol. Sci , vol.282
    • Bataille, A.1    Cashins, S.D.2    Grogan, L.3    Skerratt, L.F.4    Hunter, D.5    Mcfadden, M.6
  • 12
    • 84882455505 scopus 로고    scopus 로고
    • Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians
    • Bataille, A., Fong, J. J., Cha, M., Wogan, G. O. U., Baek, H. J., Lee, H., et al. (2013). Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians. Mol. Ecol. 22, 4196-4209. doi: 10.1111/mec.12385
    • (2013) Mol. Ecol , vol.22 , pp. 4196-4209
    • Bataille, A.1    Fong, J.J.2    Cha, M.3    Wogan, G.O.U.4    Baek, H.J.5    Lee, H.6
  • 13
    • 70350475894 scopus 로고    scopus 로고
    • The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus
    • Becker, M. H., Brucker, R. M., Schwantes, C. R., Harris, R. N., and Minbiole, K. P. C. (2009). The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus. Appl. Environ. Microbiol. 75, 6635-6638. doi: 10.1128/AEM.01294-09
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 6635-6638
    • Becker, M.H.1    Brucker, R.M.2    Schwantes, C.R.3    Harris, R.N.4    Minbiole, K.P.C.5
  • 14
    • 85028122897 scopus 로고    scopus 로고
    • Towards a better understanding of the use of probiotics for preventing chytridiomycosis in Panamanian golden frogs
    • Becker, M. H., Harris, R. N., Minbiole, K. P. C., Schwantes, C. R., Rollins-Smith, L. A., Reinert, L. K., et al. (2011). Towards a better understanding of the use of probiotics for preventing chytridiomycosis in Panamanian golden frogs. Ecohealth 8, 501-506. doi: 10.1007/s10393-012-0743-0
    • (2011) Ecohealth , vol.8 , pp. 501-506
    • Becker, M.H.1    Harris, R.N.2    Minbiole, K.P.C.3    Schwantes, C.R.4    Rollins-Smith, L.A.5    Reinert, L.K.6
  • 15
    • 84925307993 scopus 로고    scopus 로고
    • Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus
    • Becker, M. H., Walke, J. B., Cikanek, S., Savage, A. E., Mattheus, N., Santiago, C. N., et al. (2015a). Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus. Proc. R. Soc. B 282:20142881. doi: 10.1098/rspb.2014.2881
    • (2015) Proc. R. Soc. B , vol.282
    • Becker, M.H.1    Walke, J.B.2    Cikanek, S.3    Savage, A.E.4    Mattheus, N.5    Santiago, C.N.6
  • 16
    • 84925603264 scopus 로고    scopus 로고
    • Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogen Batrachochytrium dendrobatidis
    • Becker, M. H., Walke, J. B., Murrill, L., Woodhams, D. C., Reinert, L. K., Rollins-Smith, L. A., et al. (2015b). Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogen Batrachochytrium dendrobatidis. Mol. Ecol. 24, 1628-1641. doi: 10.1111/mec.13135
    • (2015) Mol. Ecol , vol.24 , pp. 1628-1641
    • Becker, M.H.1    Walke, J.B.2    Murrill, L.3    Woodhams, D.C.4    Reinert, L.K.5    Rollins-Smith, L.A.6
  • 17
    • 84875531225 scopus 로고    scopus 로고
    • Screening bacterial metabolites for inhibitory effects against Batrachochytrium dendrobatidis using a spectrophotometric assay
    • Bell, S. C., Alford, R. A., Garland, S., Padilla, G., and Thomas, A. D. (2013). Screening bacterial metabolites for inhibitory effects against Batrachochytrium dendrobatidis using a spectrophotometric assay. Dis. Aquat. Organ. 103, 77-85. doi: 10.3354/dao02560
    • (2013) Dis. Aquat. Organ , vol.103 , pp. 77-85
    • Bell, S.C.1    Alford, R.A.2    Garland, S.3    Padilla, G.4    Thomas, A.D.5
  • 18
    • 79959607043 scopus 로고    scopus 로고
    • Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California
    • Beman, J. M., Steele, J. A., and Fuhrman, J. A. (2011). Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J. 5, 1077-1085. doi: 10.1038/ismej.2010.204
    • (2011) ISME J , vol.5 , pp. 1077-1085
    • Beman, J.M.1    Steele, J.A.2    Fuhrman, J.A.3
  • 19
    • 13144266734 scopus 로고    scopus 로고
    • Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America
    • Berger, L., Speare, R., Daszak, P., Green, D. E., Cunningham, A. A., Goggin, C. L., et al. (1998). Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America. Proc. Natl. Acad. Sci. U.S.A. 95, 9031-9036. doi: 10.1073/pnas.95.15.9031
    • (1998) Proc. Natl. Acad. Sci. U.S.A , vol.95 , pp. 9031-9036
    • Berger, L.1    Speare, R.2    Daszak, P.3    Green, D.E.4    Cunningham, A.A.5    Goggin, C.L.6
  • 20
    • 84862249583 scopus 로고    scopus 로고
    • Novel techniques and findings in the study of plant microbiota: search for plant probiotics
    • Berlec, A. (2012). Novel techniques and findings in the study of plant microbiota: search for plant probiotics. Plant Sci. 19, 96-102. doi: 10.1016/j.plantsci.2012.05.010
    • (2012) Plant Sci , vol.19 , pp. 96-102
    • Berlec, A.1
  • 21
    • 84900523852 scopus 로고    scopus 로고
    • Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity
    • Bhardwaj, D., Ansari, M., Sahoo, R., and Tuteja, N. (2014). Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity. Microb. Cell Fact. 13:66. doi: 10.1186/1475-2859-13-66
    • (2014) Microb. Cell Fact , vol.13 , pp. 66
    • Bhardwaj, D.1    Ansari, M.2    Sahoo, R.3    Tuteja, N.4
  • 23
    • 84877919659 scopus 로고    scopus 로고
    • Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use
    • Bletz, M. C., Loudon, A. H., Becker, M. H., Bell, S. C., Woodhams, D. C., Minbiole, K. P. C., et al. (2013). Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use. Ecol. Lett. 16, 807-820. doi: 10.1111/ele.12099
    • (2013) Ecol. Lett , vol.16 , pp. 807-820
    • Bletz, M.C.1    Loudon, A.H.2    Becker, M.H.3    Bell, S.C.4    Woodhams, D.C.5    Minbiole, K.P.C.6
  • 24
    • 84923810602 scopus 로고    scopus 로고
    • Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar
    • Bletz, M. C., Rosa, G. M., Crottini, A., Courtois, E. A., Schmeller, D. S., Rabibisoa, N. E. A., et al. (2015). Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar. Nat. Commun. 5:8633. doi: 10.1038/srep08633
    • (2015) Nat. Commun , vol.5 , pp. 8633
    • Bletz, M.C.1    Rosa, G.M.2    Crottini, A.3    Courtois, E.A.4    Schmeller, D.S.5    Rabibisoa, N.E.A.6
  • 25
    • 84923012086 scopus 로고    scopus 로고
    • Treatment of urodelans based on temperature dependent infection dynamics of Batrachochytrium salamandrivorans
    • Blooi, M., Martel, A., Haesebrouck, F., Vercammen, F., Bonte, D., and Pasmans, F. (2015). Treatment of urodelans based on temperature dependent infection dynamics of Batrachochytrium salamandrivorans. Sci. Rep. 4, 35-38. doi: 10.1038/srep08037
    • (2015) Sci. Rep , vol.4 , pp. 35-38
    • Blooi, M.1    Martel, A.2    Haesebrouck, F.3    Vercammen, F.4    Bonte, D.5    Pasmans, F.6
  • 26
    • 84908478170 scopus 로고    scopus 로고
    • Major histocompatibility complex class IIb polymorphism influences gut microbiota composition and diversity
    • Bolnick, D. I., Snowberg, L. K., Caporaso, J. G., Lauber, C., Knight, R., and Stutz, W. E. (2014). Major histocompatibility complex class IIb polymorphism influences gut microbiota composition and diversity. Mol. Ecol. 23, 4831-4845. doi: 10.1111/mec.12846
    • (2014) Mol. Ecol , vol.23 , pp. 4831-4845
    • Bolnick, D.I.1    Snowberg, L.K.2    Caporaso, J.G.3    Lauber, C.4    Knight, R.5    Stutz, W.E.6
  • 27
    • 84866986817 scopus 로고    scopus 로고
    • Computational systems biology and in silico modeling of the human microbiome
    • Borenstein, E. (2012). Computational systems biology and in silico modeling of the human microbiome. Brief. Bioinform. 13, 769-780. doi: 10.1093/bib/bbs022
    • (2012) Brief. Bioinform , vol.13 , pp. 769-780
    • Borenstein, E.1
  • 28
    • 59649085782 scopus 로고    scopus 로고
    • Topological signatures of species interactions in metabolic networks
    • Borenstein, E., and Feldman, M. W. (2009). Topological signatures of species interactions in metabolic networks. J. Comput. Biol. 16, 191-200. doi: 10.1089/cmb.2008.06TT
    • (2009) J. Comput. Biol , vol.16 , pp. 191-200
    • Borenstein, E.1    Feldman, M.W.2
  • 29
    • 55749087868 scopus 로고    scopus 로고
    • Large-scale reconstruction and phylogenetic analysis of metabolic environments
    • Borenstein, E., Kupiec, M., Feldman, M. W., and Ruppin, E. (2008). Large-scale reconstruction and phylogenetic analysis of metabolic environments. Proc. Natl. Acad. Sci. U.S.A. 105, 14482-14487. doi: 10.1073/pnas.0806162105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 14482-14487
    • Borenstein, E.1    Kupiec, M.2    Feldman, M.W.3    Ruppin, E.4
  • 31
    • 84856293856 scopus 로고    scopus 로고
    • The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities
    • Brucker, R. M., and Bordenstein, S. R. (2012). The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities. Evolution 66, 349-362. doi: 10.1111/j.1558-5646.2011.01454.x
    • (2012) Evolution , vol.66 , pp. 349-362
    • Brucker, R.M.1    Bordenstein, S.R.2
  • 32
    • 84881225406 scopus 로고    scopus 로고
    • The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia
    • Brucker, R. M., and Bordenstein, S. R. (2013). The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Science 341, 667-669. doi: 10.1126/science.1240659
    • (2013) Science , vol.341 , pp. 667-669
    • Brucker, R.M.1    Bordenstein, S.R.2
  • 33
    • 55549085179 scopus 로고    scopus 로고
    • Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus
    • Brucker, R. M., Harris, R. N., Schwantes, C. R., Gallaher, T. N., Flaherty, D. C., Lam, B. A., et al. (2008). Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus. J. Chem. Ecol. 34, 1422-1429. doi: 10.1007/s10886-008-9555-7
    • (2008) J. Chem. Ecol , vol.34 , pp. 1422-1429
    • Brucker, R.M.1    Harris, R.N.2    Schwantes, C.R.3    Gallaher, T.N.4    Flaherty, D.C.5    Lam, B.A.6
  • 34
    • 84925500413 scopus 로고    scopus 로고
    • Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
    • Buffie, C. G., Bucci, V., Stein, R. R., McKenney, P. T., Ling, L., Gobourne, A., et al. (2015). Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature 517, 205-208. doi: 10.1038/nature13828
    • (2015) Nature , vol.517 , pp. 205-208
    • Buffie, C.G.1    Bucci, V.2    Stein, R.R.3    McKenney, P.T.4    Ling, L.5    Gobourne, A.6
  • 35
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Huntley, J., Fierer, N., et al. (2012). Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624. doi: 10.1038/ismej.2012.8
    • (2012) ISME J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3    Berg-Lyons, D.4    Huntley, J.5    Fierer, N.6
  • 37
    • 84888813652 scopus 로고    scopus 로고
    • Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective
    • Chagnot, C., Zorgani, M. A., Astruc, T., and Desvaux, M. (2013). Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective. Front. Microbiol. 4:303. doi: 10.3389/fmicb.2013.00303
    • (2013) Front. Microbiol , vol.4 , pp. 303
    • Chagnot, C.1    Zorgani, M.A.2    Astruc, T.3    Desvaux, M.4
  • 39
    • 84926639662 scopus 로고    scopus 로고
    • Microbiota and mucosal immunity in amphibians
    • Colombo, B. M., Scalvenzi, T., Benlamara, S., and Pollet, N. (2015). Microbiota and mucosal immunity in amphibians. Front. Immunol. 6:111. doi: 10.3389/fimmu.2015.00111
    • (2015) Front. Immunol , vol.6 , pp. 111
    • Colombo, B.M.1    Scalvenzi, T.2    Benlamara, S.3    Pollet, N.4
  • 40
    • 79960945084 scopus 로고    scopus 로고
    • Structural diversity and species distribution of host-defense peptides in frog skin secretions
    • Conlon, J. M. (2011). Structural diversity and species distribution of host-defense peptides in frog skin secretions. Cell. Mol. Life Sci. 68, 2303-2315. doi: 10.1007/s00018-011-0720-8
    • (2011) Cell. Mol. Life Sci , vol.68 , pp. 2303-2315
    • Conlon, J.M.1
  • 41
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon, S. A., and Giovannoni, S. J. (2002). High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68, 3878-3885. doi: 10.1128/AEM.68.8.3878
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 42
    • 33746669364 scopus 로고    scopus 로고
    • Molecular interactions between bacterial symbionts and their hosts
    • Dale, C., and Moran, N. A. (2006). Molecular interactions between bacterial symbionts and their hosts. Cell 126, 453-465. doi: 10.1016/j.cell.2006.07.014
    • (2006) Cell , vol.126 , pp. 453-465
    • Dale, C.1    Moran, N.A.2
  • 43
    • 84903289498 scopus 로고    scopus 로고
    • Cool temperatures reduce antifungal activity of symbiotic bacteria of threatened amphibians-implications for disease management and patterns of decline
    • Daskin, J. H., Bell, S. C., Schwarzkopf, L., and Alford, R. A. (2014). Cool temperatures reduce antifungal activity of symbiotic bacteria of threatened amphibians-implications for disease management and patterns of decline. PLoS ONE 9:e100378. doi: 10.1371/journal.pone.0100378
    • (2014) PLoS ONE , vol.9
    • Daskin, J.H.1    Bell, S.C.2    Schwarzkopf, L.3    Alford, R.A.4
  • 44
    • 84866178747 scopus 로고    scopus 로고
    • Hybrid advantage in skin peptide immune defenses of water frogs (Pelophylax esculentus) at risk from emerging pathogens
    • Daum, J. M., Davis, L. R., Bigler, L., and Woodhams, D. C. (2012). Hybrid advantage in skin peptide immune defenses of water frogs (Pelophylax esculentus) at risk from emerging pathogens. Infect. Genet. Evol. 12, 1854-1864. doi: 10.1016/j.meegid.2012.07.024
    • (2012) Infect. Genet. Evol , vol.12 , pp. 1854-1864
    • Daum, J.M.1    Davis, L.R.2    Bigler, L.3    Woodhams, D.C.4
  • 46
    • 33846000626 scopus 로고    scopus 로고
    • Mass spectrometry-based metabolomics
    • Dettmer, K., Aronov, P. A., and Hammock, B. D. (2007). Mass spectrometry-based metabolomics. Mass Spectrom. Rev. 26, 51-78. doi: 10.1002/mas.20108
    • (2007) Mass Spectrom. Rev , vol.26 , pp. 51-78
    • Dettmer, K.1    Aronov, P.A.2    Hammock, B.D.3
  • 48
    • 0031284508 scopus 로고    scopus 로고
    • Species assemblages and indicator species: the need for a flexible asymmetrical approach
    • Dufrene, M., and Legendre, P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67, 345-366. doi: 10.1890/0012-9615(1997)067[0345:SAAIST]2.0.CO;2
    • (1997) Ecol. Monogr , vol.67 , pp. 345-366
    • Dufrene, M.1    Legendre, P.2
  • 49
    • 84930613671 scopus 로고    scopus 로고
    • Bacteriophage and their potential roles in the human oral cavity
    • Edlund, A., Santiago-Rodriguez, T. M., Boehm, T. K., and Pride, D. T. (2015). Bacteriophage and their potential roles in the human oral cavity. J. Oral Microbiol. 7, 1-12. doi: 10.3402/jom.v7.27423
    • (2015) J. Oral Microbiol , vol.7 , pp. 1-12
    • Edlund, A.1    Santiago-Rodriguez, T.M.2    Boehm, T.K.3    Pride, D.T.4
  • 50
    • 84928265473 scopus 로고    scopus 로고
    • More than skin deep: functional genomic basis for resistance to amphibian chytridiomycosis
    • Ellison, A. R., Tunstall, T., DiRenzo, G. V., Hughey, M. C., Rebollar, E. A., Belden, L. K., et al. (2014). More than skin deep: functional genomic basis for resistance to amphibian chytridiomycosis. Genome Biol. Evol. 7, 286-298. doi: 10.1093/gbe/evu285
    • (2014) Genome Biol. Evol , vol.7 , pp. 286-298
    • Ellison, A.R.1    Tunstall, T.2    DiRenzo, G.V.3    Hughey, M.C.4    Rebollar, E.A.5    Belden, L.K.6
  • 51
    • 84884668080 scopus 로고    scopus 로고
    • Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity
    • Farrer, R. A., Henk, D. A., Garner, T. W. J., Balloux, F., Woodhams, D. C., and Fisher, M. C. (2013). Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity. PLoS Genet. 9:e1003703. doi: 10.1371/journal.pgen.1003703
    • (2013) PLoS Genet , vol.9
    • Farrer, R.A.1    Henk, D.A.2    Garner, T.W.J.3    Balloux, F.4    Woodhams, D.C.5    Fisher, M.C.6
  • 52
    • 81755187011 scopus 로고    scopus 로고
    • Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage
    • Farrer, R. A., Weinert, L., Bielby, J., Garner, T. W. J., Balloux, F., Clare, F., et al. (2011). Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage. Proc. Natl. Acad. Sci. U.S.A. 108, 18732-18736. doi: 10.1073/pnas.1111915108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. 18732-18736
    • Farrer, R.A.1    Weinert, L.2    Bielby, J.3    Garner, T.W.J.4    Balloux, F.5    Clare, F.6
  • 53
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: from networks to models
    • Faust, K., and Raes, J. (2012). Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10, 538-550. doi: 10.1038/nrmicro2832
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 55
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics-the link between genotypes and phenotypes
    • Fiehn, O. (2002). Metabolomics-the link between genotypes and phenotypes. Plant Mol. Biol. 48, 155-171. doi: 10.1023/A:1013713905833
    • (2002) Plant Mol. Biol , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 56
    • 84874458142 scopus 로고    scopus 로고
    • From animalcules to an ecosystem: application of ecological concepts to the Human Microbiome
    • Fierer, N., Ferrenberg, S., Flores, G. E., González, A., Kueneman, J., Legg, T., et al. (2012). From animalcules to an ecosystem: application of ecological concepts to the Human Microbiome. Annu. Rev. Ecol. Evol. Syst. 43, 137-155. doi: 10.1146/annurev-ecolsys-110411-160307
    • (2012) Annu. Rev. Ecol. Evol. Syst , vol.43 , pp. 137-155
    • Fierer, N.1    Ferrenberg, S.2    Flores, G.E.3    González, A.4    Kueneman, J.5    Legg, T.6
  • 57
    • 70349534372 scopus 로고    scopus 로고
    • Global emergence of Batrachochytrium dendrobatidis and amphibian chytridiomycosis in space, time, and host
    • Fisher, M. C., Garner, T. W. J., and Walker, S. F. (2009). Global emergence of Batrachochytrium dendrobatidis and amphibian chytridiomycosis in space, time, and host. Annu. Rev. Microbiol. 63, 291-310. doi: 10.1146/annurev.micro.091208.073435
    • (2009) Annu. Rev. Microbiol , vol.63 , pp. 291-310
    • Fisher, M.C.1    Garner, T.W.J.2    Walker, S.F.3
  • 58
    • 84859573451 scopus 로고    scopus 로고
    • Emerging fungal threats to animal, plant and ecosystem health
    • Fisher, M. C., Henk, D. A., Briggs, C. J., Brownstein, J. S., Madoff, L. C., McCraw, S. L., et al. (2012). Emerging fungal threats to animal, plant and ecosystem health. Nature 484, 186-194. doi: 10.1038/nature10947
    • (2012) Nature , vol.484 , pp. 186-194
    • Fisher, M.C.1    Henk, D.A.2    Briggs, C.J.3    Brownstein, J.S.4    Madoff, L.C.5    McCraw, S.L.6
  • 59
    • 84964253062 scopus 로고    scopus 로고
    • Systematic discovery of probiotics
    • Forster, S. C., and Lawley, T. D. (2015). Systematic discovery of probiotics. Nat. Biotechnol. 33, 47-49. doi: 10.1038/nbt.3111
    • (2015) Nat. Biotechnol , vol.33 , pp. 47-49
    • Forster, S.C.1    Lawley, T.D.2
  • 60
    • 84884654455 scopus 로고    scopus 로고
    • Distinct antimicrobial peptide expression determines host species-specific bacterial associations
    • Franzenburg, S., Walter, J., Künzel, S., Wang, J., Baines, J. F., Bosch, T. C. G., et al. (2013). Distinct antimicrobial peptide expression determines host species-specific bacterial associations. Proc. Natl. Acad. Sci. U.S.A. 110, E3730-E3738. doi: 10.1073/pnas.1304960110
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. E3730-E3738
    • Franzenburg, S.1    Walter, J.2    Künzel, S.3    Wang, J.4    Baines, J.F.5    Bosch, T.C.G.6
  • 61
    • 84929512453 scopus 로고    scopus 로고
    • Sequencing and beyond: integrating molecular "omics" for microbial community profiling
    • Franzosa, E. A., Hsu, T., Sirota-Madi, A., Shafquat, A., Abu-Ali, G., Morgan, X. C., et al. (2015). Sequencing and beyond: integrating molecular "omics" for microbial community profiling. Nat. Rev. Microbiol. 13, 360-372. doi: 10.1038/nrmicro3451
    • (2015) Nat. Rev. Microbiol , vol.13 , pp. 360-372
    • Franzosa, E.A.1    Hsu, T.2    Sirota-Madi, A.3    Shafquat, A.4    Abu-Ali, G.5    Morgan, X.C.6
  • 62
    • 84932198809 scopus 로고    scopus 로고
    • Bacteria-bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance
    • Fraune, S., Anton-Erxleben, F., Augustin, R., Franzenburg, S., Knop, M., Schröder, K., et al. (2014). Bacteria-bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance. ISME J. 9, 1543-1556. doi: 10.1038/ismej.2014.239
    • (2014) ISME J , vol.9 , pp. 1543-1556
    • Fraune, S.1    Anton-Erxleben, F.2    Augustin, R.3    Franzenburg, S.4    Knop, M.5    Schröder, K.6
  • 63
    • 67649470562 scopus 로고    scopus 로고
    • Metabolic-network-driven analysis of bacterial ecological strategies
    • Freilich, S., Kreimer, A., Borenstein, E., Yosef, N., Sharan, R., Gophna, U., et al. (2009). Metabolic-network-driven analysis of bacterial ecological strategies. Genome Biol. 10:R61. doi: 10.1186/gb-2009-10-6-r61
    • (2009) Genome Biol , vol.10 , pp. R61
    • Freilich, S.1    Kreimer, A.2    Borenstein, E.3    Yosef, N.4    Sharan, R.5    Gophna, U.6
  • 64
    • 84865733148 scopus 로고    scopus 로고
    • Inferring correlation networks from genomic survey data
    • Friedman, J., and Alm, E. J. (2012). Inferring correlation networks from genomic survey data. PLoS Comput. Biol. 8:e1002687. doi: 10.1371/journal.pcbi.1002687
    • (2012) PLoS Comput. Biol , vol.8
    • Friedman, J.1    Alm, E.J.2
  • 65
    • 84858990515 scopus 로고    scopus 로고
    • Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
    • Giannoukos, G., Ciulla, D. M., Huang, K., Haas, B. J., Izard, J., Levin, J. Z., et al. (2012). Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes. Genome Biol. 13:R23. doi: 10.1186/gb-2012-13-3-r23
    • (2012) Genome Biol , vol.13 , pp. R23
    • Giannoukos, G.1    Ciulla, D.M.2    Huang, K.3    Haas, B.J.4    Izard, J.5    Levin, J.Z.6
  • 66
    • 79955557228 scopus 로고    scopus 로고
    • Probiotics, prebiotics, and synbiotics: impact on the gut immune system and allergic reactions
    • Gourbeyre, P., Denery, S., and Bodinier, M. (2011). Probiotics, prebiotics, and synbiotics: impact on the gut immune system and allergic reactions. J. Leukoc. Biol. 89, 685-695. doi: 10.1189/jlb.1109753
    • (2011) J. Leukoc. Biol , vol.89 , pp. 685-695
    • Gourbeyre, P.1    Denery, S.2    Bodinier, M.3
  • 67
    • 84856011484 scopus 로고    scopus 로고
    • Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
    • Greenblum, S., Turnbaugh, P. J., and Borenstein, E. (2012). Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc. Natl. Acad. Sci. U.S.A. 109, 594-599. doi: 10.1073/pnas.1116053109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 594-599
    • Greenblum, S.1    Turnbaugh, P.J.2    Borenstein, E.3
  • 68
    • 79952750288 scopus 로고    scopus 로고
    • The skin microbiome
    • Grice, E. A., and Segre, J. A. (2011). The skin microbiome. Nat. Rev. Microbiol. 9, 244-253. doi: 10.1038/nrmicro2537
    • (2011) Nat. Rev. Microbiol , vol.9 , pp. 244-253
    • Grice, E.A.1    Segre, J.A.2
  • 69
    • 56249085962 scopus 로고    scopus 로고
    • Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility
    • Grzymski, J. J., Murray, A. E., Campbell, B. J., Kaplarevic, M., Gao, G. R., Lee, C., et al. (2008). Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility. Proc. Natl. Acad. Sci. U.S.A. 105, 17516-17521. doi: 10.1073/pnas.0802782105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 17516-17521
    • Grzymski, J.J.1    Murray, A.E.2    Campbell, B.J.3    Kaplarevic, M.4    Gao, G.R.5    Lee, C.6
  • 70
    • 84989214545 scopus 로고    scopus 로고
    • Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress
    • Gust, K. A., Najar, F. Z., Habib, T., Lotufo, G. R., Piggot, A. M., Fouke, B. W., et al. (2014). Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress. BMC Genomics 15:591. doi: 10.1186/1471-2164-15-591
    • (2014) BMC Genomics , vol.15 , pp. 591
    • Gust, K.A.1    Najar, F.Z.2    Habib, T.3    Lotufo, G.R.4    Piggot, A.M.5    Fouke, B.W.6
  • 71
    • 67949120453 scopus 로고    scopus 로고
    • Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus
    • Harris, R. N., Brucker, R. M., Walke, J. B., Becker, M. H., Schwantes, C. R., Flaherty, D. C., et al. (2009). Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus. ISME J. 3, 818-824. doi: 10.1038/ismej.2009.27
    • (2009) ISME J , vol.3 , pp. 818-824
    • Harris, R.N.1    Brucker, R.M.2    Walke, J.B.3    Becker, M.H.4    Schwantes, C.R.5    Flaherty, D.C.6
  • 72
    • 33644838444 scopus 로고    scopus 로고
    • Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species
    • Harris, R. N., James, T. Y., Lauer, A., Simon, M. A., and Patel, A. (2006). Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species. Ecohealth 3, 53-56. doi: 10.1007/s10393-005-0009-1
    • (2006) Ecohealth , vol.3 , pp. 53-56
    • Harris, R.N.1    James, T.Y.2    Lauer, A.3    Simon, M.A.4    Patel, A.5
  • 73
    • 84931567231 scopus 로고    scopus 로고
    • Resilience vs. historical contingency in microbial responses to environmental change
    • Hawkes, C. V., and Keitt, T. H. (2015). Resilience vs. historical contingency in microbial responses to environmental change. Ecol. Lett. 18, 612-625. doi: 10.1111/ele.12451
    • (2015) Ecol. Lett , vol.18 , pp. 612-625
    • Hawkes, C.V.1    Keitt, T.H.2
  • 74
    • 84928785725 scopus 로고    scopus 로고
    • Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis
    • Holden, W. M., Hanlon, S. M., Woodhams, D. C., Chappell, T. M., Wells, H. L., Glisson, S. M., et al. (2015). Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis. Biol. Conserv. 187, 91-102. doi: 10.1016/j.biocon.2015.04.007
    • (2015) Biol. Conserv , vol.187 , pp. 91-102
    • Holden, W.M.1    Hanlon, S.M.2    Woodhams, D.C.3    Chappell, T.M.4    Wells, H.L.5    Glisson, S.M.6
  • 75
    • 84928911460 scopus 로고    scopus 로고
    • Bacteria isolated from bats inhibit the growth of Pseudogymnoascus destructans, the causative agent of white-nose syndrome
    • Hoyt, J. R., Cheng, T. L., Langwig, K. E., Hee, M. M., Frick, W. F., and Kilpatrick, A. M. (2015). Bacteria isolated from bats inhibit the growth of Pseudogymnoascus destructans, the causative agent of white-nose syndrome. PLoS ONE 10:e0121329. doi: 10.1371/journal.pone.0121329
    • (2015) PLoS ONE , vol.10
    • Hoyt, J.R.1    Cheng, T.L.2    Langwig, K.E.3    Hee, M.M.4    Frick, W.F.5    Kilpatrick, A.M.6
  • 76
    • 0002923619 scopus 로고
    • Physiological consequences of habitat selection
    • Huey, R. B. (1991). Physiological consequences of habitat selection. Am. Naturalist 137, S91-S115. doi: 10.1086/285141
    • (1991) Am. Naturalist , vol.137 , pp. S91-S115
    • Huey, R.B.1
  • 77
    • 84938309194 scopus 로고    scopus 로고
    • Personalized microbial network inference via co-regularized spectral clustering
    • Imangaliyev, S., Keijser, B., Crielaard, W., and Tsivtsivadze, E. (2015). Personalized microbial network inference via co-regularized spectral clustering. Methods 83, 28-35. doi: 10.1016/j.ymeth.2015.03.017
    • (2015) Methods , vol.83 , pp. 28-35
    • Imangaliyev, S.1    Keijser, B.2    Crielaard, W.3    Tsivtsivadze, E.4
  • 78
    • 84912572054 scopus 로고    scopus 로고
    • The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection
    • Jani, A. J., and Briggs, C. J. (2014). The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection. Proc. Natl. Acad. Sci. U.S.A. 111, E5049-E5058. doi: 10.1073/pnas.1412752111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. E5049-E5058
    • Jani, A.J.1    Briggs, C.J.2
  • 79
    • 84899761579 scopus 로고    scopus 로고
    • Metatranscriptomics of the human oral microbiome during health and disease
    • Jorth, P., Turner, K. H., Gumus, P., Nizam, N., Buduneli, N., and Whiteley, M. (2014). Metatranscriptomics of the human oral microbiome during health and disease. MBio 5:e01012-14. doi: 10.1128/mBio.01012-14
    • (2014) MBio , vol.5
    • Jorth, P.1    Turner, K.H.2    Gumus, P.3    Nizam, N.4    Buduneli, N.5    Whiteley, M.6
  • 80
    • 84908233427 scopus 로고    scopus 로고
    • Regulation of the Rana sylvatica brevinin-1SY antimicrobial peptide during development and in dorsal and ventral skin in response to freezing, anoxia and dehydration
    • Katzenback, B. A., Holden, H. A., Falardeau, J., Childers, C., Hadj-Moussa, H., Avis, T. J., et al. (2014). Regulation of the Rana sylvatica brevinin-1SY antimicrobial peptide during development and in dorsal and ventral skin in response to freezing, anoxia and dehydration. J. Exp. Biol. 217, 1392-1401. doi: 10.1242/jeb.092288
    • (2014) J. Exp. Biol , vol.217 , pp. 1392-1401
    • Katzenback, B.A.1    Holden, H.A.2    Falardeau, J.3    Childers, C.4    Hadj-Moussa, H.5    Avis, T.J.6
  • 81
    • 84930678786 scopus 로고    scopus 로고
    • Counteraction of antibiotic production and degradation stabilizes microbial communities
    • Kelsic, E. D., Zhao, J., Vetsigian, K., and Kishony, R. (2015). Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature 521, 516-519. doi: 10.1038/nature14485
    • (2015) Nature , vol.521 , pp. 516-519
    • Kelsic, E.D.1    Zhao, J.2    Vetsigian, K.3    Kishony, R.4
  • 82
    • 37449026945 scopus 로고    scopus 로고
    • Probiotics in aquaculture: the need, principles and mechanisms of action and screening processes
    • Kesarcodi-Watson, A., Kaspar, H., Lategan, M. J., and Gibson, L. (2008). Probiotics in aquaculture: the need, principles and mechanisms of action and screening processes. Aquaculture 274, 1-14. doi: 10.1016/j.aquaculture.2007.11.019
    • (2008) Aquaculture , vol.274 , pp. 1-14
    • Kesarcodi-Watson, A.1    Kaspar, H.2    Lategan, M.J.3    Gibson, L.4
  • 83
    • 0034088763 scopus 로고    scopus 로고
    • Bacterial adhesins: function and structure
    • Klemm, P., and Schembri, M. A. (2000). Bacterial adhesins: function and structure. Int. J. Med. Microbiol. 290, 27-35. doi: 10.1016/S1438-4221(00)80102-2
    • (2000) Int. J. Med. Microbiol , vol.290 , pp. 27-35
    • Klemm, P.1    Schembri, M.A.2
  • 85
    • 84862590329 scopus 로고    scopus 로고
    • Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
    • Knief, C., Delmotte, N., Chaffron, S., Stark, M., Innerebner, G., Wassmann, R., et al. (2012). Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J. 6, 1378-1390. doi: 10.1038/ismej.2011.192
    • (2012) ISME J , vol.6 , pp. 1378-1390
    • Knief, C.1    Delmotte, N.2    Chaffron, S.3    Stark, M.4    Innerebner, G.5    Wassmann, R.6
  • 86
    • 79251625980 scopus 로고    scopus 로고
    • Supervised classification of human microbiota
    • Knights, D., Costello, E. K., and Knight, R. (2011a). Supervised classification of human microbiota. FEMS Microbiol. Rev. 35, 343-359. doi: 10.1111/j.1574-6976.2010.00251.x
    • (2011) FEMS Microbiol. Rev , vol.35 , pp. 343-359
    • Knights, D.1    Costello, E.K.2    Knight, R.3
  • 87
    • 79953026458 scopus 로고    scopus 로고
    • Supervised classification of microbiota mitigates mislabeling errors
    • Knights, D., Kuczynski, J., Koren, O., Ley, R. E., Field, D., Knight, R., et al. (2011b). Supervised classification of microbiota mitigates mislabeling errors. ISME J. 5, 570-573. doi: 10.1038/ismej.2010.148
    • (2011) ISME J , vol.5 , pp. 570-573
    • Knights, D.1    Kuczynski, J.2    Koren, O.3    Ley, R.E.4    Field, D.5    Knight, R.6
  • 88
    • 80054931117 scopus 로고    scopus 로고
    • Human-associated microbial signatures: examining their predictive value
    • Knights, D., Parfrey, L. W., Zaneveld, J., Lozupone, C., and Knight, R. (2011c). Human-associated microbial signatures: examining their predictive value. Cell Host Microbe 10, 292-296. doi: 10.1016/j.chom.2011.09.003
    • (2011) Cell Host Microbe , vol.10 , pp. 292-296
    • Knights, D.1    Parfrey, L.W.2    Zaneveld, J.3    Lozupone, C.4    Knight, R.5
  • 89
    • 0001869771 scopus 로고
    • Sulla determinazione empirica di una legge di distribuzione
    • Kolmogorov, A. (1933). Sulla determinazione empirica di una legge di distribuzione. G. Ital. Delgli Attuar 4, 83-91.
    • (1933) G. Ital. Delgli Attuar , vol.4 , pp. 83-91
    • Kolmogorov, A.1
  • 90
    • 84896322290 scopus 로고    scopus 로고
    • The amphibian skin-associated microbiome across species, space and life history stages
    • Kueneman, J. G., Parfrey, L. W., Woodhams, D. C., Archer, H. M., Knight, R., and McKenzie, V. J. (2014). The amphibian skin-associated microbiome across species, space and life history stages. Mol. Ecol. 23, 1238-1250. doi: 10.1111/mec.12510
    • (2014) Mol. Ecol , vol.23 , pp. 1238-1250
    • Kueneman, J.G.1    Parfrey, L.W.2    Woodhams, D.C.3    Archer, H.M.4    Knight, R.5    McKenzie, V.J.6
  • 91
    • 84946761586 scopus 로고    scopus 로고
    • Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas)
    • [Epub ahead of print]
    • Kueneman, J. G., Woodhams, D. C., Van Treuren, W., Archer, H. M., Knight, R., and McKenzie, V. J. (2015). Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas). ISME J. doi: 10.1038/ismej.2015.168 [Epub ahead of print].
    • (2015) ISME J
    • Kueneman, J.G.1    Woodhams, D.C.2    Van Treuren, W.3    Archer, H.M.4    Knight, R.5    McKenzie, V.J.6
  • 92
    • 84899745731 scopus 로고    scopus 로고
    • Stability of microbiota facilitated by host immune regulation: informing probiotic strategies to manage amphibian disease
    • Küng, D., Bigler, L., Davis, L. R., Gratwicke, B., Griffith, E., and Woodhams, D. C. (2014). Stability of microbiota facilitated by host immune regulation: informing probiotic strategies to manage amphibian disease. PLoS ONE 9:e87101. doi: 10.1371/journal.pone.0087101
    • (2014) PLoS ONE , vol.9
    • Küng, D.1    Bigler, L.2    Davis, L.R.3    Gratwicke, B.4    Griffith, E.5    Woodhams, D.C.6
  • 93
    • 84907766394 scopus 로고    scopus 로고
    • Functional soil microbiome: belowground solutions to an aboveground problem
    • Lakshmanan, V., Selvaraj, G., and Bais, H. P. (2014). Functional soil microbiome: belowground solutions to an aboveground problem. Plant Physiol. 166, 689-700. doi: 10.1104/pp.114.245811
    • (2014) Plant Physiol , vol.166 , pp. 689-700
    • Lakshmanan, V.1    Selvaraj, G.2    Bais, H.P.3
  • 94
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., et al. (2013). Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814-821. doi: 10.1038/nbt.2676
    • (2013) Nat. Biotechnol , vol.31 , pp. 814-821
    • Langille, M.G.I.1    Zaneveld, J.2    Caporaso, J.G.3    McDonald, D.4    Knights, D.5    Reyes, J.A.6
  • 96
    • 34548862039 scopus 로고    scopus 로고
    • Common cutaneous bacteria from the eastern red-backed salamander can inhibit pathogenic fungi
    • Lauer, A., Simon, M., Banning, J. L., Andre, E., Duncan, K., and Harris, R. N. (2007). Common cutaneous bacteria from the eastern red-backed salamander can inhibit pathogenic fungi. Copeia 2007, 630-640. doi: 10.1643/0045-8511(2007)2007[630:CCBFTE]2.0.CO;2
    • (2007) Copeia , vol.2007 , pp. 630-640
    • Lauer, A.1    Simon, M.2    Banning, J.L.3    Andre, E.4    Duncan, K.5    Harris, R.N.6
  • 97
    • 84868158515 scopus 로고    scopus 로고
    • Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
    • Lawley, T. D., Clare, S., Walker, A. W., Stares, M. D., Connor, T. R., Raisen, C., et al. (2012). Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog 8:e1002995. doi: 10.1371/journal.ppat.1002995
    • (2012) PLoS Pathog , vol.8
    • Lawley, T.D.1    Clare, S.2    Walker, A.W.3    Stares, M.D.4    Connor, T.R.5    Raisen, C.6
  • 98
    • 84866785278 scopus 로고    scopus 로고
    • Reverse ecology: from systems to environments and back
    • Levy, R., and Borenstein, E. (2012). Reverse ecology: from systems to environments and back. Evol. Syst. Biol. 751, 329-353. doi: 10.1007/978-1-4614-3567-9
    • (2012) Evol. Syst. Biol , vol.751 , pp. 329-353
    • Levy, R.1    Borenstein, E.2
  • 99
    • 84881110826 scopus 로고    scopus 로고
    • Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
    • Levy, R., and Borenstein, E. (2013). Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules. Proc. Natl. Acad. Sci. U.S.A. 110, 12804-12809. doi: 10.1073/pnas.1300926110
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 12804-12809
    • Levy, R.1    Borenstein, E.2
  • 100
    • 84899459352 scopus 로고    scopus 로고
    • Metagenomic systems biology and metabolic modeling of the human microbiome. From species composition to community assembly rules
    • Levy, R., and Borenstein, E. (2014). Metagenomic systems biology and metabolic modeling of the human microbiome. From species composition to community assembly rules. Gut Microbes 5, 1-6. doi: 10.4161/gmic.28261
    • (2014) Gut Microbes , vol.5 , pp. 1-6
    • Levy, R.1    Borenstein, E.2
  • 101
    • 84921488129 scopus 로고    scopus 로고
    • Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ
    • Liao, H.-L., Chen, Y., Bruns, T. D., Peay, K. G., Taylor, J. W., Branco, S., et al. (2014). Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ. Environ. Microbiol. 16, 3730-3742. doi: 10.1111/1462-2920.12619
    • (2014) Environ. Microbiol , vol.16 , pp. 3730-3742
    • Liao, H.-L.1    Chen, Y.2    Bruns, T.D.3    Peay, K.G.4    Taylor, J.W.5    Branco, S.6
  • 103
    • 84947487970 scopus 로고    scopus 로고
    • Twenty years of bacterial genome sequencing
    • Loman, N. J., and Pallen, M. J. (2015). Twenty years of bacterial genome sequencing. Nat. Rev. Microbiol. 13, 787-794. doi: 10.1038/nrmicro3565
    • (2015) Nat. Rev. Microbiol , vol.13 , pp. 787-794
    • Loman, N.J.1    Pallen, M.J.2
  • 104
    • 84899416776 scopus 로고    scopus 로고
    • Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)
    • Loudon, A. H., Woodhams, D. C., Parfrey, L. W., Archer, H., Knight, R., McKenzie, V., et al. (2014a). Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus). ISME J. 8, 830-840. doi: 10.1038/ismej.2013.200
    • (2014) ISME J , vol.8 , pp. 830-840
    • Loudon, A.H.1    Woodhams, D.C.2    Parfrey, L.W.3    Archer, H.4    Knight, R.5    McKenzie, V.6
  • 105
    • 84987781483 scopus 로고    scopus 로고
    • Interactions between amphibians' symbiotic bacteria cause the production of emergent anti-fungal metabolites
    • Loudon, A., Holland, J., Umile, T., Burzynski, E., Minbiole, K. P. C., and Harris, R. N. (2014b). Interactions between amphibians' symbiotic bacteria cause the production of emergent anti-fungal metabolites. Front. Microbiol. 5:441. doi: 10.3389/fmicb.2014.00441
    • (2014) Front. Microbiol , vol.5 , pp. 441
    • Loudon, A.1    Holland, J.2    Umile, T.3    Burzynski, E.4    Minbiole, K.P.C.5    Harris, R.N.6
  • 106
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
    • Love, M. I., Huber, W., and Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2. Gen. Biol. 15, 1-21. doi: 10.1101/002832
    • (2014) Gen. Biol , vol.15 , pp. 1-21
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 109
    • 84910121467 scopus 로고    scopus 로고
    • Mapping the inner workings of the microbiome: genomic-and metagenomic-based study of metabolism and of metabolic interactions in the human gut microbiome
    • Manor, O., Levy, R., and Borenstein, E. (2014). Mapping the inner workings of the microbiome: genomic-and metagenomic-based study of metabolism and of metabolic interactions in the human gut microbiome. Cell Metab. 20, 742-752. doi: 10.1016/j.cmet.2014.07.021
    • (2014) Cell Metab , vol.20 , pp. 742-752
    • Manor, O.1    Levy, R.2    Borenstein, E.3
  • 110
    • 84908592625 scopus 로고    scopus 로고
    • Recent introduction of a chytrid fungus endangers Western Palearctic salamanders
    • Martel, A., Blooi, M., Fisher, M. C., Farrer, R. A., Schmidt, B. R., Tobler, U., et al. (2014). Recent introduction of a chytrid fungus endangers Western Palearctic salamanders. Science 346, 630-631. doi: 10.1126/science.1258268
    • (2014) Science , vol.346 , pp. 630-631
    • Martel, A.1    Blooi, M.2    Fisher, M.C.3    Farrer, R.A.4    Schmidt, B.R.5    Tobler, U.6
  • 112
    • 84875247710 scopus 로고    scopus 로고
    • Transcriptomics in the RNA-seq era
    • McGettigan, P. A. (2013). Transcriptomics in the RNA-seq era. Curr. Opin. Chem. Biol. 17, 4-11. doi: 10.1016/j.cbpa.2012.12.008
    • (2013) Curr. Opin. Chem. Biol , vol.17 , pp. 4-11
    • McGettigan, P.A.1
  • 113
    • 84893686882 scopus 로고    scopus 로고
    • Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
    • McHardy, I. H., Goudarzi, M., Tong, M., Ruegger, P. M., Schwager, E., Weger, J. R., et al. (2013). Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome 1:17. doi: 10.1186/2049-2618-1-17
    • (2013) Microbiome , vol.1 , pp. 17
    • McHardy, I.H.1    Goudarzi, M.2    Tong, M.3    Ruegger, P.M.4    Schwager, E.5    Weger, J.R.6
  • 114
    • 84857117741 scopus 로고    scopus 로고
    • Co-habiting amphibian species harbor unique skin bacterial communities in wild populations
    • McKenzie, V. J., Bowers, R. M., Fierer, N., Knight, R., and Lauber, C. L. (2012). Co-habiting amphibian species harbor unique skin bacterial communities in wild populations. ISME J. 6, 588-596. doi: 10.1038/ismej.2011.129
    • (2012) ISME J , vol.6 , pp. 588-596
    • McKenzie, V.J.1    Bowers, R.M.2    Fierer, N.3    Knight, R.4    Lauber, C.L.5
  • 115
    • 84904194204 scopus 로고    scopus 로고
    • Amphibians acquire resistance to live and dead fungus overcoming fungal immunosuppression
    • McMahon, T. A., Sears, B. F., Venesky, M. D., Bessler, S. M., Brown, J. M., Deutsch, K., et al. (2014). Amphibians acquire resistance to live and dead fungus overcoming fungal immunosuppression. Nature 511, 224-227. doi: 10.1038/nature13491
    • (2014) Nature , vol.511 , pp. 224-227
    • McMahon, T.A.1    Sears, B.F.2    Venesky, M.D.3    Bessler, S.M.4    Brown, J.M.5    Deutsch, K.6
  • 116
    • 84901363655 scopus 로고    scopus 로고
    • Waste not, want not: why rarefying microbiome data is inadmissible
    • McMurdie, P. J., and Holmes, S. (2014). Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput. Biol. 10:e1003531. doi: 10.1371/journal.pcbi.1003531
    • (2014) PLoS Comput. Biol , vol.10
    • McMurdie, P.J.1    Holmes, S.2
  • 117
    • 84902257693 scopus 로고    scopus 로고
    • A multivariate approach to the integration of multi-omics datasets
    • Meng, C., Kuster, B., Culhane, A. C., and Moghaddas Gholami, A. (2014). A multivariate approach to the integration of multi-omics datasets. BMC Bioinformatics 15:162. doi: 10.1186/1471-2105-15-162
    • (2014) BMC Bioinformatics , vol.15 , pp. 162
    • Meng, C.1    Kuster, B.2    Culhane, A.C.3    Moghaddas Gholami, A.4
  • 118
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation
    • Metzker, M. L. (2010). Sequencing technologies-the next generation. Nat. Rev. Genet. 11, 31-46. doi: 10.1038/nrg2626
    • (2010) Nat. Rev. Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 119
    • 84869774828 scopus 로고    scopus 로고
    • Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians
    • Meyer, E. A., Cramp, R. L., Bernal, M. H., and Franklin, C. E. (2012). Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians. Dis. Aquat. Organ. 101, 235-242. doi: 10.3354/dao02523
    • (2012) Dis. Aquat. Organ , vol.101 , pp. 235-242
    • Meyer, E.A.1    Cramp, R.L.2    Bernal, M.H.3    Franklin, C.E.4
  • 120
    • 84899704156 scopus 로고    scopus 로고
    • Impact of plant cover on fitness and behavioural traits of captive red-eyed tree frogs (Agalychnis callidryas)
    • Michaels, C. J., Antwis, R. E., and Preziosi, R. F. (2014). Impact of plant cover on fitness and behavioural traits of captive red-eyed tree frogs (Agalychnis callidryas). PLoS ONE 9:e95207. doi: 10.1371/journal.pone.0095207
    • (2014) PLoS ONE , vol.9
    • Michaels, C.J.1    Antwis, R.E.2    Preziosi, R.F.3
  • 121
    • 84862645572 scopus 로고    scopus 로고
    • Soil bioaugmentation with amphibian cutaneous bacteria protects amphibian hosts from infection by Batrachochytrium dendrobatidis
    • Muletz, C. R., Myers, J. M., Domangue, R. J., Herrick, J. B., and Harris, R. N. (2012). Soil bioaugmentation with amphibian cutaneous bacteria protects amphibian hosts from infection by Batrachochytrium dendrobatidis. Biol. Conserv. 152, 119-126. doi: 10.1016/j.biocon.2012.03.022
    • (2012) Biol. Conserv , vol.152 , pp. 119-126
    • Muletz, C.R.1    Myers, J.M.2    Domangue, R.J.3    Herrick, J.B.4    Harris, R.N.5
  • 122
    • 84870956150 scopus 로고    scopus 로고
    • Synergistic inhibition of the lethal fungal pathogen Batrachochytrium dendrobatidis: the combined effect of symbiotic bacterial metabolites and antimicrobial peptides of the frog Rana muscosa
    • Myers, J. M., Ramsey, J. P., Blackman, A. L., Nichols, A. E., Minbiole, K. P. C., and Harris, R. N. (2012). Synergistic inhibition of the lethal fungal pathogen Batrachochytrium dendrobatidis: the combined effect of symbiotic bacterial metabolites and antimicrobial peptides of the frog Rana muscosa. J. Chem. Ecol. 38, 958-965. doi: 10.1007/s10886-012-0170-2
    • (2012) J. Chem. Ecol , vol.38 , pp. 958-965
    • Myers, J.M.1    Ramsey, J.P.2    Blackman, A.L.3    Nichols, A.E.4    Minbiole, K.P.C.5    Harris, R.N.6
  • 124
    • 84929377304 scopus 로고    scopus 로고
    • Skin sloughing rate increases with chytrid fungus infection load in a susceptible amphibian
    • Ohmer, M. E. B., Cramp, R. L., White, C. R., and Franklin, C. E. (2014). Skin sloughing rate increases with chytrid fungus infection load in a susceptible amphibian. Funct. Ecol. 29, 674-682. doi: 10.1111/1365-2435.12370
    • (2014) Funct. Ecol , vol.29 , pp. 674-682
    • Ohmer, M.E.B.1    Cramp, R.L.2    White, C.R.3    Franklin, C.E.4
  • 125
    • 79551488636 scopus 로고    scopus 로고
    • Mycolic acid-containing bacteria induce natural-product biosynthesis in Streptomyces species
    • Onaka, H., Mori, Y., Igarashi, Y., and Furumai, T. (2011). Mycolic acid-containing bacteria induce natural-product biosynthesis in Streptomyces species. Appl. Environ. Microbiol. 77, 400-406. doi: 10.1128/AEM.01337-10
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 400-406
    • Onaka, H.1    Mori, Y.2    Igarashi, Y.3    Furumai, T.4
  • 126
    • 84927560521 scopus 로고    scopus 로고
    • Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches
    • Papadimitriou, K., Zoumpopoulou, G., Foligné, B., Alexandraki, V., Kazou, M., Pot, B., et al. (2015). Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches. Front. Microbiol. 6:58. doi: 10.3389/fmicb.2015.00058
    • (2015) Front. Microbiol , vol.6 , pp. 58
    • Papadimitriou, K.1    Zoumpopoulou, G.2    Foligné, B.3    Alexandraki, V.4    Kazou, M.5    Pot, B.6
  • 127
    • 84904890500 scopus 로고    scopus 로고
    • Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
    • Parfrey, L. W., Walters, W. A., Lauber, C. L., Clemente, J. C., Berg-Lyons, D., Teiling, C., et al. (2014). Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity. Front. Microbiol. 5:298. doi: 10.3389/fmicb.2014.00298
    • (2014) Front. Microbiol , vol.5 , pp. 298
    • Parfrey, L.W.1    Walters, W.A.2    Lauber, C.L.3    Clemente, J.C.4    Berg-Lyons, D.5    Teiling, C.6
  • 128
    • 84858440260 scopus 로고    scopus 로고
    • The ebb and flow of antimicrobial skin peptides defends northern leopard frogs (Rana pipiens) against chytridiomycosis
    • Pask, J. D., Woodhams, D. C., and Rollins-Smith, L. A. (2012). The ebb and flow of antimicrobial skin peptides defends northern leopard frogs (Rana pipiens) against chytridiomycosis. Glob. Change Biol. 18, 1231-1238. doi: 10.1111/j.1365-2486.2011.02622.x
    • (2012) Glob. Change Biol , vol.18 , pp. 1231-1238
    • Pask, J.D.1    Woodhams, D.C.2    Rollins-Smith, L.A.3
  • 129
    • 84873706718 scopus 로고    scopus 로고
    • Therapeutic use of prebiotics, probiotics, and postbiotics to prevent necrotizing enterocolitis: what is the current evidence?
    • Patel, R. M., and Denning, P. W. (2013). Therapeutic use of prebiotics, probiotics, and postbiotics to prevent necrotizing enterocolitis: what is the current evidence? Clin. Perinatol. 40, 11-25. doi: 10.1016/j.clp.2012.12.002
    • (2013) Clin. Perinatol , vol.40 , pp. 11-25
    • Patel, R.M.1    Denning, P.W.2
  • 130
    • 84872574347 scopus 로고    scopus 로고
    • A view from above: cloud plots to visualize global metabolomic data
    • Patti, G. J., Tautenhahn, R., Rinehart, D., Cho, K., Shriver, L. P., Manchester, M., et al. (2013). A view from above: cloud plots to visualize global metabolomic data. Anal. Chem. 85, 798-804. doi: 10.1021/ac3029745
    • (2013) Anal. Chem , vol.85 , pp. 798-804
    • Patti, G.J.1    Tautenhahn, R.2    Rinehart, D.3    Cho, K.4    Shriver, L.P.5    Manchester, M.6
  • 131
    • 37049236408 scopus 로고
    • Determination of the coefficient of correlation
    • Pearson, K. (1909). Determination of the coefficient of correlation. Science 30, 23-25. doi: 10.1126/science.30.757.23
    • (1909) Science , vol.30 , pp. 23-25
    • Pearson, K.1
  • 132
    • 1542320961 scopus 로고    scopus 로고
    • Physiology of Batrachochytrium dendrobatidis, a chytrid pathogen of amphibians
    • Piotrowski, J. S., Annis, S. L., and Longcore, J. E. (2004). Physiology of Batrachochytrium dendrobatidis, a chytrid pathogen of amphibians. Mycologia 96, 9-15. doi: 10.2307/3761981
    • (2004) Mycologia , vol.96 , pp. 9-15
    • Piotrowski, J.S.1    Annis, S.L.2    Longcore, J.E.3
  • 133
    • 84938562379 scopus 로고    scopus 로고
    • A de novo assembly of the common frog (Rana temporaria) transcriptome and comparison of transcription following exposure to Ranavirus and Batrachochytrium dendrobatidis
    • Price, S. J., Garner, T. W. J., Balloux, F., Ruis, C., Paszkiewicz, K. H., Moore, K., et al. (2015). A de novo assembly of the common frog (Rana temporaria) transcriptome and comparison of transcription following exposure to Ranavirus and Batrachochytrium dendrobatidis. PLoS ONE 10:e0130500. doi: 10.1371/journal.pone.0130500
    • (2015) PLoS ONE , vol.10
    • Price, S.J.1    Garner, T.W.J.2    Balloux, F.3    Ruis, C.4    Paszkiewicz, K.H.5    Moore, K.6
  • 135
    • 84914179053 scopus 로고    scopus 로고
    • Vienna: R Foundation for Statistical Computing
    • R Core Team (2014). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing. Available at: http://www. R-project.org/
    • (2014) R: A Language and Environment for Statistical Computing
  • 136
    • 33748436087 scopus 로고    scopus 로고
    • Negative effects of changing temperature on amphibian immunity under field conditions
    • Raffel, T. R., Rohr, J. R., Kiesecker, J. M., and Hudson, P. J. (2006). Negative effects of changing temperature on amphibian immunity under field conditions. Funct. Ecol. 20, 819-828. doi: 10.1111/j.1365-2435.2006.01159.x
    • (2006) Funct. Ecol , vol.20 , pp. 819-828
    • Raffel, T.R.1    Rohr, J.R.2    Kiesecker, J.M.3    Hudson, P.J.4
  • 137
    • 77956623272 scopus 로고    scopus 로고
    • Immune defenses against Batrachochytrium dendrobatidis, a fungus linked to global amphibian declines, in the South African clawed frog, Xenopus laevis
    • Ramsey, J. P., Reinert, L. K., Harper, L. K., Woodhams, D. C., and Rollins-Smith, L. A. (2010). Immune defenses against Batrachochytrium dendrobatidis, a fungus linked to global amphibian declines, in the South African clawed frog, Xenopus laevis. Infect. Immun. 78, 3981-3992. doi: 10.1128/IAI.00402-10
    • (2010) Infect. Immun , vol.78 , pp. 3981-3992
    • Ramsey, J.P.1    Reinert, L.K.2    Harper, L.K.3    Woodhams, D.C.4    Rollins-Smith, L.A.5
  • 138
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé, M. S., Connon, S. A., Vergin, K. L., and Giovannoni, S. J. (2002). Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418, 630-633. doi: 10.1038/nature00917
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappé, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 139
    • 84953410561 scopus 로고    scopus 로고
    • Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis
    • [Epub ahead of print]
    • Rebollar, E. A., Hughey, M. C., Medina, D., Harris, R. N., Ibáñez, R., and Belden, L. K. (2016). Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis. ISME J. doi: 10.1038/ismej.2015.234 [Epub ahead of print].
    • (2016) ISME J
    • Rebollar, E.A.1    Hughey, M.C.2    Medina, D.3    Harris, R.N.4    Ibáñez, R.5    Belden, L.K.6
  • 140
    • 78650291202 scopus 로고    scopus 로고
    • Microbiota restoration: natural and supplemented recovery of human microbial communities
    • Reid, G., Younes, J. A., Van der Mei, H. C., Gloor, G. B., Knight, R., and Busscher, H. J. (2011). Microbiota restoration: natural and supplemented recovery of human microbial communities. Nat. Rev. Microbiol. 9, 27-38. doi: 10.1038/nrmicro2473
    • (2011) Nat. Rev. Microbiol , vol.9 , pp. 27-38
    • Reid, G.1    Younes, J.A.2    Van der Mei, H.C.3    Gloor, G.B.4    Knight, R.5    Busscher, H.J.6
  • 143
    • 85016631587 scopus 로고    scopus 로고
    • Fungal genomics & biology mycobiota: micro-eukaryotes inhabiting our body as commensals or opportunistic pathogens
    • Rizzetto, L., Filippo, C., and De Cavalieri, D. (2015). Fungal genomics & biology mycobiota: micro-eukaryotes inhabiting our body as commensals or opportunistic pathogens. Fungal Genom. Biol. 4, 1-9. doi: 10.4172/2165-8056.1000120
    • (2015) Fungal Genom. Biol , vol.4 , pp. 1-9
    • Rizzetto, L.1    Filippo, C.2    De Cavalieri, D.3
  • 145
    • 80053243192 scopus 로고    scopus 로고
    • Amphibian immune defenses against chytridiomycosis: impacts of changing environments
    • Rollins-Smith, L. A., Ramsey, J. P., Pask, J. D., Reinert, L. K., and Woodhams, D. C. (2011). Amphibian immune defenses against chytridiomycosis: impacts of changing environments. Integr. Comp. Biol. 51, 552-562. doi: 10.1093/icb/icr095
    • (2011) Integr. Comp. Biol , vol.51 , pp. 552-562
    • Rollins-Smith, L.A.1    Ramsey, J.P.2    Pask, J.D.3    Reinert, L.K.4    Woodhams, D.C.5
  • 146
    • 84867899570 scopus 로고    scopus 로고
    • 'Amphibian immunity: staying in tune with the environment, '
    • eds G. E. Demas, and R. J. Nelson (Oxford: Oxford University Press)
    • Rollins-Smith, L. A., and Woodhams, D. C. (2012). "Amphibian immunity: staying in tune with the environment, "in Eco-Immunology, eds G. E. Demas, and R. J. Nelson (Oxford: Oxford University Press), 92-143.
    • (2012) Eco-Immunology , pp. 92-143
    • Rollins-Smith, L.A.1    Woodhams, D.C.2
  • 147
    • 77749239782 scopus 로고    scopus 로고
    • Mapping change in large networks
    • Rosvall, M., and Bergstrom, C. T. (2010). Mapping change in large networks. PLoS ONE 5:e8694. doi: 10.1371/journal.pone.0008694
    • (2010) PLoS ONE , vol.5
    • Rosvall, M.1    Bergstrom, C.T.2
  • 148
    • 84875801109 scopus 로고    scopus 로고
    • Hot bodies protect amphibians against chytrid infection in nature
    • Rowley, J. J. L., and Alford, R. A. (2013). Hot bodies protect amphibians against chytrid infection in nature. Sci. Rep. 3:1515. doi: 10.1038/srep01515
    • (2013) Sci. Rep , vol.3 , pp. 1515
    • Rowley, J.J.L.1    Alford, R.A.2
  • 149
    • 33749824905 scopus 로고    scopus 로고
    • Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors
    • Ruan, Q., Dutta, D., Schwalbach, M. S., Steele, J. A., Fuhrman, J. A., and Sun, F. (2006). Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics 22, 2532-2538. doi: 10.1093/bioinformatics/btl417
    • (2006) Bioinformatics , vol.22 , pp. 2532-2538
    • Ruan, Q.1    Dutta, D.2    Schwalbach, M.S.3    Steele, J.A.4    Fuhrman, J.A.5    Sun, F.6
  • 150
    • 84886242828 scopus 로고    scopus 로고
    • Omics for the study of probiotic microorganisms
    • Sánchez, B., Ruiz, L., Gueimonde, M., and Margolles, A. (2013). Omics for the study of probiotic microorganisms. Food Res. Int. 54, 1061-1071. doi: 10.1016/j.foodres.2013.01.029
    • (2013) Food Res. Int , vol.54 , pp. 1061-1071
    • Sánchez, B.1    Ruiz, L.2    Gueimonde, M.3    Margolles, A.4
  • 151
    • 84896388229 scopus 로고    scopus 로고
    • Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
    • Sanders, J. G., Powell, S., Kronauer, D. J. C., Vasconcelos, H. L., Frederickson, M. E., and Pierce, N. E. (2014). Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Mol. Ecol. 23, 1268-1283. doi: 10.1111/mec.12611
    • (2014) Mol. Ecol , vol.23 , pp. 1268-1283
    • Sanders, J.G.1    Powell, S.2    Kronauer, D.J.C.3    Vasconcelos, H.L.4    Frederickson, M.E.5    Pierce, N.E.6
  • 152
    • 84898786818 scopus 로고    scopus 로고
    • Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes
    • Savage, A. E., Kiemnec-Tyburczy, K. M., Ellison, A. R., Fleischer, R. C., and Zamudio, K. R. (2014). Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes. Gene 542, 98-108. doi: 10.1016/j.gene.2014.03.051
    • (2014) Gene , vol.542 , pp. 98-108
    • Savage, A.E.1    Kiemnec-Tyburczy, K.M.2    Ellison, A.R.3    Fleischer, R.C.4    Zamudio, K.R.5
  • 153
    • 80053627099 scopus 로고    scopus 로고
    • MHC genotypes associate with resistance to a frog-killing fungus
    • Savage, A. E., and Zamudio, K. R. (2011). MHC genotypes associate with resistance to a frog-killing fungus. Proc. Natl. Acad. Sci. U.S.A. 108, 16705-16710. doi: 10.1073/pnas.1106893108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. 16705-16710
    • Savage, A.E.1    Zamudio, K.R.2
  • 154
    • 84867688162 scopus 로고    scopus 로고
    • Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade
    • Schloegel, L. M., Toledo, L. F., Longcore, J. E., Greenspan, S. E., Vieira, C. A., Lee, M., et al. (2012). Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade. Mol. Ecol. 21, 5162-5177. doi: 10.1111/j.1365-294X.2012.05710.x
    • (2012) Mol. Ecol , vol.21 , pp. 5162-5177
    • Schloegel, L.M.1    Toledo, L.F.2    Longcore, J.E.3    Greenspan, S.E.4    Vieira, C.A.5    Lee, M.6
  • 155
    • 77956356899 scopus 로고    scopus 로고
    • Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin
    • Schloss, P. D., Allen, H. K., Klimowicz, A. K., Mlot, C., Gross, J. A., Savengsuksa, S., et al. (2010). Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. DNA Cell Biol. 29, 533-541. doi: 10.1089/dna.2010.1020
    • (2010) DNA Cell Biol , vol.29 , pp. 533-541
    • Schloss, P.D.1    Allen, H.K.2    Klimowicz, A.K.3    Mlot, C.4    Gross, J.A.5    Savengsuksa, S.6
  • 156
    • 84900488455 scopus 로고    scopus 로고
    • Sea star wasting
    • Schrope, M. (2014). Sea star wasting. Proc. Natl. Acad. Sci. U.S.A. 111:6855. doi: 10.1073/pnas.1404650111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 6855
    • Schrope, M.1
  • 157
    • 84927523798 scopus 로고    scopus 로고
    • Computational prediction of molecular pathogen-host interactions based on dual transcriptome data
    • Schulze, S., Henkel, S. G., Driesch, D., Guthke, R., and Linde, J. (2015). Computational prediction of molecular pathogen-host interactions based on dual transcriptome data. Front. Microbiol. 6:65. doi: 10.3389/fmicb.2015.00065
    • (2015) Front. Microbiol , vol.6 , pp. 65
    • Schulze, S.1    Henkel, S.G.2    Driesch, D.3    Guthke, R.4    Linde, J.5
  • 158
    • 80052594083 scopus 로고    scopus 로고
    • Differential host susceptibility to Batrachochytrium dendrobatidis, an emerging amphibian pathogen
    • Searle, C. L., Gervasi, S. S., Hua, J., Hammond, J. I., Relyea, R. A., Olson, D. H., et al. (2011). Differential host susceptibility to Batrachochytrium dendrobatidis, an emerging amphibian pathogen. Conserv. Biol. 25, 965-974. doi: 10.1111/j.1523-1739.2011.01708.x
    • (2011) Conserv. Biol , vol.25 , pp. 965-974
    • Searle, C.L.1    Gervasi, S.S.2    Hua, J.3    Hammond, J.I.4    Relyea, R.A.5    Olson, D.H.6
  • 160
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., et al. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504. doi: 10.1101/gr.1239303
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6
  • 162
    • 0000641534 scopus 로고
    • Sur la distribution de ω2 (criterium de M. R. v. Mises)
    • Smirnov, N. (1936). Sur la distribution de ω2 (criterium de M. R. v. Mises). Compt. Rend. Acad. Sci. 202, 449-452.
    • (1936) Compt. Rend. Acad. Sci , vol.202 , pp. 449-452
    • Smirnov, N.1
  • 163
    • 0002965815 scopus 로고
    • The proof and measurement of association between two things
    • Spearman, C. (1904). The proof and measurement of association between two things. Am. J. Psychol. 15, 72-101. doi: 10.2307/1412159
    • (1904) Am. J. Psychol , vol.15 , pp. 72-101
    • Spearman, C.1
  • 164
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor, A., Koren, O., and Ley, R. (2011). Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 9, 279-290. doi: 10.1038/nrmicro2540
    • (2011) Nat. Rev. Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 165
    • 84923857557 scopus 로고    scopus 로고
    • A comprehensive evaluation of multicategory classification methods for microbiomic data
    • Statnikov, A., Henaff, M., Narendra, V., Konganti, K., Li, Z., Yang, L., et al. (2013). A comprehensive evaluation of multicategory classification methods for microbiomic data. Microbiome 1:11. doi: 10.1186/2049-2618-1-11
    • (2013) Microbiome , vol.1 , pp. 11
    • Statnikov, A.1    Henaff, M.2    Narendra, V.3    Konganti, K.4    Li, Z.5    Yang, L.6
  • 166
    • 80052061077 scopus 로고    scopus 로고
    • Marine bacterial, archaeal and protistan association networks reveal ecological linkages
    • Steele, J. A., Countway, P. D., Xia, L., Vigil, P. D., Beman, J. M., Kim, D. Y., et al. (2011). Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J. 5, 1414-1425. doi: 10.1038/ismej.2011.24
    • (2011) ISME J , vol.5 , pp. 1414-1425
    • Steele, J.A.1    Countway, P.D.2    Xia, L.3    Vigil, P.D.4    Beman, J.M.5    Kim, D.Y.6
  • 167
    • 84883399888 scopus 로고    scopus 로고
    • Variation in thermal performance of a widespread pathogen, the amphibian chytrid fungus Batrachochytrium dendrobatidis
    • Stevenson, L. A., Alford, R. A., Bell, S. C., Roznik, E. A., Berger, L., and Pike, D. A. (2013). Variation in thermal performance of a widespread pathogen, the amphibian chytrid fungus Batrachochytrium dendrobatidis. PLoS ONE 8:e7380. doi: 10.1371/journal.pone.0073830
    • (2013) PLoS ONE , vol.8
    • Stevenson, L.A.1    Alford, R.A.2    Bell, S.C.3    Roznik, E.A.4    Berger, L.5    Pike, D.A.6
  • 168
    • 79953112264 scopus 로고    scopus 로고
    • Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
    • Stewart, F. J., Sharma, A. K., Bryant, J. A., Eppley, J. M., and DeLong, E. F. (2011). Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. Genome Biol. 12:R26. doi: 10.1186/gb-2011-12-3-r26
    • (2011) Genome Biol , vol.12 , pp. R26
    • Stewart, F.J.1    Sharma, A.K.2    Bryant, J.A.3    Eppley, J.M.4    DeLong, E.F.5
  • 169
    • 77449117773 scopus 로고    scopus 로고
    • Immunization is ineffective at preventing infection and mortality due to the amphibian chytrid fungus Batrachochytrium dendrobatidis
    • Stice, M. J., and Briggs, C. J. (2010). Immunization is ineffective at preventing infection and mortality due to the amphibian chytrid fungus Batrachochytrium dendrobatidis. J. Wildl. Dis. 46, 70-77. doi: 10.7589/0090-3558-46.1.70
    • (2010) J. Wildl. Dis , vol.46 , pp. 70-77
    • Stice, M.J.1    Briggs, C.J.2
  • 170
    • 84927160317 scopus 로고    scopus 로고
    • Co-infection alters population dynamics of infectious disease
    • Susi, H., Barrès, B., Vale, P. F., and Laine, A.-L. (2015). Co-infection alters population dynamics of infectious disease. Nat. Commun. 6:5975. doi: 10.1038/ncomms6975
    • (2015) Nat. Commun , vol.6 , pp. 5975
    • Susi, H.1    Barrès, B.2    Vale, P.F.3    Laine, A.-L.4
  • 171
    • 36148990699 scopus 로고    scopus 로고
    • Selection for antimicrobial peptide diversity in frogs leads to gene duplication and low allelic variation
    • Tennessen, J. A., and Blouin, M. S. (2007). Selection for antimicrobial peptide diversity in frogs leads to gene duplication and low allelic variation. J. Mol. Evol. 65, 605-615. doi: 10.1007/s00239-007-9045-5
    • (2007) J. Mol. Evol , vol.65 , pp. 605-615
    • Tennessen, J.A.1    Blouin, M.S.2
  • 172
    • 69949085718 scopus 로고    scopus 로고
    • Variations in the expressed antimicrobial peptide repertoire of northern leopard frog (Rana pipiens) populations suggest intraspecies differences in resistance to pathogens
    • Tennessen, J. A., Woodhams, D. C., Chaurand, P., Reinert, L. K., Billheimer, D., Shyr, Y., et al. (2009). Variations in the expressed antimicrobial peptide repertoire of northern leopard frog (Rana pipiens) populations suggest intraspecies differences in resistance to pathogens. Dev. Comp. Immunol. 33, 1247-1257. doi: 10.1016/j.dci.2009.07.004
    • (2009) Dev. Comp. Immunol , vol.33 , pp. 1247-1257
    • Tennessen, J.A.1    Woodhams, D.C.2    Chaurand, P.3    Reinert, L.K.4    Billheimer, D.5    Shyr, Y.6
  • 173
    • 84899536619 scopus 로고    scopus 로고
    • Nonlethal amphibian skin swabbing of cutaneous natural products for HPLC fingerprinting
    • Umile, T. P., McLaughlin, P. J., Johnson, K. R., Honarvar, S., Blackman, A. L., Burzynski, E. A., et al. (2014). Nonlethal amphibian skin swabbing of cutaneous natural products for HPLC fingerprinting. Anal. Methods 6, 3277-3284. doi: 10.1039/c4ay00566j
    • (2014) Anal. Methods , vol.6 , pp. 3277-3284
    • Umile, T.P.1    McLaughlin, P.J.2    Johnson, K.R.3    Honarvar, S.4    Blackman, A.L.5    Burzynski, E.A.6
  • 174
    • 84901296354 scopus 로고    scopus 로고
    • The mycobiota: interactions between commensal fungi and the host immune system
    • Underhill, D. M., and Iliev, I. D. (2014). The mycobiota: interactions between commensal fungi and the host immune system. Nat. Rev. Immunol. 14, 405-416. doi: 10.1038/nri3684
    • (2014) Nat. Rev. Immunol , vol.14 , pp. 405-416
    • Underhill, D.M.1    Iliev, I.D.2
  • 175
    • 84931385782 scopus 로고    scopus 로고
    • Effect of probiotics/prebiotics on cattle health and productivity
    • Uyeno, Y., Shigemori, S., and Shimosato, T. (2015). Effect of probiotics/prebiotics on cattle health and productivity. Microbes Environ. 30, 126-132. doi: 10.1264/jsme2.ME14176
    • (2015) Microbes Environ , vol.30 , pp. 126-132
    • Uyeno, Y.1    Shigemori, S.2    Shimosato, T.3
  • 176
    • 77954353448 scopus 로고    scopus 로고
    • Strategies for culture of "unculturable" bacteria
    • Vartoukian, S. R., Palmer, R. M., and Wade, W. G. (2010). Strategies for culture of "unculturable" bacteria. FEMS Microbiol. Lett. 309, 1-7. doi: 10.1111/j.1574-6968.2010.02000.x
    • (2010) FEMS Microbiol. Lett , vol.309 , pp. 1-7
    • Vartoukian, S.R.1    Palmer, R.M.2    Wade, W.G.3
  • 177
    • 84877097748 scopus 로고    scopus 로고
    • Temperature alters reproductive life history patterns in Batrachochytrium dendrobatidis, a lethal pathogen associated with the global loss of amphibians
    • Voyles, J., Johnson, L. R., Briggs, C. J., Cashins, S. D., Alford, R. A., Berger, L., et al. (2012). Temperature alters reproductive life history patterns in Batrachochytrium dendrobatidis, a lethal pathogen associated with the global loss of amphibians. Ecol. Evol. 2, 2241-2249. doi: 10.1002/ece3.334
    • (2012) Ecol. Evol , vol.2 , pp. 2241-2249
    • Voyles, J.1    Johnson, L.R.2    Briggs, C.J.3    Cashins, S.D.4    Alford, R.A.5    Berger, L.6
  • 178
    • 50049132102 scopus 로고    scopus 로고
    • Are we in the midst of the sixth mass extinction? A view from the world of amphibians
    • Wake, D. B., and Vredenburg, V. T. (2008). Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proc. Natl. Acad. Sci. U.S.A. 105, 11466-11473. doi: 10.1073/pnas.0801921105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 11466-11473
    • Wake, D.B.1    Vredenburg, V.T.2
  • 179
    • 84940775219 scopus 로고    scopus 로고
    • Most of the dominant members of amphibian skin bacterial communities can be readily cultured
    • Walke, J. B., Becker, M. H., Hughey, M. C., Swartwout, M. C., Jensen, R. V., and Belden, L. K. (2015). Most of the dominant members of amphibian skin bacterial communities can be readily cultured. Appl. Environ. Microbiol. 81, 6589-6600. doi: 10.1128/AEM.01486-15
    • (2015) Appl. Environ. Microbiol , vol.81 , pp. 6589-6600
    • Walke, J.B.1    Becker, M.H.2    Hughey, M.C.3    Swartwout, M.C.4    Jensen, R.V.5    Belden, L.K.6
  • 180
    • 84908223133 scopus 로고    scopus 로고
    • Amphibian skin may select for rare environmental microbes
    • Walke, J. B., Becker, M. H., Loftus, S. C., House, L. L., Cormier, G., Jensen, R. V., et al. (2014). Amphibian skin may select for rare environmental microbes. ISME J. 8, 1-11. doi: 10.1038/ismej.2014.77
    • (2014) ISME J , vol.8 , pp. 1-11
    • Walke, J.B.1    Becker, M.H.2    Loftus, S.C.3    House, L.L.4    Cormier, G.5    Jensen, R.V.6
  • 181
    • 79960147009 scopus 로고    scopus 로고
    • Social immunity in amphibians: evidence for vertical transmission of innate defenses
    • Walke, J. B., Harris, R. N., Reinert, L. K., Rollins-Smith, L. A., and Woodhams, D. C. (2011). Social immunity in amphibians: evidence for vertical transmission of innate defenses. Biotropica 43, 396-400. doi: 10.1111/j.1744-7429.2011.00787.x
    • (2011) Biotropica , vol.43 , pp. 396-400
    • Walke, J.B.1    Harris, R.N.2    Reinert, L.K.3    Rollins-Smith, L.A.4    Woodhams, D.C.5
  • 183
    • 0000637989 scopus 로고    scopus 로고
    • The "K" selected oligotrhophic bacteria: a key to uncultured diversity?
    • Watve, M., Shejval, V., Sonawane, C., Rahalkar, M., Matapurkar, A., Shouche, Y., et al. (2000). The "K" selected oligotrhophic bacteria: a key to uncultured diversity? Curr. Sci. 78, 1535-1542.
    • (2000) Curr. Sci , vol.78 , pp. 1535-1542
    • Watve, M.1    Shejval, V.2    Sonawane, C.3    Rahalkar, M.4    Matapurkar, A.5    Shouche, Y.6
  • 184
    • 84945247885 scopus 로고    scopus 로고
    • Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data
    • Weiss, S. J., Xu, Z., Amir, A., Peddada, S., Bittinger, K., Gonzalez, A., et al. (2015). Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data. Peer J. 3:e1408. doi: 10.7287/peerj.preprints.1157v1
    • (2015) Peer J , vol.3
    • Weiss, S.J.1    Xu, Z.2    Amir, A.3    Peddada, S.4    Bittinger, K.5    Gonzalez, A.6
  • 185
    • 84865155546 scopus 로고    scopus 로고
    • Dual RNA-seq of pathogen and host
    • Westermann, A. J., Gorski, S. A., and Vogel, J. (2012). Dual RNA-seq of pathogen and host. Nat. Rev. Microbiol. 10, 618-630. doi: 10.1038/nrmicro2852
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 618-630
    • Westermann, A.J.1    Gorski, S.A.2    Vogel, J.3
  • 186
    • 80053412447 scopus 로고    scopus 로고
    • The gut of red-backed salamanders (Plethodon cinereus) may serve as a reservoir for an antifungal cutaneous bacterium
    • Wiggins, P. J., Smith, J. M., Harris, R. N., and Minbiole, K. P. C. (2011). The gut of red-backed salamanders (Plethodon cinereus) may serve as a reservoir for an antifungal cutaneous bacterium. J. Herpetol. 45, 329-332. doi: 10.1670/10-231.1
    • (2011) J. Herpetol , vol.45 , pp. 329-332
    • Wiggins, P.J.1    Smith, J.M.2    Harris, R.N.3    Minbiole, K.P.C.4
  • 190
    • 54549094818 scopus 로고    scopus 로고
    • Life-history trade-offs influence disease in changing climates: strategies of an amphibian pathogen
    • Woodhams, D., Alford, R. A., and Briggs, C. J. (2008). Life-history trade-offs influence disease in changing climates: strategies of an amphibian pathogen. Ecology 89, 1627-1639. doi: 10.1890/06-1842.1
    • (2008) Ecology , vol.89 , pp. 1627-1639
    • Woodhams, D.1    Alford, R.A.2    Briggs, C.J.3
  • 191
    • 84930033296 scopus 로고    scopus 로고
    • Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens
    • Woodhams, D. C., Alford, R. A., Antwis, R. E., Archer, H., Becker, M. H., Belden, L. K., et al. (2015). Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens. Ecology 96:595. doi: 10.1890/14-1837.1
    • (2015) Ecology , vol.96 , pp. 595
    • Woodhams, D.C.1    Alford, R.A.2    Antwis, R.E.3    Archer, H.4    Becker, M.H.5    Belden, L.K.6
  • 192
    • 84867690696 scopus 로고    scopus 로고
    • Tolerance of fungal infection in European water frogs exposed to Batrachochytrium dendrobatidis after experimental reduction of innate immune defenses
    • Woodhams, D. C., Bigler, L., and Marschang, R. (2012). Tolerance of fungal infection in European water frogs exposed to Batrachochytrium dendrobatidis after experimental reduction of innate immune defenses. BMC Vet. Res. 8:197. doi: 10.1186/1746-6148-8-197
    • (2012) BMC Vet. Res , vol.8 , pp. 197
    • Woodhams, D.C.1    Bigler, L.2    Marschang, R.3
  • 193
    • 84904977891 scopus 로고    scopus 로고
    • Interacting symbionts and immunity in the amphibian skin mucosome predict disease risk and probiotic effectiveness
    • Woodhams, D. C., Brandt, H., Baumgartner, S., Kielgast, J., Küpfer, E., Tobler, U., et al. (2014). Interacting symbionts and immunity in the amphibian skin mucosome predict disease risk and probiotic effectiveness. PLoS ONE 9:e96375. doi: 10.1371/journal.pone.0096375
    • (2014) PLoS ONE , vol.9
    • Woodhams, D.C.1    Brandt, H.2    Baumgartner, S.3    Kielgast, J.4    Küpfer, E.5    Tobler, U.6
  • 194
    • 34547509968 scopus 로고    scopus 로고
    • Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog, Rana muscosa
    • Woodhams, D. C., Vredenburg, V. T., Simon, M.-A., Billheimer, D., Shakhtour, B., Shyr, Y., et al. (2007). Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog, Rana muscosa. Biol. Conserv. 138, 390-398. doi: 10.1016/j.biocon.2007.05.004
    • (2007) Biol. Conserv , vol.138 , pp. 390-398
    • Woodhams, D.C.1    Vredenburg, V.T.2    Simon, M.-A.3    Billheimer, D.4    Shakhtour, B.5    Shyr, Y.6
  • 195
    • 33750431080 scopus 로고    scopus 로고
    • Symbiosis insights through metagenomic analysis of a microbial consortium
    • Woyke, T., Teeling, H., Ivanova, N. N., Huntemann, M., Richter, M., Gloeckner, F. O., et al. (2006). Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-955. doi: 10.1038/nature05192
    • (2006) Nature , vol.443 , pp. 950-955
    • Woyke, T.1    Teeling, H.2    Ivanova, N.N.3    Huntemann, M.4    Richter, M.5    Gloeckner, F.O.6
  • 196
    • 84872568885 scopus 로고    scopus 로고
    • Efficient statistical significance approximation for local similarity analysis of high-throughput time series data
    • Xia, L. C., Ai, D., Cram, J., Fuhrman, J. A., and Sun, F. (2013). Efficient statistical significance approximation for local similarity analysis of high-throughput time series data. Bioinformatics 29, 230-237. doi: 10.1093/bioinformatics/bts668
    • (2013) Bioinformatics , vol.29 , pp. 230-237
    • Xia, L.C.1    Ai, D.2    Cram, J.3    Fuhrman, J.A.4    Sun, F.5
  • 197
    • 84898638322 scopus 로고    scopus 로고
    • Bioinformatic approaches reveal metagenomic characterization of soil microbial community
    • Xu, Z., Hansen, M. A., Hansen, L. H., Jacquiod, S., and Sørensen, S. J. (2014). Bioinformatic approaches reveal metagenomic characterization of soil microbial community. PLoS ONE 9:e93445. doi: 10.1371/journal.pone.0093445
    • (2014) PLoS ONE , vol.9
    • Xu, Z.1    Hansen, M.A.2    Hansen, L.H.3    Jacquiod, S.4    Sørensen, S.J.5
  • 198
    • 84940528053 scopus 로고    scopus 로고
    • Averting a North American biodiversity crisis
    • Yap, B. T. A., Koo, M. S., Ambrose, R. F., Wake, D. B., and Vredenburg, V. T. (2015). Averting a North American biodiversity crisis. Science 349, 481-482. doi: 10.1126/science.aab1052
    • (2015) Science , vol.349 , pp. 481-482
    • Yap, B.T.A.1    Koo, M.S.2    Ambrose, R.F.3    Wake, D.B.4    Vredenburg, V.T.5
  • 199
    • 84925379648 scopus 로고    scopus 로고
    • The bacterial communities associated with fecal types and body weight of rex rabbits
    • Zeng, B., Han, S., Wang, P., Wen, B., Jian, W., Guo, W., et al. (2015). The bacterial communities associated with fecal types and body weight of rex rabbits. Sci. Rep. 5:9342. doi: 10.1038/srep09342
    • (2015) Sci. Rep , vol.5 , pp. 9342
    • Zeng, B.1    Han, S.2    Wang, P.3    Wen, B.4    Jian, W.5    Guo, W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.